BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490532 Length=1688 Score E Sequences producing significant alignments: (Bits) Value AT4G00350.1 | Symbols: | MATE efflux family protein | chr4:151... 2614 0.0 > AT4G00350.1 | Symbols: | MATE efflux family protein | chr4:151919-154130 FORWARD LENGTH=1830 Length=1830 Score = 2614 bits (1415), Expect = 0.0 Identities = 1598/1689 (95%), Gaps = 2/1689 (0%) Strand=Plus/Plus Query 1 AATCCTCCCCACGTAGAGaaaaataaaaaaTAAGATAAAGATTGCCACAACCGGAGAAAA 60 ||||||||||| ||||||||| ||||||| | ||| ||| |||||||||||||| ||||| Sbjct 1 AATCCTCCCCAAGTAGAGAAATATAAAAACTTAGACAAATATTGCCACAACCGGTGAAAA 60 Query 61 TGGAAATCCCGGTTCGAGAGGAGAGAAGATCCTCCTCATCCTCTGCCGGACCATTACCAC 120 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TGGAGATCCCGGTTCGAGAGGAGAGAAGATCCTCCTCATCCTCTGCCGGACCATTACAAC 120 Query 121 AAACCATCGCCTTAGCAGCTGATGACGCCATCGATAGCGGTCCTTCCTCTCCGCTTCTCG 180 |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 121 AAACCATCTCCTTAGCAGCTGACGACGCCATCGATAGCGGTCCATCCTCTCCGCTTGTCG 180 Query 181 TCAAAGTCTCTGTCTTCGAAACAGAGCATGAGACGACAAAGCTTCAT-CACGCGCCGTCA 239 ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| Sbjct 181 TCAAAGTCTCTGTCTTCGAAACAGAGCATGAGACGACCAAGCTT-ATCCACGCGCCGTCA 239 Query 240 ACTCTGCTCGGAGAAACCACCGGAGACGCCGATTTTCCTCCGATTCAAAGCTTTAGAGAT 299 ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 240 ACTCTGCTCGGTGAAACCACCGGAGACGCTGATTTTCCTCCCATTCAAAGCTTTAGAGAT 299 Query 300 GCTAAACTTGTCTGTGTGATCGAAACGTCCAAGCTTTGGGAAATTGCTGCACCAATAGCT 359 ||||||||||| |||||| | |||||||| |||||||||||||| |||||||| |||||| Sbjct 300 GCTAAACTTGTTTGTGTGGTTGAAACGTCTAAGCTTTGGGAAATAGCTGCACCTATAGCT 359 Query 360 TTCAATATTCTTTGCAATTACGGTGTCAACTCCTTCACAAGCATCTTCGTCGGCCATATC 419 ||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 360 TTCAACATTCTTTGTAATTACGGTGTTAACTCCTTCACAAGCATCTTCGTTGGCCATATC 419 Query 420 GGCGATCTTGAGCTCTCCGCCGTCGCCATCGCTCTCTCCGTCGTCTCCAATTTCTCCTTT 479 |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| Sbjct 420 GGCGATCTTGAGCTTTCTGCCGTCGCCATCGCTCTCTCCGTCGTCTCTAATTTCTCCTTT 479 Query 480 GGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAAACACTATGCGGGCAGGCGTTTGGAGCG 539 ||||||||||||||||||||||||||||||||||| |||| || || |||||||||||| Sbjct 480 GGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAAACGTTATGTGGACAAGCGTTTGGAGCG 539 Query 540 GGACAAATGGATATGTTAGGCGTTTACATGCAGCGTTCATGGCTTATCCTCCTGGGAACT 599 |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||| Sbjct 540 GGACAAATGGATATGTTAGGTGTTTATATGCAGCGTTCTTGGCTTATCCTCCTCGGAACT 599 Query 600 TCCGTCTGCTTGCTTCCACTCTACATCTACGCAACTCCTCTTCTCATTTTACTAGGCCAA 659 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 600 TCCGTCTGCTTGCTTCCTCTCTACATCTACGCAACTCCACTTCTCATTTTACTCGGCCAA 659 Query 660 GAACCGGAAATTGCAGAGATCTCTGGCAGATTTACAACACAAATCATCCCTCAAATGTTT 719 ||||| ||||| |||||||||||||||| ||| || |||||||||||||||||||||||| Sbjct 660 GAACCCGAAATCGCAGAGATCTCTGGCAAATTCACTACACAAATCATCCCTCAAATGTTT 719 Query 720 GCGCTCGCCATCAATTTCCCAACTCAGAAGTTTCTCCAGTCACAGAGCAAAGTCGGGATC 779 |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 720 GCGCTCGCTATCAACTTCCCGACTCAGAAGTTTCTCCAGTCACAGAGCAAAGTAGGGATC 779 Query 780 ATGGCCTGGATCGGTTTCTTCGCTTTGACTCTTCACATTTTCATCCTCTACCTCTTTATA 839 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 780 ATGGCATGGATCGGTTTCTTCGCTTTGACCCTTCACATTTTCATCCTCTACCTCTTTATA 839 Query 840 AACGTTTTCAAGTGGGGGCTAAACGGTGCAGCGGCTGCGTTTGATGTCTCGGCTTGGGGA 899 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 840 AACGTTTTCAAGTGGGGGCTAAACGGTGCAGCGGCTGCATTTGATGTCTCGGCTTGGGGA 899 Query 900 ATCGCAATCGCGCAGGTTGTTTATGTTGTAGGTTGGTGTAAAGACGGTTGGCGAGGGCTG 959 ||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 900 ATCGCGATCGCGCAGGTTGTTTATGTTGTAGGGTGGTGTAAAGACGGTTGGAAAGGGCTG 959 Query 960 TCTTGGTTAGCGTTTAAAGACGTTTGGCCGTTTCTGAAACTGTCTTTTGCGTCTGCGGTT 1019 ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 960 TCTTGGTTAGCGTTTCAAGACGTTTGGCCGTTTTTGAAACTGTCGTTTGCGTCTGCGGTT 1019 Query 1020 ATGCTTTGTCTTGAGATATGGTACTTCATGACGATCATTGTCTTAACCGGACATCTTGAA 1079 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1020 ATGCTTTGTCTAGAGATTTGGTACTTCATGACGATCATTGTCTTAACTGGACATCTTGAA 1079 Query 1080 GACCCTGTCATAGCCGTTGGATCTCTCTCAATCTGTATGAACATTAATGGATGGGAAGGA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GACCCTGTCATAGCCGTTGGATCTCTCTCAATCTGTATGAACATTAATGGATGGGAAGGA 1139 Query 1140 ATGTTGTTCATAGGAATCAATGCAGCTATAAGTGTTAGAGTGTCGAATGAGCTAGGATCG 1199 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1140 ATGTTGTTCATAGGAATCAATGCAGCTATAAGTGTTAGGGTGTCGAATGAGCTAGGATCG 1199 Query 1200 GGACATCCACGAGCTGCAAAATACTCGGTGATCGTAACAGTGATAGAGTCTCTAATCATT 1259 ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 1200 GGACATCCACGAGCTGCGAAATACTCCGTGATCGTAACGGTGATAGAGTCTCTCGTCATT 1259 Query 1260 GGAGTAGTGTGTGCAATTGTAATTCTCATAACAAGAGATGAGTTTGCAGTAATTTTTACG 1319 |||||||||||||||||||||||||| |||||| ||||||| ||||| || ||||||||| Sbjct 1260 GGAGTAGTGTGTGCAATTGTAATTCTGATAACACGAGATGACTTTGCTGTGATTTTTACG 1319 Query 1320 GAGAGCCAAGAGATGAGAAAGGCAGTAGCTGATCTTGCGTACCTTCTCGGTATAACGATG 1379 ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1320 GAGAGTGAAGAGATGAGAAAGGCGGTAGCTGATCTTGCGTACCTGCTCGGTATAACGATG 1379 Query 1380 ATTCTCAACAGTTTACAACCGGTTATATCAGGTGTTGCAGTAGGAGGAGGATGGCAAGCA 1439 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1380 ATTCTCAACAGTTTACAACCAGTTATATCAGGAGTTGCAGTAGGAGGAGGATGGCAAGCA 1439 Query 1440 CCGGTGGCTTATATCAACTTGTTTTGTTACTACGCTTTTGGATTACCTCTAGGGTTTTTG 1499 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CCGGTGGCTTATATAAACTTGTTTTGTTACTACGCTTTTGGATTACCTCTAGGGTTTTTG 1499 Query 1500 CTAGGCTATAAAACAAGACTTGGCGTACAGGGGATATGGATTGGTATGATATGTGGGACT 1559 |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TTAGGTTATAAAACAAGCCTTGGCGTACAGGGGATATGGATTGGTATGATATGTGGGACT 1559 Query 1560 AGTCTTCAGACTCTCATCCTTTTGTACATGATATACATAACCAATTGGAACAAAGAGGTG 1619 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1560 AGTCTTCAGACTCTCATACTTTTGTACATGATCTACATAACCAATTGGAACAAAGAGGTG 1619 Query 1620 GAACAAGCTTCGGAGAGAATGAAACAATGGGGAGCTGGATACGAGGAATTAGAAAAAATA 1679 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1620 GAACAAGCTTCGGAGAGAATGAAACAATGGGGAGCTGGATATGAGAAATTAGAAAAAATA 1679 Query 1680 GCAACTTAA 1688 ||||||||| Sbjct 1680 GCAACTTAA 1688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83433305790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5