BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490514

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00525.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   697    0.0  


> AT4G00525.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:231780-232939 
FORWARD LENGTH=675
Length=675

 Score =  697 bits (377),  Expect = 0.0
 Identities = 494/546 (90%), Gaps = 25/546 (5%)
 Strand=Plus/Plus

Query  61   ATGGAATCCATGG-GTCTAGATCCGGAACTTGAGATGGATGAAGGAGATCTGGAGACAA-  118
            |||||||| ||||  || |||||| |||||||| |||||||||||||||||||||| || 
Sbjct  83   ATGGAATCAATGGCTTC-AGATCCCGAACTTGACATGGATGAAGGAGATCTGGAGA-AAT  140

Query  119  TGGAGTCAGATGTGAAGCAGATGGCGAAGAAGATATCCGAGTACAGGCAAACCCTACCGG  178
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  141  TGGAGTCAGATGTGAAGCAGATGGCCAAGAAGATCTCCGAGTACAGGCAAACCCTACCGG  200

Query  179  ATCATCTCAGGAACACCCTTGATTCTGCGCTTTCTTCTCACTTACCCGTTTTCCCCAACA  238
            |||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct  201  ATCATCTCAGGAACACTCTTGATTCTGCGCTATCTTCCCACATACCCGTTTTCCCCAACA  260

Query  239  TCGATTCCGGGTCGGATCCTCTGCCGTC-TCCGTGCCTCACTATCGCAGAAGTAC--CTA  295
            |||||||||||||||||||||| ||||| | | ||||||||||||||||||| ||   ||
Sbjct  261  TCGATTCCGGGTCGGATCCTCTTCCGTCGT-CATGCCTCACTATCGCAGAAGCACAGGTA  319

Query  296  -TTGGGTTAGGAACT-GAAGAGCAAGACTCTGGAGAGAAATGGATTCAGCTCAAGGAAAG  353
              | || |  |   | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  320  CCT-GG-T--GTGTTGGAAGAGCAAGACTCTGAAGAGAAATGGATTCAGCTCAAGGAAAG  375

Query  354  AATGTCGAGAAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA  413
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  AATGTCGAGGAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA  435

Query  414  GAGTATCGACAAACTCGATTCTTTAGACA-TTACCATTCACCCGGCATTCAGAAGGCGAA  472
            |||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| ||
Sbjct  436  GAGTATCGACAAACTCGATTCTTTGGA-AGTTACCATTCACCCGGCATTCAAAAGGCAAA  494

Query  473  GAATTAACTGACTATTTCTCCTTCAGGCTGAGGCTCTCCATAGTAGTATTTCTTAGGAAA  532
            ||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||
Sbjct  495  GAATTAACTGACTATTTCTCCTTCATGCTTAGGCTCTCCATAGTA-T-TTTCTTAGGAAA  552

Query  533  GACATGTG--CTGATTTGTTAATATGTAATTCTAGATTAGATTGATCTGGCATGTACATT  590
            || |||||  ||||||||| |||||||||||||||||| |||    ||||||||||||||
Sbjct  553  GATATGTGTGCTGATTTGTGAATATGTAATTCTAGATT-GAT----CTGGCATGTACATT  607

Query  591  GGTGTC  596
            ||||||
Sbjct  608  GGTGTC  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5