BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490520
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleoti... 2531 0.0
AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleoti... 1247 0.0
> AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide
exchange factor 3 | chr4:211117-213697 REVERSE LENGTH=1714
Length=1714
Score = 2531 bits (1370), Expect = 0.0
Identities = 1578/1674 (94%), Gaps = 32/1674 (2%)
Strand=Plus/Plus
Query 1 TTCATCGTCTGGATGGTAAGATCAGTTCTTCCTTTCTATCATCGGACGGTCCACATTTAC 60
|||||||||||||| ||| |||||| ||| |||| || ||||||||||||||||||||||
Sbjct 22 TTCATCGTCTGGATCGTACGATCAG-TCTACCTTCCTTTCATCGGACGGTCCACATTTAC 80
Query 61 TCCATTTTCCGGTCGCCGGCTTAAAGAAGGTTTTGGATTCAACAAGAGGGAATTT-G--- 116
|||||||||||||||||||||||||||| | ||| |||||||| |||||||||| |
Sbjct 81 TCCATTTTCCGGTCGCCGGCTTAAAGAACGATTTCGATTCAACCGGAGGGAATTTGGTTT 140
Query 117 ----------Gtt----ttttttGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 162
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTTTATTAACGTTCAAATTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 200
Query 163 AAAGAAGAAACAGAACAAGAACAAAAAGGACAGACCTTTGAGGA--GTTTTCAGA--TTA 218
|||||||||||||| |||||||||||| |||||||||| |||| ||||| ||| |||
Sbjct 201 AAAGAAGAAACAGAGCAAGAACAAAAAAAACAGACCTTTAAGGAGTGTTTTAAGATTTTA 260
Query 219 AAGATGGAGAATTTATCGAATCCAGATGAAAACGACGATGTGGGGTATCATCAATCACCT 278
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 261 AAGATGGAGAATTTATCGAATCCAGATGAAAACGAC--------G-ATCATCAATCACCT 311
Query 279 AGATCCATTGACCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 312 AGATCCATTGACCAAAATGATCAATCAGCAGTAGAAACTCCGGTTTACTCGACGATGAGC 371
Query 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACTTCAGGTTTTTCAGACCAG 398
|| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 372 ATAGATTCCTTTGTTTACCCTCGAACTTGTTCAGAGACCACTTCAGGGTTTTCAGACCAG 431
Query 399 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTCACT 458
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 432 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAACTGGCCTGTCCTTACT 491
Query 459 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGGTGCAATCAAATGAAAGTCTTGCA 518
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 492 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGATGCAATCAAATGAATGTCTTGTA 551
Query 519 GTCCAAGAAATTTCAGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCAAAGCTTCTA 578
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 552 GTCCAAGAAATTTCTGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCTAAGCTTCTA 611
Query 579 CTTGGAGAAGACATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTAACGATCTCAAAC 638
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 612 CTTGGAGAAGATATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTGACTATCTCAAAC 671
Query 639 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 731
Query 699 ACAGAGAAGAGAGCAATGTGGAAGAGAGAGATGAATTGTCTCTTATCGGTATGCGATTAC 758
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 732 ACAGAGAAGAGAGCATTGTGGAAGAGAGAAATGAATTGTCTTTTATCTGTATGCGATTAC 791
Query 759 ATAGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 818
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ATTGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 851
Query 819 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTACCTGCATTGAGAAAGCTAGATTCA 878
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 852 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTGCCTGCATTGAGAAAGCTAGATTCA 911
Query 879 ATGCTTATGGAAGCATTGGATGGTTTTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGA 938
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 912 ATGCTTATGGAAGCATTGGATAGTTTTCAGAACACAGAGTTTTGGTATGCAGAAGAAGGA 971
Query 939 AGTTTGTCGATGAAATCAGCGCGTTCTTCGACTGGATCATTCAGGAAAGTGATTGTACAG 998
||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 972 AGTTTATCGATGAAATCAGCTCGTTCTTCGACTGGATCATTCAGGAAAGTTATAGTACAA 1031
Query 999 AGGAAAGAAGAGAAATGGTGGTTACCAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGAT 1058
||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 1032 AGGAAAGAAGAGAAATGGTGGTTACCAGTTCCTCTAGTACCATCAGAAGGTTTGTCAGAT 1091
Query 1059 AAAGCCAGAAAACAACTCAAAAACAAGAGAGAGAGTACCAATCAGATTCACAAAGCTGCA 1118
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1092 AAAGCCAGAAAACAACTCAAGAACAAGAGAGAAAGTACCAATCAGATTCATAAAGCTGCA 1151
Query 1119 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGAGTCTTACATGACAACT 1178
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1152 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGACTCTTACATGACAACT 1211
Query 1179 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCG 1238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCT 1271
Query 1239 GGTCGGTTTTTCCCAGAACAACTGTTAGATTGTCTGAACATAGCCTCTGAGCATGAAGCT 1298
||||||||||||||||| ||||| |||||||||||||||||| | || || |||||||||
Sbjct 1272 GGTCGGTTTTTCCCAGAGCAACTCTTAGATTGTCTGAACATATCTTCCGAACATGAAGCT 1331
Query 1299 GTTCAGTTAGCAGATAGAGTAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTT 1358
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1332 GTTCAGTTAGCAGATAGAGTAGAAGCTTCGATGTACACATGGAGACGCAAATCTTGTCTT 1391
Query 1359 AGTAACTCTAAGAGCTCATGGAACATGGTGAAAGATCTTATGTCAAATACAGAGAGAACA 1418
|||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1392 AGTAACTCCAAGAACTCATGGAACATGGTGAAAGATCTTATGTCAACTACAGAGAGAACA 1451
Query 1419 GACAAGAACTATGTAATGGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1478
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1452 GACAAGAACTATGTTATGGCTGAGAGAGCTGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1511
Query 1479 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1571
Query 1539 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1631
Query 1599 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1685
> AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleotide
exchange factor 2 | chr1:259495-261474 REVERSE LENGTH=1458
Length=1458
Score = 1247 bits (675), Expect = 0.0
Identities = 1214/1467 (83%), Gaps = 65/1467 (4%)
Strand=Plus/Plus
Query 222 ATGGAGAATTTATCGAATCCA-GATGAAAACGACGATGTGGGGTATCATCAATCACCTAG 280
||||||||||| | ||| || || ||||||||||||||||| |||||||| |||||| |
Sbjct 1 ATGGAGAATTTGCCAAAT-CACGAAGAAAACGACGATGTGGGCTATCATCAGTCACCT-G 58
Query 281 AT-CCATTGA-CCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338
| |||| || || ||||||||| |||||| | ||||||||||||||||| || ||||||
Sbjct 59 GTCCCATCGATCC-AAATGATCATTCAGCATCTGAAACTCCGGTTTACTCAACAATGAGC 117
Query 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACT---TCAGGTTTTTCAGAC 395
| ||||| |||| ||||| |||||| ||||| || | | || ||| |||||||||
Sbjct 118 ACAGATTCTTTTGCTTATCATCGAACATGTTCTGAAACCTCTGGAGGAGGCTTTTCAGAC 177
Query 396 CAGATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTC 455
|| ||||||||||||| ||| ||||| | ||| ||||||||| || ||||||||||| |
Sbjct 178 CAAATAGATGAAACCAGCAGTTTCTGCACTGAGGCTTCTCCTAGTGATTGGCCTGTCTTA 237
Query 456 ACTGAAT-C--TAA------GAGCTCCAAA-TGTCTC-TCTGGT-TTAGAGGTG---C-- 498
|| |||| | || ||||| |||| | || | || || || || || |
Sbjct 238 ACCGAATCCAACAACTCTGCGAGCT-CAAATTTTC-CAACT-GTCTTCGACTTGAAACAT 294
Query 499 AATC--A---A-A-TGA-AAG--TCTTGCAGTCCAAGAAATTTCAGAACCAGAACTTGAG 548
|||| | | | ||| || ||||| ||||||||||||||||| ||||| || |||
Sbjct 295 AATCAGATTGAGACTGATGAGCACCTTGCGGTCCAAGAAATTTCAGAGCCAGAGCTGGAG 354
Query 549 ACAATGAAGGAAAGATTCGCAAAGCTTCTACTTGGAGAAGACATGTCAGGGAGTGGTAAA 608
|| ||||||||||||||| | |||||||| ||||| ||||| |||||||| || || |||
Sbjct 355 ACGATGAAGGAAAGATTCTCGAAGCTTCTGCTTGGGGAAGATATGTCAGGAAGCGGCAAA 414
Query 609 GGAGTTTGCACTGCAGTAACGATCTCAAACGCAATTACCAATCTTTATGCTACAGTGTTT 668
|| |||||||| ||||| || ||||||||||| || ||||||||||||||||| || |||
Sbjct 415 GGCGTTTGCACCGCAGTGACAATCTCAAACGCTATAACCAATCTTTATGCTACTGTTTTT 474
Query 669 GGACAGAATCTGAGGTTAGAGCCGTTAGAAACAGAGAAG-AGAGCAATGTGGAAGAGAGA 727
||||||||||| || ||||| || || || | |||| || ||| | | ||||||||||||
Sbjct 475 GGACAGAATCTAAGATTAGAACCATTGGAGATAGAGCAGAAGA-CGACGTGGAAGAGAGA 533
Query 728 GATGAATTGTC-TCTTATCGGTATGCGATTACATAGTCGAATTCATCCCTAGATGT--CA 784
|||||||| | || | || || || || || || |||| || ||||| | | || ||
Sbjct 534 AATGAATTGCCTTC-TCTCTGTGTGTGACTATATTTTCGAGTTTATCCC-A-AAGTCACA 590
Query 785 GAATCTAAGCAATGGAGCTACTGTTGAGGTGATGGAGAGTAGACCAAGAGCAGATATCTA 844
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 591 GAATCTAAGCAATGGAGCCACTGTTGAGGTCATGGAGAGTAGACCAAGAGCAGATATCTA 650
Query 845 TATCAACT-TACCTGCATTGAGAAAGCTAGATTCAATGCTTATGGAAGCATTGGATGGTT 903
||||| | | |||||| | ||||| |||||||| ||||||||||| ||||||||| |||
Sbjct 651 CATCAA-TCTGCCTGCACTCAGAAAACTAGATTCCATGCTTATGGAGGCATTGGATAGTT 709
Query 904 TTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGAAGTTTGTCGATGAAATCAGCGCGTT 963
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 710 TTCAAAAGACAGAGTTTTGGTATGCAGAAGAAGGAAGCTTGTCGATGAAGTCAACGCGTT 769
Query 964 CTTCGACTGGATCATTCAGGAAAGTGATTGTACAGAGGAAAGAAGAGAAATGGTGGTTAC 1023
| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 CCGCAACTGGATCATTCAGGAAAGTGATTGTGCAGAGGAAAGAAGAGAAATGGTGGTTAC 829
Query 1024 CAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGATAAAGCCAGAAAACAACTCAAAAACA 1083
| |||||||| || ||| | ||||||| ||||| || || || |||||||| || | ||
Sbjct 830 CGATTCCTCTGGTTCCATTACAAGGTTTATCAGAGAAGGCAAGGAAACAACTTAAGAGCA 889
Query 1084 AGAGAGAGAGTACCAATCAGATTCACAAAGCTGCAATGGCTATCAACAGTAGCATTCTCA 1143
|| ||||||| || ||||| || || |||||||| ||||| ||||| || ||||| |||
Sbjct 890 AGCGAGAGAGCACTAATCAAATCCATAAAGCTGCTATGGCCATCAATAGCAGCATACTCG 949
Query 1144 GTGAAATGGAGATTCCAGAGTCTTACATGACAACTCTTCCAAAGTGTGGTAAAAGC-AGT 1202
|||||||||| ||||| || ||||||||| |||||||||||||| | || |||||| ||
Sbjct 950 GTGAAATGGATATTCCTGATTCTTACATGGCAACTCTTCCAAAGAGCGG-AAAAGCGAGC 1008
Query 1203 GTTGGAGATTCAATTTACCGTTACATGAGTG-GTTC-GGGTCGGTTTTTC-CCAGAACAA 1259
|||||| |||| || || |||||| | |||| ||| ||| ||||| |||||| ||
Sbjct 1009 ACAGGAGATGCAATCTATCGACACATGA-CGAGTTCAGGG-CGG-TTTTCACCAGAAAAA 1065
Query 1260 CTGT-TAGATTGTCTGAACATAGCCTCTGAGCATGAAGCTG-TTCAGTTAGCAGATAGAG 1317
|| | ||||| |||| || || | || || |||||||| | ||||| | ||||||||||
Sbjct 1066 CT-TCTAGATCGTCTCAAGATTGTATCAGAACATGAAGC-GCTTCAGCTGGCAGATAGAG 1123
Query 1318 TAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTTAGTAACTCTAAGAGCT-CA 1376
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||
Sbjct 1124 TAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTTAACAATTCCAAGT-CTTCA 1182
Query 1377 TGGAACATGGTGAAAGATCTTA-TGTCAAATACAGAGAGAACAGACAAGAACTATGTAAT 1435
||||| |||||||||||| ||| |||||| ||||||||||| |||||||||||||| |
Sbjct 1183 TGGAATATGGTGAAAGAT-TTAATGTCAATTACAGAGAGAAGTGACAAGAACTATGTTTT 1241
Query 1436 GGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGTTATCCAGAATTGTCTCA 1495
|||||||||||||||| || | ||||||||||||||||| || || ||||||||||||||
Sbjct 1242 GGCTGAGAGAGCAGAGTCTTTGCTCTTCTGTTTGAAACAACGGTACCCAGAATTGTCTCA 1301
Query 1496 GACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTTGGAAAAGCTGTGTTGGA 1555
|||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||| ||
Sbjct 1302 GACATCGTTAGATATTTGCAAGATTCATTGCAACAAGGATGTTGGAAAAGCTGTGTTAGA 1361
Query 1556 GAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGT 1615
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGT 1421
Query 1616 TCTCTATGTAGACAAAACCATGAGAGG 1642
||| |||||||||||||| ||||||||
Sbjct 1422 TCTTTATGTAGACAAAACAATGAGAGG 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5