BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490514 Length=596 Score E Sequences producing significant alignments: (Bits) Value AT4G00525.1 | Symbols: | unknown protein; Has 35333 Blast hits... 697 0.0 > AT4G00525.1 | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:231780-232939 FORWARD LENGTH=675 Length=675 Score = 697 bits (377), Expect = 0.0 Identities = 494/546 (90%), Gaps = 25/546 (5%) Strand=Plus/Plus Query 61 ATGGAATCCATGG-GTCTAGATCCGGAACTTGAGATGGATGAAGGAGATCTGGAGACAA- 118 |||||||| |||| || |||||| |||||||| |||||||||||||||||||||| || Sbjct 83 ATGGAATCAATGGCTTC-AGATCCCGAACTTGACATGGATGAAGGAGATCTGGAGA-AAT 140 Query 119 TGGAGTCAGATGTGAAGCAGATGGCGAAGAAGATATCCGAGTACAGGCAAACCCTACCGG 178 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 141 TGGAGTCAGATGTGAAGCAGATGGCCAAGAAGATCTCCGAGTACAGGCAAACCCTACCGG 200 Query 179 ATCATCTCAGGAACACCCTTGATTCTGCGCTTTCTTCTCACTTACCCGTTTTCCCCAACA 238 |||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 201 ATCATCTCAGGAACACTCTTGATTCTGCGCTATCTTCCCACATACCCGTTTTCCCCAACA 260 Query 239 TCGATTCCGGGTCGGATCCTCTGCCGTC-TCCGTGCCTCACTATCGCAGAAGTAC--CTA 295 |||||||||||||||||||||| ||||| | | ||||||||||||||||||| || || Sbjct 261 TCGATTCCGGGTCGGATCCTCTTCCGTCGT-CATGCCTCACTATCGCAGAAGCACAGGTA 319 Query 296 -TTGGGTTAGGAACT-GAAGAGCAAGACTCTGGAGAGAAATGGATTCAGCTCAAGGAAAG 353 | || | | | |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 320 CCT-GG-T--GTGTTGGAAGAGCAAGACTCTGAAGAGAAATGGATTCAGCTCAAGGAAAG 375 Query 354 AATGTCGAGAAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 413 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 AATGTCGAGGAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 435 Query 414 GAGTATCGACAAACTCGATTCTTTAGACA-TTACCATTCACCCGGCATTCAGAAGGCGAA 472 |||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| || Sbjct 436 GAGTATCGACAAACTCGATTCTTTGGA-AGTTACCATTCACCCGGCATTCAAAAGGCAAA 494 Query 473 GAATTAACTGACTATTTCTCCTTCAGGCTGAGGCTCTCCATAGTAGTATTTCTTAGGAAA 532 ||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||||| Sbjct 495 GAATTAACTGACTATTTCTCCTTCATGCTTAGGCTCTCCATAGTA-T-TTTCTTAGGAAA 552 Query 533 GACATGTG--CTGATTTGTTAATATGTAATTCTAGATTAGATTGATCTGGCATGTACATT 590 || ||||| ||||||||| |||||||||||||||||| ||| |||||||||||||| Sbjct 553 GATATGTGTGCTGATTTGTGAATATGTAATTCTAGATT-GAT----CTGGCATGTACATT 607 Query 591 GGTGTC 596 |||||| Sbjct 608 GGTGTC 613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28683697937 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5