BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490530
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00355.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 1310 0.0
AT3G13430.1 | Symbols: | RING/U-box superfamily protein | chr3... 60.2 5e-08
> AT4G00355.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G45980.1);
Has 100 Blast hits to 97 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:154888-156376
FORWARD LENGTH=1406
Length=1406
Score = 1310 bits (709), Expect = 0.0
Identities = 971/1088 (89%), Gaps = 56/1088 (5%)
Strand=Plus/Plus
Query 154 ATGGCTGACAAAGATGAAGCAGCTACGCGTGGAAATGATTGGGAAGTTGTTTCTCTTACT 213
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 320 ATGGCTGACAAAGATGAAGCAGCGACGCGTGGAAATGATTGGGAAGTTGTTTCTCTTACT 379
Query 214 GCTTCAGCTTACGCTGCTGCTCCTGGTCCTAAACCAGTTGTTGACTTGAATGATGATCAT 273
|||||||||||||||||||||||||||||||||||||| || |||| ||| |||||| ||
Sbjct 380 GCTTCAGCTTACGCTGCTGCTCCTGGTCCTAAACCAGTAGTGGACTCGAAAGATGATGAT 439
Query 274 CACAAGGAACTTGTTACTCCTTGTTACGAAGCTGAGACATCTCATCCTTTATACATGTCT 333
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 440 CACAAGGAA---GTTACTCCTTGTTACGAAGCTGAGACATCTCATCCCTTATACATGTCT 496
Query 334 CGCCACTTTGTTTTCCCACCAACTGCTCAGCTTGAACCTCCTCCTACTAGTGAGCTTACC 393
||||||||||||||||||||||||| |||||||| | ||||||||| ||||||
Sbjct 497 CGCCACTTTGTTTTCCCACCAACTGGTCAGCTTG-A-----GAATACTAGTGACCTTACC 550
Query 394 GAGGCTAGCAAGAAGATAACCGGGACTCATTGCAAGGAA-GAAGGTGATTTGACTCTCAA 452
||||||||| |||| ||| |||||||||||||| | | ||||||||| ||| ||
Sbjct 551 GAGGCTAGC------TTAACGGGGTCTCATTGCAAGGAAGGGA-GTGATTTGAGTCTGAA 603
Query 453 AGGGTTGGATTTATCTGATGATTTTGGAGGACTTGAGTTTTTCGACGAGAAAGGCAACAA 512
||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||| ||
Sbjct 604 AGGGTTGGATTTATCAGATGATTTCGGAGGACTTGAGTTTTCCGAGGATAAAGGCAAGAA 663
Query 513 AGATGAAAACATTTACACGACAGCTATGACTACTTCTCTGGACGATGAAAGAGCTATTGG 572
||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 664 AGAAGAAAACATTTACACGACAGCTATG---AGTTCTCTGGACGATGAAAGAGCTATCGG 720
Query 573 TGGGTCACACGTGTATGAACTGAACGAACCTGTTCAAGAACCGACCGCGCCTGTCGCTCC 632
||| ||||||||| | | | ||||||||| |||||||||||| |||||| ||||
Sbjct 721 TGGCTCACACGTG--T--A-T----GAACCTGTTGAAGAACCGACCGAGCCTGTTTCTCC 771
Query 633 ATCTGATGTTACACCTGATCTGAATCCTACTAAAGATGATGATAAGCATGAGGTAGCAAA 692
||||||||||||| |||||||||||||| | | | | ||| | |||||||||||||
Sbjct 772 TTCTGATGTTACACTTGATCTGAATCCTA-T-TA-A--A-GAT--G-ATGAGGTAGCAAA 822
Query 693 CGT-GCCTCCTTGCGAAGAAGCCTGGTGGAAAAGAAGCGCTGCGTCTTTGATTGCACAAG 751
| | ||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||
Sbjct 823 C-TCGCCACCTAGCGAAGAAGCTTGGTGGAAAAGAAGCGTTGCCTCTTTGATTGCCCAAG 881
Query 752 CAAAAGAAACTAACACTGTTTGGTCCATCTGCATTGCTGCAGCTGTAATGGGTATTGTGA 811
| ||||||||||| || ||||||||||||||||| || |||||||||||||| |||||||
Sbjct 882 CGAAAGAAACTAATACAGTTTGGTCCATCTGCATAGCCGCAGCTGTAATGGGAATTGTGA 941
Query 812 TTCTTGGCCAACATTGGCAACAGGAGAGGTGGCAGATTTTGCAGCAAAGGTGGGAATCAA 871
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 942 TTCTTGGCCAACATTGGCAACAGGAGAGGTGGCAGATTTTGCAGCAAAAGTGGGAATCAA 1001
Query 872 GCATTGGAAACGAGAAAGCTGGAAGATTAATGGGCCCGATCTCTCGACTGAAACAAGCAT 931
|||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 1002 GCATTGGAAACGAGAAAGCTGGAAGATTGATGGGGCCAATCTCTCGACTAAAACAAGCAT 1061
Query 932 TTGTCGGGGGACAGCGGCGGGATTCATTCATCCGAGGCAGCTCCCAAAACGACCGTTAAA 991
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1062 TTGTCGGGGGACAGCGGCGGGATTCATTCATCCGAGCCAGCGCCCAAAACGACCGTTAAA 1121
Query 992 A-AAGAGAGAAGAAAGGTGATTTACTTTGATGATGACGATAAGAACAAGAGTAGCT-CTT 1049
|| | | || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1122 TCAA-A-ACAA-AAAGGTGAATTACTTTGATGATGACGATAAGAACAAGAGTAGCTTCTT 1178
Query 1050 TGGGGTCGAAAAACATGGATGTATCTGGTGTGTGAATGT-TT-GGTACTTTTACTTCAGG 1107
|||||||||||||||||||||| ||||||||||||||| || ||||||| | |||||||
Sbjct 1179 TGGGGTCGAAAAACATGGATGT--CTGGTGTGTGAATGTGTTTGGTACTTCT-CTTCAGG 1235
Query 1108 TCATGGTTTTTGTACATATTTCTTTGGTGTGAAAAAATCATTTACCCATTTCATTAT-TC 1166
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1236 TCATGGTTTTTGTACATATTTCTTTGGTGTGAAACAATCATTTACCCATTTCATTATCTC 1295
Query 1167 CAATGCC-TATTA-T-TACTTACTCTCTTTATATCATAATCAGATACTCAGTGTCTCCTG 1223
|||||| ||||| | | ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1296 -AATGCCCTATTACTCT-CTTTCTCTGTTTATATCATAATCAGATACTCAGTGTCTCCTG 1353
Query 1224 TTATGTTT 1231
||||||||
Sbjct 1354 TTATGTTT 1361
> AT3G13430.1 | Symbols: | RING/U-box superfamily protein | chr3:4367281-4368820
FORWARD LENGTH=1241
Length=1241
Score = 60.2 bits (32), Expect = 5e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 42 TCATCACCATCATCTTCGTCTTCGTCTTCTTCTTC 76
||||||||||||||||||||||||||||| |||||
Sbjct 446 TCATCACCATCATCTTCGTCTTCGTCTTCATCTTC 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5