BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490539

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00305.1 | Symbols:  | RING/U-box superfamily protein | chr4...   381    2e-105


> AT4G00305.1 | Symbols:  | RING/U-box superfamily protein | chr4:131550-131930 
FORWARD LENGTH=381
Length=381

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 257/280 (92%), Gaps = 9/280 (3%)
 Strand=Plus/Plus

Query  1    TCGGCATCTTCGGGGAGTACCATCACCGGAATAAACAAGATTCCGATTGACGATATGCTT  60
            ||||||||||| ||||| || |||| | |     ||||||||||||| ||||||||||||
Sbjct  106  TCGGCATCTTCAGGGAGCACTATCATC-G-----ACAAGATTCCGATGGACGATATGCTT  159

Query  61   CCGGCGACAAAATTCGAGG--AGAT-GTCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA  117
            ||||| ||||| |||||||  | ||  |||||||||||||||||||||||||||||||||
Sbjct  160  CCGGCAACAAAGTTCGAGGATATATCATCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA  219

Query  118  TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT  279

Query  178  TATCACAAGACTTGTATTGACCGTTGGATCCAAGACGATATGATGACATGTCCTTTGTGT  237
            ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  280  TATCACAAGACGTGTATTGACCGTTGGATCCAAGACGATAAGATGACGTGTCCTTTGTGT  339

Query  238  AGGACCCCGATCGTCCCTGATTTCTACTTTTTTCGTTTGT  277
            |||||||||||||| ||||||||||| |||||||||||||
Sbjct  340  AGGACCCCGATCGTTCCTGATTTCTATTTTTTTCGTTTGT  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5