BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490520 Length=1652 Score E Sequences producing significant alignments: (Bits) Value AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleoti... 2531 0.0 AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleoti... 1247 0.0 > AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide exchange factor 3 | chr4:211117-213697 REVERSE LENGTH=1714 Length=1714 Score = 2531 bits (1370), Expect = 0.0 Identities = 1578/1674 (94%), Gaps = 32/1674 (2%) Strand=Plus/Plus Query 1 TTCATCGTCTGGATGGTAAGATCAGTTCTTCCTTTCTATCATCGGACGGTCCACATTTAC 60 |||||||||||||| ||| |||||| ||| |||| || |||||||||||||||||||||| Sbjct 22 TTCATCGTCTGGATCGTACGATCAG-TCTACCTTCCTTTCATCGGACGGTCCACATTTAC 80 Query 61 TCCATTTTCCGGTCGCCGGCTTAAAGAAGGTTTTGGATTCAACAAGAGGGAATTT-G--- 116 |||||||||||||||||||||||||||| | ||| |||||||| |||||||||| | Sbjct 81 TCCATTTTCCGGTCGCCGGCTTAAAGAACGATTTCGATTCAACCGGAGGGAATTTGGTTT 140 Query 117 ----------Gtt----ttttttGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 162 ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TTTTATTAACGTTCAAATTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 200 Query 163 AAAGAAGAAACAGAACAAGAACAAAAAGGACAGACCTTTGAGGA--GTTTTCAGA--TTA 218 |||||||||||||| |||||||||||| |||||||||| |||| ||||| ||| ||| Sbjct 201 AAAGAAGAAACAGAGCAAGAACAAAAAAAACAGACCTTTAAGGAGTGTTTTAAGATTTTA 260 Query 219 AAGATGGAGAATTTATCGAATCCAGATGAAAACGACGATGTGGGGTATCATCAATCACCT 278 |||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 261 AAGATGGAGAATTTATCGAATCCAGATGAAAACGAC--------G-ATCATCAATCACCT 311 Query 279 AGATCCATTGACCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 312 AGATCCATTGACCAAAATGATCAATCAGCAGTAGAAACTCCGGTTTACTCGACGATGAGC 371 Query 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACTTCAGGTTTTTCAGACCAG 398 || |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| Sbjct 372 ATAGATTCCTTTGTTTACCCTCGAACTTGTTCAGAGACCACTTCAGGGTTTTCAGACCAG 431 Query 399 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTCACT 458 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 432 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAACTGGCCTGTCCTTACT 491 Query 459 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGGTGCAATCAAATGAAAGTCTTGCA 518 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | Sbjct 492 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGATGCAATCAAATGAATGTCTTGTA 551 Query 519 GTCCAAGAAATTTCAGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCAAAGCTTCTA 578 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 552 GTCCAAGAAATTTCTGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCTAAGCTTCTA 611 Query 579 CTTGGAGAAGACATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTAACGATCTCAAAC 638 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 612 CTTGGAGAAGATATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTGACTATCTCAAAC 671 Query 639 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 731 Query 699 ACAGAGAAGAGAGCAATGTGGAAGAGAGAGATGAATTGTCTCTTATCGGTATGCGATTAC 758 ||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||| Sbjct 732 ACAGAGAAGAGAGCATTGTGGAAGAGAGAAATGAATTGTCTTTTATCTGTATGCGATTAC 791 Query 759 ATAGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 818 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 ATTGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 851 Query 819 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTACCTGCATTGAGAAAGCTAGATTCA 878 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 852 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTGCCTGCATTGAGAAAGCTAGATTCA 911 Query 879 ATGCTTATGGAAGCATTGGATGGTTTTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGA 938 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 912 ATGCTTATGGAAGCATTGGATAGTTTTCAGAACACAGAGTTTTGGTATGCAGAAGAAGGA 971 Query 939 AGTTTGTCGATGAAATCAGCGCGTTCTTCGACTGGATCATTCAGGAAAGTGATTGTACAG 998 ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 972 AGTTTATCGATGAAATCAGCTCGTTCTTCGACTGGATCATTCAGGAAAGTTATAGTACAA 1031 Query 999 AGGAAAGAAGAGAAATGGTGGTTACCAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGAT 1058 ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| Sbjct 1032 AGGAAAGAAGAGAAATGGTGGTTACCAGTTCCTCTAGTACCATCAGAAGGTTTGTCAGAT 1091 Query 1059 AAAGCCAGAAAACAACTCAAAAACAAGAGAGAGAGTACCAATCAGATTCACAAAGCTGCA 1118 |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 1092 AAAGCCAGAAAACAACTCAAGAACAAGAGAGAAAGTACCAATCAGATTCATAAAGCTGCA 1151 Query 1119 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGAGTCTTACATGACAACT 1178 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1152 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGACTCTTACATGACAACT 1211 Query 1179 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCG 1238 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCT 1271 Query 1239 GGTCGGTTTTTCCCAGAACAACTGTTAGATTGTCTGAACATAGCCTCTGAGCATGAAGCT 1298 ||||||||||||||||| ||||| |||||||||||||||||| | || || ||||||||| Sbjct 1272 GGTCGGTTTTTCCCAGAGCAACTCTTAGATTGTCTGAACATATCTTCCGAACATGAAGCT 1331 Query 1299 GTTCAGTTAGCAGATAGAGTAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTT 1358 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1332 GTTCAGTTAGCAGATAGAGTAGAAGCTTCGATGTACACATGGAGACGCAAATCTTGTCTT 1391 Query 1359 AGTAACTCTAAGAGCTCATGGAACATGGTGAAAGATCTTATGTCAAATACAGAGAGAACA 1418 |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1392 AGTAACTCCAAGAACTCATGGAACATGGTGAAAGATCTTATGTCAACTACAGAGAGAACA 1451 Query 1419 GACAAGAACTATGTAATGGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1478 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1452 GACAAGAACTATGTTATGGCTGAGAGAGCTGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1511 Query 1479 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1512 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1571 Query 1539 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1572 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1631 Query 1599 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1652 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1685 > AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleotide exchange factor 2 | chr1:259495-261474 REVERSE LENGTH=1458 Length=1458 Score = 1247 bits (675), Expect = 0.0 Identities = 1214/1467 (83%), Gaps = 65/1467 (4%) Strand=Plus/Plus Query 222 ATGGAGAATTTATCGAATCCA-GATGAAAACGACGATGTGGGGTATCATCAATCACCTAG 280 ||||||||||| | ||| || || ||||||||||||||||| |||||||| |||||| | Sbjct 1 ATGGAGAATTTGCCAAAT-CACGAAGAAAACGACGATGTGGGCTATCATCAGTCACCT-G 58 Query 281 AT-CCATTGA-CCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338 | |||| || || ||||||||| |||||| | ||||||||||||||||| || |||||| Sbjct 59 GTCCCATCGATCC-AAATGATCATTCAGCATCTGAAACTCCGGTTTACTCAACAATGAGC 117 Query 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACT---TCAGGTTTTTCAGAC 395 | ||||| |||| ||||| |||||| ||||| || | | || ||| ||||||||| Sbjct 118 ACAGATTCTTTTGCTTATCATCGAACATGTTCTGAAACCTCTGGAGGAGGCTTTTCAGAC 177 Query 396 CAGATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTC 455 || ||||||||||||| ||| ||||| | ||| ||||||||| || ||||||||||| | Sbjct 178 CAAATAGATGAAACCAGCAGTTTCTGCACTGAGGCTTCTCCTAGTGATTGGCCTGTCTTA 237 Query 456 ACTGAAT-C--TAA------GAGCTCCAAA-TGTCTC-TCTGGT-TTAGAGGTG---C-- 498 || |||| | || ||||| |||| | || | || || || || || | Sbjct 238 ACCGAATCCAACAACTCTGCGAGCT-CAAATTTTC-CAACT-GTCTTCGACTTGAAACAT 294 Query 499 AATC--A---A-A-TGA-AAG--TCTTGCAGTCCAAGAAATTTCAGAACCAGAACTTGAG 548 |||| | | | ||| || ||||| ||||||||||||||||| ||||| || ||| Sbjct 295 AATCAGATTGAGACTGATGAGCACCTTGCGGTCCAAGAAATTTCAGAGCCAGAGCTGGAG 354 Query 549 ACAATGAAGGAAAGATTCGCAAAGCTTCTACTTGGAGAAGACATGTCAGGGAGTGGTAAA 608 || ||||||||||||||| | |||||||| ||||| ||||| |||||||| || || ||| Sbjct 355 ACGATGAAGGAAAGATTCTCGAAGCTTCTGCTTGGGGAAGATATGTCAGGAAGCGGCAAA 414 Query 609 GGAGTTTGCACTGCAGTAACGATCTCAAACGCAATTACCAATCTTTATGCTACAGTGTTT 668 || |||||||| ||||| || ||||||||||| || ||||||||||||||||| || ||| Sbjct 415 GGCGTTTGCACCGCAGTGACAATCTCAAACGCTATAACCAATCTTTATGCTACTGTTTTT 474 Query 669 GGACAGAATCTGAGGTTAGAGCCGTTAGAAACAGAGAAG-AGAGCAATGTGGAAGAGAGA 727 ||||||||||| || ||||| || || || | |||| || ||| | | |||||||||||| Sbjct 475 GGACAGAATCTAAGATTAGAACCATTGGAGATAGAGCAGAAGA-CGACGTGGAAGAGAGA 533 Query 728 GATGAATTGTC-TCTTATCGGTATGCGATTACATAGTCGAATTCATCCCTAGATGT--CA 784 |||||||| | || | || || || || || || |||| || ||||| | | || || Sbjct 534 AATGAATTGCCTTC-TCTCTGTGTGTGACTATATTTTCGAGTTTATCCC-A-AAGTCACA 590 Query 785 GAATCTAAGCAATGGAGCTACTGTTGAGGTGATGGAGAGTAGACCAAGAGCAGATATCTA 844 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 591 GAATCTAAGCAATGGAGCCACTGTTGAGGTCATGGAGAGTAGACCAAGAGCAGATATCTA 650 Query 845 TATCAACT-TACCTGCATTGAGAAAGCTAGATTCAATGCTTATGGAAGCATTGGATGGTT 903 ||||| | | |||||| | ||||| |||||||| ||||||||||| ||||||||| ||| Sbjct 651 CATCAA-TCTGCCTGCACTCAGAAAACTAGATTCCATGCTTATGGAGGCATTGGATAGTT 709 Query 904 TTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGAAGTTTGTCGATGAAATCAGCGCGTT 963 ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||| Sbjct 710 TTCAAAAGACAGAGTTTTGGTATGCAGAAGAAGGAAGCTTGTCGATGAAGTCAACGCGTT 769 Query 964 CTTCGACTGGATCATTCAGGAAAGTGATTGTACAGAGGAAAGAAGAGAAATGGTGGTTAC 1023 | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 770 CCGCAACTGGATCATTCAGGAAAGTGATTGTGCAGAGGAAAGAAGAGAAATGGTGGTTAC 829 Query 1024 CAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGATAAAGCCAGAAAACAACTCAAAAACA 1083 | |||||||| || ||| | ||||||| ||||| || || || |||||||| || | || Sbjct 830 CGATTCCTCTGGTTCCATTACAAGGTTTATCAGAGAAGGCAAGGAAACAACTTAAGAGCA 889 Query 1084 AGAGAGAGAGTACCAATCAGATTCACAAAGCTGCAATGGCTATCAACAGTAGCATTCTCA 1143 || ||||||| || ||||| || || |||||||| ||||| ||||| || ||||| ||| Sbjct 890 AGCGAGAGAGCACTAATCAAATCCATAAAGCTGCTATGGCCATCAATAGCAGCATACTCG 949 Query 1144 GTGAAATGGAGATTCCAGAGTCTTACATGACAACTCTTCCAAAGTGTGGTAAAAGC-AGT 1202 |||||||||| ||||| || ||||||||| |||||||||||||| | || |||||| || Sbjct 950 GTGAAATGGATATTCCTGATTCTTACATGGCAACTCTTCCAAAGAGCGG-AAAAGCGAGC 1008 Query 1203 GTTGGAGATTCAATTTACCGTTACATGAGTG-GTTC-GGGTCGGTTTTTC-CCAGAACAA 1259 |||||| |||| || || |||||| | |||| ||| ||| ||||| |||||| || Sbjct 1009 ACAGGAGATGCAATCTATCGACACATGA-CGAGTTCAGGG-CGG-TTTTCACCAGAAAAA 1065 Query 1260 CTGT-TAGATTGTCTGAACATAGCCTCTGAGCATGAAGCTG-TTCAGTTAGCAGATAGAG 1317 || | ||||| |||| || || | || || |||||||| | ||||| | |||||||||| Sbjct 1066 CT-TCTAGATCGTCTCAAGATTGTATCAGAACATGAAGC-GCTTCAGCTGGCAGATAGAG 1123 Query 1318 TAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTTAGTAACTCTAAGAGCT-CA 1376 |||||||||||||||||||||||||||||||||||||||||| || || ||| || || Sbjct 1124 TAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTTAACAATTCCAAGT-CTTCA 1182 Query 1377 TGGAACATGGTGAAAGATCTTA-TGTCAAATACAGAGAGAACAGACAAGAACTATGTAAT 1435 ||||| |||||||||||| ||| |||||| ||||||||||| |||||||||||||| | Sbjct 1183 TGGAATATGGTGAAAGAT-TTAATGTCAATTACAGAGAGAAGTGACAAGAACTATGTTTT 1241 Query 1436 GGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGTTATCCAGAATTGTCTCA 1495 |||||||||||||||| || | ||||||||||||||||| || || |||||||||||||| Sbjct 1242 GGCTGAGAGAGCAGAGTCTTTGCTCTTCTGTTTGAAACAACGGTACCCAGAATTGTCTCA 1301 Query 1496 GACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTTGGAAAAGCTGTGTTGGA 1555 |||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||| || Sbjct 1302 GACATCGTTAGATATTTGCAAGATTCATTGCAACAAGGATGTTGGAAAAGCTGTGTTAGA 1361 Query 1556 GAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGT 1615 ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 GAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGT 1421 Query 1616 TCTCTATGTAGACAAAACCATGAGAGG 1642 ||| |||||||||||||| |||||||| Sbjct 1422 TCTTTATGTAGACAAAACAATGAGAGG 1448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81626086170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5