BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490537
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00310.1 | Symbols: MEE46, EDA8 | Putative membrane lipoprot... 1306 0.0
> AT4G00310.1 | Symbols: MEE46, EDA8 | Putative membrane lipoprotein
| chr4:133643-135469 FORWARD LENGTH=1357
Length=1357
Score = 1306 bits (707), Expect = 0.0
Identities = 865/939 (92%), Gaps = 19/939 (2%)
Strand=Plus/Plus
Query 101 tttGTGGGT--AAAATGAGGATTCGGAAGAACACGAAGCTGTCATCGGTTCTTTTAGCGA 158
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 202 TTT-TGGGTAAAAAATGAGGATTCGGAAGAACACGAAACTGTCATCGGTTCTTTTATCGA 260
Query 159 CAGCAGGTTGCGGCGGAGAGAGACCGGACACGTATGTCTGTCACTTAAACCAGTCTCCAT 218
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 261 CAGCAGGTTGCGGCGGAGAGAGACCGGACACGTATGTGTGTCACTTAAACCAGTCTCCAT 320
Query 219 GGGATGTGATTCCGGTTTCTTCCTCCGGCGATTGCGAGTTAACTAACCTACTCGACTCGT 278
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 321 GGGATGTGATTCCTGTTTCTTCCTCCGGCGATTGCGAGTTAACTAACCTAGTCGACTCGT 380
Query 279 CGTGGTTCCTTCCTTTATCATCTTCG---TCTTCTTCTTCTCCGCCTCTCATTCGCAAGT 335
|||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 381 CGTGGTTCCTCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGT 440
Query 336 TCAATGGAGATGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGGCGCTG 395
||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 441 TCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTG 500
Query 396 CTCAAAGATTTAATAGCTCCATGAGAAGTAATCACAGTCTTGTCTCCGTCGAGAAGCTTA 455
||||||| |||||||||||| |||| |||||||| ||||| |||||||| ||||||||||
Sbjct 501 CTCAAAGGTTTAATAGCTCCGTGAGTAGTAATCAAAGTCTAGTCTCCGTAGAGAAGCTTA 560
Query 456 ATCTCAATGCGGC---GGAGGATAAGTACGATACATCCCCGGGAGTTGAAGACCCAATGG 512
||||||||||||| |||||||||||||| || ||| |||| |||||||||||||||||
Sbjct 561 ATCTCAATGCGGCGGAGGAGGATAAGTACGCTATATCGCCGGAAGTTGAAGACCCAATGG 620
Query 513 ATCAGAGCGATAG-CTATGACAAGAAATCTGAAGCTCGCGAGCCTAATTCGCCGGTCAAA 571
||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 621 ATCAGAGCGAT-GACTATGACAAGAAATCCGAAGCTCTTGAGCCTAATTCGCCGGTCAAA 679
Query 572 ACCTCCGGCGATGATGACAAAGTGGCTGTAACAATTCCGGCGCCGCCTAAACGTGGACGG 631
|| ||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||
Sbjct 680 ACTTCCGGTGATGATGAAAAAGTGGTTGTAACAATTCCGACGGCGCCTAAACGTGGACGG 739
Query 632 CCACGTGGTTCGGGCAAGAAAGCTTCCGCTACC-GCATTGAAGAATCCGTACGAGTTTTA 690
|||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 740 CCACGTGGTTCGGGAAAGAAAGTTTCCGCT-CCGGCATTGAAGAATCCGTACGAGTTTTA 798
Query 691 TTATTACTCTGGTTTCGGGCCACAGTGGGGTAGGAAAAGAGGCGGCTCCGACGACGAGAA 750
|||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 799 CTATTACTCTGGTTTCGGGCCACGGTGGGGGAGAAAAAGAGGCGGCTCCGACGACGAGAA 858
Query 751 GATGGTTACGAGCGATAATAAAAAGAGTAGAAGTAGCACTACTAGTAGCAGTACTAGTGA 810
|||||||| | ||||| |||||||||||||||||| | |||||||||| ||||||
Sbjct 859 GATGGTTATAAACGATAGTAAAAAGAGTAGAAGTAG--C-GCTAGTAGCAG---TAGTGA 912
Query 811 TGAAGAGGGTAATAATACGGCGGCGTTTGGAGGTGGGAGTGTTAGTTTTGATGAGTTTGA 870
||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 913 CGAAGACGGTCATAAAACGGCGGCGTTTGGAGGTGGGAGTGTGAGTTTCGACGAGTTTGA 972
Query 871 TTTTGTGGAAGAGGATTATGACGTAATGGATCAAGATCAAGAAAGTGATCATGggaggaa 930
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 973 TTTTGTGGATGAGGATTATGACGTAATGGAACAAGATCAAGGAAGTGATCATGGGAGGAA 1032
Query 931 gaaaaataaagagaagatgataatgatgaagaagacgatgaagagaggaaggaagCCCGT 990
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1033 GAAAAAGAATGAGAAGATGATAATGATGAAGAAGACGATGAAGAAAGGAAGGAAGCCCGT 1092
Query 991 AAAGGAAAGGTCTTTGAAATCCCTCATGTGAAATATTTT 1029
|||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AAAGGAAAGGTCTTTGAAATCCCTCATGTGAAATATTTT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5