BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490540
Length=2533
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00300.1 | Symbols: | fringe-related protein | chr4:126509-... 3642 0.0
> AT4G00300.1 | Symbols: | fringe-related protein | chr4:126509-130331
FORWARD LENGTH=2563
Length=2563
Score = 3642 bits (1972), Expect = 0.0
Identities = 2359/2541 (93%), Gaps = 46/2541 (2%)
Strand=Plus/Plus
Query 26 AAAAACAACTTTCTTATGACAAATCTAATAAACCCTTTT-TTCCTTCTTCTTCATCTCCA 84
|||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 12 AAAAAC-ACTTTCTTACGACAAATCTAATAAACCCTTTTATT-CTTCTTCTTCATCTCCA 69
Query 85 TGCTCGTTCACGGCGATCGTCCTCCTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 144
|| || ||||| || |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 70 TGTTCCTTCACAGCCATCGTCGTCTTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 129
Query 145 AGTTTCATCTCATTTCTAAACCCATATTCTCCTTCTAAAAT-CCCCAGTTCTCTCCTCGT 203
||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||||
Sbjct 130 AGTTTCATCTCTTTTCTAAACCCATATTCACCTTCT-AAATCCCCCAATTCTCTCCTCGT 188
Query 204 ACCCGTTATCCGTCTCGGGTCGGGTCAAAAACCTGAGGAACAAACAGAGCTCAAACACAT 263
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 189 ACCCGTTATCCGTCTCGGGTCGGGTCAAACACCTGAGGAACAAACGGAGCTCAAACACAT 248
Query 264 TGTCTTCGGCATCGCGGCGTCCTCAGATCTGTGGAAGCATCGCAGAGAATACGTGAAAAC 323
|||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 249 AGTCTTCGGAATCGCCGCGTCTTCAGATCTATGGAAGCATCGTAGAGAATACGTGAAAAC 308
Query 324 ATGGTGGAAACCTAACGGAGTAATGAACGGCGCCGTTTGGCTCGACAAACCCGTCAATGA 383
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 309 ATGGTGGAAACCTAACGGAGTCATGAACGGCGCCGTTTGGCTCGACAAACCCATCAACGA 368
Query 384 TTCCGTTTCTTCTTCATCAGCCTTGCCTCAGATCAGAATCTCCTCCGACACGTCAAGTTT 443
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 369 CACCGTTTCTTCTTCATCAGCTTTGCCTCAGATCAGAATCTCTTCCGACACGTCGAGTTT 428
Query 444 CAAGTACCGTTACCGTAACGGTCACAGATCGGCGATCAGGATCACGAGAATCGTGTCGGA 503
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 429 CAAGTACCGTTACCGTAACGGTCACAGATCAGCGATCAGGATCACGAGAATCGTGTCCGA 488
Query 504 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTGGTGATGGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 489 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTTGTGATGGG 548
Query 564 TGACGACGACACCGTGTTTTTCACGGAGAATCTTGTTAGGGTTTTGAGAAAATACGATCA 623
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 549 TGACGACGATACCGTGTTTTTCACGGAAAATCTTGTTAGGGTTTTGAGAAAGTACGATCA 608
Query 624 TAAACAGTTTTATTACATCGGAGCTCCGTCGGAGAGTCATTTGCAGAATCTTCATCAGTT 683
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 609 TAAACAGTTTTATTACATCGGAGCTCCGTCCGAGAGTCATTTGCAGAATCTTCATCAGTT 668
Query 684 TTCTTACGGAATGGCGTACGGAGGAGGAGGGTTTGCTATAAGTTATCCGTTGGCCAAGGT 743
|||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 669 TTCTTATGGAATGGCGTACGGTGGAGGAGGGTTTGCTATAAGTTATCCATTAGCCAAGGT 728
Query 744 TTTGGAGAAAATGCAAGATCGTTGCATCGAGAGATACTCCGATTTGTACGGATCCGATGA 803
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 729 TTTGGAGAAGATGCAAGATCGGTGTATCGAGAGATACTCCGATTTGTACGGATCCGATGA 788
Query 804 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 848
Query 864 TCAGTTCGATGTATACGGGAATCTCTTAGGGCTATTATCAGTCCATCCACAAGCGCCAAT 923
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 849 TCAGTTTGATGTATACGGGAATCTCTTAGGGCTATTATCTGTCCATCCACAAGCACCAAT 908
Query 924 AGTGTCCATCCATCACCTAGACGTAGTGGAGCCTATATTCCCAAAAACAAACCGAGTCAA 983
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 909 AGTATCAATCCATCACCTAGACGTAGTGGATCCTATATTCCCAAAAACAAACCGAGTCAA 968
Query 984 CGCATTAAAGAAACTAATGATCCCAGCAAAACTCGATTCAGCGAGTCTTCTCCAACAATC 1043
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 969 CGCATTAAAGAAGCTAATGATCCCAGCGAAACTCGATTCAGCGAGTCTTGTCCAACAATC 1028
Query 1044 GGTATGCTATGATAAAAGTCGTCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1103
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GGTATGCTATGATAAGAGTCATCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1088
Query 1104 AATCACGCGTACGTATATGCCAGCAAG-ATTTATGGA-GATGCCCACTCGTACTTTTAAT 1161
||||||||||||||||||||||||||| || ||||| | |||| ||||| |||||||||
Sbjct 1089 AATCACGCGTACGTATATGCCAGCAAGGATG-ATGGAAG-TGCCTACTCGCACTTTTAAT 1146
Query 1162 GATTGGCACAAACGCCGCGATTTCACTAATCTTGCTTTCAACACACGTCCCATAACATGG 1221
||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1147 GATTGGCACTTACGTAGCGATTTCACTAATCTTGCATTCAACACACGTCCGGTAACATGG 1206
Query 1222 ACGGATTGTCAGCGTCCGCGTGTGTTTTATCTCTCTCATGCGTTTAGCAA-T-T-CTTCT 1278
||||||||||||||||| |||||||||||| |||||||||||||||| || | | |||||
Sbjct 1207 ACGGATTGTCAGCGTCCTCGTGTGTTTTATTTCTCTCATGCGTTTAGTAACTCTTCTTCT 1266
Query 1279 ---GATACAACGACGATTA-CCGGATATTTGAGGCACAACGAATGGTATCCTAAATGTGA 1334
|||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||
Sbjct 1267 TCTGATACAACGACGATTAGCCA-ATACTTGAGGCACGACGAATGGTATCCTAAATGTGA 1325
Query 1335 TTGGGGAATCGCAGATCCTTCCGACATCAATCAGATATTTGTCTACAAAAGGCCTACTCC 1394
||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1326 ATGGGGAATCGCGGATCCTTCCGAGATCAATCAGATATTTGTCTACAAAAAGCCTACTCC 1385
Query 1395 GGATAGGTGGAACAAGGTTGTTATCAGGTTTTTTCCTAGCAAAGATTCGAACTTTGCATT 1454
||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1386 GGATAGGTGGAGCAAGGTTGTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATT 1445
Query 1455 CGTTAATGCCATTGAAGTTATATCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1514
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CGTTAATGCTATTGAAGTTATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1505
Query 1515 TGTATCTCATGATGGAACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGCAAGTTGT 1574
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1506 TGTATCTCATGATGGGACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGT 1565
Query 1575 GTACAGAATCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1634
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GTATAGAGTCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1625
Query 1635 TTGGGTTACTGATGATGAATTCTTTAAAACCGGTGATGGGTCGTCTGAGAAATCTTACTT 1694
||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1626 TTGGGTTACTGATGAAGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTTACTT 1685
Query 1695 CACCGGTAGGATTAAGTATAGGCCTGGAGGGGCGAGTCGCGAAGTTGGTCCTGATAATGT 1754
|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1686 CACCGGGAGGATTAAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGT 1745
Query 1755 CTATAACACTGCTCGTGTTGGTAAAAGAAGCA-TCGGATTGGTCGATATGAGTTGGGATT 1813
|| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||
Sbjct 1746 TTACAACACTGCTCGTGTTGGTAAAAGAAGCAAT-GGATTGGTTGATATGAGTTGGGGTT 1804
Query 1814 TCAAGGTGAGCGCGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1873
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 TCAAGGTGAATGTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1864
Query 1874 AATCACTCGGCAGGCTATACTTT-AATGTTTACATTAACGGGAACTTGGCGTACCAAGAT 1932
|||| ||||||||||| || ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1865 AATCTCTCGGCAGGCTTTA-TTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGAT 1923
Query 1933 TTCGATATCTCATACGCTGCGGATGATGTCCTTGCTTCTCCGTATTACATTGATTTTGTG 1992
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1924 TTCGATATCTCATACGCTGCGGATAATGTCCTTGCTTCTCCGTATTACATTGATTTCGTG 1983
Query 1993 GTGGATGCTACTGCTGAT-ACCAACAGCCCTTTGGGATCATCGATAACCGTAAGTGTTGG 2051
|||||||||||||||||| || |||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1984 GTGGATGCTACTGCTGATGAC-AACAACCCTTCAGGATCGTCGATAACCGTTAGTGTTGG 2042
Query 2052 ACCATCAAACAAGACTAATGTTGATG-AACACGGAGTTGATGCGATATTGAACGGTGTTG 2110
||||||||||||||||| |||||||| || | ||||| ||||||||||||||||||||||
Sbjct 2043 ACCATCAAACAAGACTAGTGTTGATGGAA-ATGGAGTGGATGCGATATTGAACGGTGTTG 2101
Query 2111 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACGGAAATGA 2170
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2102 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACAGAGATGA 2161
Query 2171 TTCTGAGTACTTGCCCGAATAGAAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2230
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2162 TTCTGAGTACTTGCCCAAATAGGAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2221
Query 2231 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGA-AGGTTAAGGATCAGTAT 2289
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2222 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGAGAG-TTAAGGATCAGTAT 2280
Query 2290 GGCTGGACAAAGTTGTCCATGGATATCCTTGAAGATAATCCCAAGTCCGGGAATCAATTT 2349
|||||||||||| |||||||||| | |||||||||||| ||||||| ||||||||||||
Sbjct 2281 GGCTGGACAAAGCTGTCCATGGACGTGCTTGAAGATAATTCCAAGTCAGGGAATCAATTT 2340
Query 2350 ACAGCAAGAAAGGCTTGAAGATGCTTTTGCTTGTTGAATATA--T-T-AACAATCTACTT 2405
||||||||||||||||||||||||||||| |||||||||||| | | |||| | ||||
Sbjct 2341 ACAGCAAGAAAGGCTTGAAGATGCTTTTGTTTGTTGAATATACGTATTAACAGTGGACTT 2400
Query 2406 CTTTCTTGAGTATTTACTACTTTTGATATGATGGAAT--AATTTTCACAAGGGTGTTGAT 2463
| ||||||||||||||||||||||||| ||| ||| |||||||| |||||||| ||
Sbjct 2401 CCTTCTTGAGTATTTACTACTTTTGAT--GATACAATGGAATTTTCATAAGGGTGTCAAT 2458
Query 2464 GTGTTGTTTATATATAT--GT--ATCT----GG--TATATTTATTCAATGATAT-TGGAG 2512
||||||||||||||||| || |||| || ||| |||||||||||| | |||||
Sbjct 2459 GTGTTGTTTATATATATATGTGTATCTATCTGGCGTATTTTTATTCAATGACAAATGGAG 2518
Query 2513 AGACTCGATATGTAATTTTCG 2533
|||||| ||||||||||||||
Sbjct 2519 AGACTCAATATGTAATTTTCG 2539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125718359158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5