BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490539 Length=277 Score E Sequences producing significant alignments: (Bits) Value AT4G00305.1 | Symbols: | RING/U-box superfamily protein | chr4... 381 2e-105 > AT4G00305.1 | Symbols: | RING/U-box superfamily protein | chr4:131550-131930 FORWARD LENGTH=381 Length=381 Score = 381 bits (206), Expect = 2e-105 Identities = 257/280 (92%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 1 TCGGCATCTTCGGGGAGTACCATCACCGGAATAAACAAGATTCCGATTGACGATATGCTT 60 ||||||||||| ||||| || |||| | | ||||||||||||| |||||||||||| Sbjct 106 TCGGCATCTTCAGGGAGCACTATCATC-G-----ACAAGATTCCGATGGACGATATGCTT 159 Query 61 CCGGCGACAAAATTCGAGG--AGAT-GTCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA 117 ||||| ||||| ||||||| | || ||||||||||||||||||||||||||||||||| Sbjct 160 CCGGCAACAAAGTTCGAGGATATATCATCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA 219 Query 118 TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT 279 Query 178 TATCACAAGACTTGTATTGACCGTTGGATCCAAGACGATATGATGACATGTCCTTTGTGT 237 ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 280 TATCACAAGACGTGTATTGACCGTTGGATCCAAGACGATAAGATGACGTGTCCTTTGTGT 339 Query 238 AGGACCCCGATCGTCCCTGATTTCTACTTTTTTCGTTTGT 277 |||||||||||||| ||||||||||| ||||||||||||| Sbjct 340 AGGACCCCGATCGTTCCTGATTTCTATTTTTTTCGTTTGT 379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12717740497 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5