BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490527
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00400.1 | Symbols: GPAT8, AtGPAT8 | glycerol-3-phosphate ac... 2451 0.0
AT1G01610.1 | Symbols: ATGPAT4, GPAT4 | glycerol-3-phosphate ac... 1362 0.0
> AT4G00400.1 | Symbols: GPAT8, AtGPAT8 | glycerol-3-phosphate
acyltransferase 8 | chr4:174062-176853 REVERSE LENGTH=1872
Length=1872
Score = 2451 bits (1327), Expect = 0.0
Identities = 1481/1558 (95%), Gaps = 0/1558 (0%)
Strand=Plus/Plus
Query 1 TTTGTGCTCTCTGTTCTTTAGAGCCGCCATTAACgagagagagagagagagagagagaCT 60
||| |||||||||||||||||| | |||||||||||||| |||||||||||| | | ||
Sbjct 48 TTTTTGCTCTCTGTTCTTTAGAACTGCCATTAACGAGAGTGAGAGAGAGAGACACACACA 107
Query 61 TGGCGAGTTATAATGTCTCCCGAGAAGAAGAGTCAAAATTTTCCTCCGATAACGGAATGC 120
|||||| | ||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 108 CAGCGAGTGAAAATGTCTCCGGAGAAGAAGAGTCAAAACTTCCCTCCAATAACGGAATGC 167
Query 121 AGAGACGGAGAGTACGATTCGATCGCCGCCGATCTCGACGGGACTCTGCTTCTCTCAAGA 180
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 168 AGAGACGGAGAGTACGATTCGATAGCCGCCGATCTTGACGGGACTCTGCTTCTCTCAAGA 227
Query 181 AGCTCGTTCCCTTACTTCATGCTCGTCGCCGTTGAAGCTGGAAGCCTTTTCCGTGGACTA 240
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 228 AGCTCCTTCCCTTACTTCATGCTCGTCGCTGTTGAAGCTGGAAGCCTTTTACGTGGACTA 287
Query 241 ATCCTCCTTCTCTCGTTACCATTCGTCATCGTTTCTTACCTATTCGTATCCGAATCTCTT 300
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 288 ATCCTCCTTCTCTCGTTACCATTCGTCATTATCTCTTACCTATTCGTATCCGAATCTCTT 347
Query 301 GGAATCCACATCCTCATCTTCATCTCCTTCGCTGGTCTCAAAATCCGCGATATCGAACTC 360
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 348 GGTATCCAGATCCTCATCTTCATCTCATTCGCTGGTCTCAAAATCCGCGATATCGAACTT 407
Query 361 GTCTCTCGCGCAGTTCTTCCACGGTTTTATGCGGCGGATGTGAGGAAAGACAGTTTTGAT 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 408 GTCTCTCGCGCAGTTCTTCCACGGTTTTACGCGGCGGATGTGAGGAAAGACAGTTTTGAG 467
Query 421 GTGTTTGATAAGTGTAAGAGGAAAGTGGTAGTGACGGCGAATCCGATAGTGATGGTGGAG 480
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 468 GTGTTTGATAAGTGTAAGAGAAAAGTGGTAGTGACGGCGAATCCGATTGTGATGGTGGAG 527
Query 481 GCGTTTGTGAAGGATTATCTTGGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTCAAC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 528 GCGTTTGTGAAGGATTATCTTGGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTTAAC 587
Query 541 CCCAAATCCAATAGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTT 600
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CCTAAAACCAATAGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTT 647
Query 601 AAGAGGCTAGCCATTTTGAAAGAGTTTGGTGACAAATCACCCGATCTCGGCCTCGGTGAT 660
|||||| |||||||||| |||||||||||| || ||||||| ||||||||||||||||||
Sbjct 648 AAGAGGTTAGCCATTTTAAAAGAGTTTGGTAACGAATCACCTGATCTCGGCCTCGGTGAT 707
Query 661 CGAACCTCTGATCACGATTTCATGTCCCTCTGCAAGAAAGGCTACATGGTTCATGCGAGC 720
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 708 CGAACCTCTGATCATGATTTCATGTCTCTCTGCAAGAAAGGTTACATGGTTCATGCGACC 767
Query 721 AAGTCAGCCACAACAATTCCAAAAGAACGTTTAAAGAACCGTATAGTCTTCCACGACGGG 780
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 768 AAGTCAGCCACAACGATTCCAAAAGAACGCTTAAAGAACCGCATAGTCTTCCATGATGGG 827
Query 781 CGTTTAGCGCAACGTCCAACGCCCTTAAACGCCATTATCACATACCTATGGCTTCCCTTT 840
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 828 CGTTTAGCGCAACGTCCAACTCCGTTAAACGCCATTATCACATACCTATGGCTTCCTTTT 887
Query 841 GGTTTCATACTCTCCATCATTCGCGTCTACTTCAACCTCCCTTTACCTGAACGCTTTGTC 900
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 888 GGTTTCATCCTCTCCATCATTCGCGTCTACTTCAACCTCCCTTTACCTGAAAGATTTGTC 947
Query 901 CGTTACACCTACGAGATTCTCGGGATCCACTTAACCATTCGTGGCCATCGTCCTCCACCT 960
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 948 CGTTACACTTACGAGATGCTCGGGATCCACTTAACCATTCGTGGTCATCGTCCTCCACCT 1007
Query 961 CCTTCCCCCGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTGATCCC 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CCTTCCCCTGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTGATCCC 1067
Query 1021 ATCATCGTTGCCATTGCTCTTGGACGCAAGATCTGTTGTGTTACTTACAGTGTCTCTCGT 1080
||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1068 ATCATCGTTGCTATTGCTCTTGGACGTAAGATCTGTTGCGTCACTTACAGTGTCTCTCGT 1127
Query 1081 CTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGTCACCGAT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1128 CTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGCCACCGAT 1187
Query 1141 GCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAGGCACA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAGGCACG 1247
Query 1201 ACGTGCAGAGAAGAGTATCTTCTGAGATTTAGCGCTCTATTCTCAGAGCTTAGTGACCGG 1260
||||| |||||||||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 1248 ACGTGTAGAGAAGAGTATCTACTGAGATTTAGCGCTCTATTCGCAGAGCTAAGCGACCGG 1307
Query 1261 ATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGTGAGGGGT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1308 ATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGTTAGGGGT 1367
Query 1321 GTGAAGTTCTGGGACCCTTACTTCTTTTTCATGAACCCAAGACCAAGCTATGAAGCCACT 1380
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1368 GTGAAGTTTTGGGACCCTTACTTCTTCTTCATGAACCCAAGACCAAGCTATGAAGCCACT 1427
Query 1381 TTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGCGGCAAGACTCCTATAGAG 1440
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1428 TTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGTGGCAAGACTCCTATAGAG 1487
Query 1441 GTGGCCAATTACGTCCAGAAAGTTATTGGCGCGGTCTTGGGCTTCGAATGCACCGAACTT 1500
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1488 GTGGCTAATTACGTCCAGAAAGTTATCGGCGCGGTTTTGGGCTTCGAATGCACCGAACTT 1547
Query 1501 ACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGTCTATCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGTCTATCA 1605
> AT1G01610.1 | Symbols: ATGPAT4, GPAT4 | glycerol-3-phosphate
acyltransferase 4 | chr1:221691-224340 REVERSE LENGTH=1856
Length=1856
Score = 1362 bits (737), Expect = 0.0
Identities = 1256/1506 (83%), Gaps = 37/1506 (2%)
Strand=Plus/Plus
Query 73 ATGTCTCCCGAGAAGAAGAGTCAAAATTTTCCTCCGATAACG-GAATG-CAGAGACGGAG 130
|||||||| | ||||||||| | || |||||||||||||| | || || | || | |||
Sbjct 86 ATGTCTCCGGCGAAGAAGAGCCGAAGTTTTCCTCCGATAA-GCGAGTGTAAAAG-CAGAG 143
Query 131 AGTACGATTCGATCGCCGCCGATCTCGACGGGACTCTGCTTCTCTCAAGAAGCTCGTTCC 190
|||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 144 AGTATGATTCGATCGCTGCGGATCTCGACGGGACTCTGCTTCTGTCAAGAAGCTCTTTCC 203
Query 191 CTTACTTCATGCTCGTCGCCGTTGAAGCTGGAAGCCTTTTCCGTGGACTAATCCTCCTTC 250
||||||||||||| || ||| ||||||| || || || ||||||||| | ||||| ||||
Sbjct 204 CTTACTTCATGCTGGTGGCCATTGAAGCAGGTAGTCTCTTCCGTGGATTGATCCTTCTTC 263
Query 251 --TCTCGTTACCATTCGTCATCGTTTCTTACCTATTCGTATCCGAATCTCTTGGAATCCA 308
|||| || ||| |||||||| | |||| || ||||| ||||||||||| ||||||||
Sbjct 264 TTTCTC-TTCCCA-TCGTCATCATCGCTTATCTCTTCGTCTCCGAATCTCTCGGAATCCA 321
Query 309 CATCCTCATCTTCATCTCCTTCGCTGGTCTCAAAATCCGCG-ATATCGAACTCGTCTCTC 367
||||| ||||||||||||||||| ||| |||| || | | | ||||||||||||||||
Sbjct 322 AATCCTTATCTTCATCTCCTTCGCCGGTATCAAGAT-CAAGAACATCGAACTCGTCTCTC 380
Query 368 GCGCAGTTCTTCCACGGTTTTATGCGGCGGATGTGAGGAAAGACAGTTTTGATGTGTTTG 427
|||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 381 GCGCCGTTCTTACACGGTTTTACGCGGCGGATGTGAGGAAAGATAGTTTTGAGGTGTTTG 440
Query 428 ATAAGTGT---AAGAGGAAAGTGGTAGTGACGGCGAATCCGATAGTGATGGTGGAGGCGT 484
|||| ||| ||||||||||| || ||||| |||||||||||||||||||| ||| | |
Sbjct 441 ATAAATGTAAGAAGAGGAAAGTAGTGGTGACTGCGAATCCGATAGTGATGGTTGAGCCAT 500
Query 485 TTGTGAAGGATTATCTT-GGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTCAACCCC 543
| || || || ||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 501 TCGTCAAAGACTAT-TTGGGAGGAGATAAAGTTTTGGGAACAGAGATTGAAGTTAACCCC 559
Query 544 AAATCCAAT-AGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTTAA 602
||| | | | | ||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 560 AAAACGA-TGAAAGCTACTGGTTTTGTGAAAAAGCCTGGTGTTCTTGTTGGTGATCTCAA 618
Query 603 GAGGCTAGCCATTTTGAAAGAGTTTGGTGACAAATCACCCGATCTCGGCCTCGGTGATCG 662
||| ||||||| ||||||||||| || || | ||||| ||||| ||||||||||| ||
Sbjct 619 GAGATTAGCCATCTTGAAAGAGTTCGGCGATGACTCACCGGATCTTGGCCTCGGTGACCG 678
Query 663 AACCTCTGATCACGATTTCATGTCCCTCTGCAAGAAAGGCTACATGGTTCATGCGAGCAA 722
||||| |||||||||||||||||| | |||||| |||| |||||||| |||| || |||
Sbjct 679 CACCTCCGATCACGATTTCATGTCCATTTGCAAGGAAGGTTACATGGTGCATGAGACCAA 738
Query 723 GTCAGCCACAACAATTCCAAAAGA-ACGTTTAAAGAACCGTATAGTCTTCCACGACGGGC 781
|||||||||||| | || | ||| | || | |||||||| ||| ||||||| || || |
Sbjct 739 ATCAGCCACAACAGTCCCTATAGAGA-GTCTCAAGAACCGCATAATCTTCCATGATGGCC 797
Query 782 GT-TTAG-CGCAACGTCCAACGCCC-TTAAACGCCATTA-TCACATACCTATGGCTTCCC 837
|| || | | |||||||| || ||| ||||||||| ||| ||| ||||| ||||||||
Sbjct 798 GTCTT-GTC-CAACGTCCGAC-CCCATTAAACGCC-TTAATCATTTACCTTTGGCTTCC- 852
Query 838 TTT-GGTTTCATACTCTCCATCATTC-GCGTCTACTTCAACCTCCCTTTACCTGAACGCT 895
||| || ||||| ||||| || ||| ||||||||||||||||||||||||| |||||||
Sbjct 853 TTTCGGCTTCATGCTCTCTGTC-TTCCGCGTCTACTTCAACCTCCCTTTACCCGAACGCT 911
Query 896 TTGTCCGTTACACCTACGAGATTCTCGGGATCCACTTAACCATTCGTGGCCATCGTCCTC 955
| ||||| ||||| |||||||| ||||| || ||| | || || |||||||| |||||||
Sbjct 912 TCGTCCGCTACACTTACGAGATCCTCGGCATTCACCTCACAATCCGTGGCCACCGTCCTC 971
Query 956 CACCTCCTTCCCCCGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTG 1015
|||||||||||||||||| | ||| |||||||| || || |||||||| ||||| ||||
Sbjct 972 CACCTCCTTCCCCCGGAAAACCTGGAAACCTCTACGTTCTCAACCACCGCACCGCCCTTG 1031
Query 1016 ATCCCATCATCGTTGCCATTGCTCTTGGACGCAAGATCTGTTGTGTTACTTACAGTGTCT 1075
| ||||| ||| | ||||||||||| || || |||||| ||||| ||||| |||||||
Sbjct 1032 ACCCCATTATCATCGCCATTGCTCTCGGCCGTAAGATCACATGTGTCACTTATAGTGTCT 1091
Query 1076 CTCGTCTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGTCA 1135
|||| |||||||| ||||| || || |||||||||||||| || ||||| |||||||||
Sbjct 1092 CTCGCCTCTCCCTGATGCTCTCACCCATTCCTGCTGTTGCTCTGACCCGAGACCGTGTCG 1151
Query 1136 CCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAG 1195
| || || ||| |||||| |||| ||||||||||| || |||||||| ||||| ||||
Sbjct 1152 CTGACGCAGCCCGCATGAGGCAACTCCTCGAGAAAGGTGATTTGGTGATCTGTCCTGAAG 1211
Query 1196 GCACAACGTGCAGAGAAG-AGTATCTTCTGAGATTTAGCGCTCTATTCT-CAGAGCTTAG 1253
|||||||||| |||||| | ||||| || || || || |||||||| | ||||||| ||
Sbjct 1212 GCACAACGTGTAGAGAACCA-TATCTACTAAGGTTCAGTGCTCTATT-TGCAGAGCTGAG 1269
Query 1254 TGACCGGATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGT 1313
|||||||| ||||| || || |||||||| || ||||| |||||||||||||| |||||
Sbjct 1270 CGACCGGATCGTGCCTGTGGCCATGAACTGCAAGCAAGGGATGTTCAACGGGACGACAGT 1329
Query 1314 GAGGGGTGTGAAGTTCTGGGACCCTTACTTCTTTTTCATGAACCCAAGACCAAGCTATGA 1373
|| |||||||| |||||||| || |||||||| ||||||||||| |||| ||||| ||
Sbjct 1330 TAGAGGTGTGAAATTCTGGGATCCGTACTTCTTCTTCATGAACCCCCGACCTAGCTACGA 1389
Query 1374 AGCCACTTTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGCGGCAAGACTCC 1433
|||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 1390 GGCCACTTTCTTGGACCGTTTGCCCGAAGAAATGACGGTAAACGGTGGTGGCAAGACTCC 1449
Query 1434 TATAGAGGTGGCCAATTACGTCCAGAAAGTTATTGGCGCG-GTCTTGGGCTTCGAATGCA 1492
| | |||||||| |||||||| ||||| || || || | | || ||||| |||||||| |
Sbjct 1450 TTTTGAGGTGGCTAATTACGTTCAGAAGGTGATCGGTG-GAGTTTTGGGGTTCGAATGTA 1508
Query 1493 CCGAACTTACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGT 1552
| |||||||| | |||||||| ||||| ||||||||||| || ||||| ||||| ||||
Sbjct 1509 CTGAACTTACAAGGAAGGATAAGTATCTGTTGCTTGGAGGCAACGACGGAAAGGTTGAGT 1568
Query 1553 CTATCA 1558
||||||
Sbjct 1569 CTATCA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5