BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490543
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein |... 2143 0.0
> AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein
| chr4:97499-99353 FORWARD LENGTH=1760
Length=1760
Score = 2143 bits (1160), Expect = 0.0
Identities = 1352/1446 (93%), Gaps = 7/1446 (0%)
Strand=Plus/Plus
Query 1 GTCATCAATGGAAGCTTCTCTACCCGAAGAGGTGCTTCAGCCGCTGCTACATGCGTCGGA 60
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 23 GTCGTCAATGGAAGCTTCTCTACCGGAAGAGGTGCTTCAGCCGCTTCTACATGCTTCAGA 82
Query 61 TTTATCATACTCTCTAGAAGGTTGCTTGAAGTTTCTTCTAGAGTCTTCCAAGACCGATTC 120
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 83 TTTATCATACTCTCTAGAAGATTGCTTGAAATTTCTTCTAGAGTCTTCCAAGACCGATTC 142
Query 121 AGGCCGTTCCGATCTCGCTTCCAAGTGTATCCTTCCGTCGATCCTCCGTCTTCTTCAGCT 180
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 143 AGGTCGTTCCGATCTCGCTTCCAAGTCTATACTTCCGTCGATCCTCCGTCTTCTTCAGCT 202
Query 181 TCTTCCTTACCCATCTTCCCGCCATTATCTAAATCTCTCTCTGAAAGTCCTCCGCAACCT 240
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 203 TCTTCCTTACCCATCTTCCCGCCATTATCTGAATCTCTCTCTGAAGGTCCTTCGAAACCT 262
Query 241 ATGCGCCGGCGAGGTTTCGAATCAGAACTCTTTCGTCGATCACGACGGTTCTGTTATCGT 300
||||| || |||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 263 CTGCGCAGGTGAGGTTTCGAATCAGAACTCTTTCGTCGATCATGACGGCTCTGCTATCGT 322
Query 301 CTCCGAGTTGCTTGATTCCGCCATTGCGGATTTTGAAACTGTTAGGTTCGGATTGCAGGT 360
|||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 323 CTCCGACTTGCTTGATTCCGCCATTGCGGATTTCGAGACAGTTAGGTTCGGATTACAGGT 382
Query 361 TCTAGCGAACGTTGTATTGTTCGGAGAGAAACGTCAGAGAGATGTGTGGCTCCGCTTTTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 383 TCTAGCGAACGTTGTATTGTTCGGAGAGAAACGTCAGAGAGATGTGTGGCTCCGATTTTA 442
Query 421 CCCGGAGAGGTTCTTATCAATCGCTAAGATTAGGAGGCGTGAAACCTGTGATCCTCTGTG 480
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 443 CCCGGAGAGGTTCTTATCAATCGCTAAGATTAGGAAACGTGAAACATTTGATCCTCTGTG 502
Query 481 TATGATTTTGTATACGTGCTTTGATGGAAGCTCAGAGATTGCTTCAGCGCTTTGCAGCAG 540
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||| |
Sbjct 503 TATGATTTTGTATACTTGCGTTGATGGAAGCTCAGAGATTGCTTCAGAGCTTTGTAGCTG 562
Query 541 -CGAAGGGCTCACCATCATCGCTGAAACTCTACGGACTTCATCTTCCGTTGGGTCTGTGG 599
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 563 TC-AAGGGCTCACCATCATCGCTGAAACTCTACGGACTTCCTCTTCCGTTGGGTCTGTGG 621
Query 600 AGGATTATTGGCTCAAATTACTGGTTTCGAGAATCTGTGTTGAAGACT-ATTACTTCCCC 658
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
Sbjct 622 AGGATTATTGGCTCAAGTTACTGGTTTCGAGAATCTGTGTTGAAGA-TGGTTACTTCCTC 680
Query 659 AAGCTCTTCTCCAAGTTATACAAAGTTGCTGAAAATGAGAAATTTACATCAGAGCAAGCC 718
||||||||||| || |||||| ||| |||||||||||||| |||| ||||||||||||||
Sbjct 681 AAGCTCTTCTCTAAATTATACGAAGATGCTGAAAATGAGATATTTTCATCAGAGCAAGCC 740
Query 719 TTTCTTCTGAGGATGGTGTCTGATATTGCAAATGAGCGGATAGGAAAAGTGGCAATCCCC 778
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 741 TTTCTTGTGAGGATGGTGTCTGATATTGCTAATGAGCGGATAGGAAAAGTGTCAATCCCC 800
Query 779 AAGGATACAGCTTCTTCAATTCTCGGATTATTTAAGCAATCAGTTGACGTTTTCGATTTT 838
||||||||||||| ||| ||||||||||| |||| |||||||||||| ||||| ||||||
Sbjct 801 AAGGATACAGCTTGTTCGATTCTCGGATTGTTTAGGCAATCAGTTGATGTTTTTGATTTT 860
Query 839 GTTTCGGGTGAAAGATCCGAGCTTCCAACGGGTTCAACTATAGTAGACGTGATGGGCTAC 898
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 861 GTTTCGGGTGAAAGATCGGAGCTTCCAACGGGTTCAACTATAGTAGATGTGATGGGCTAC 920
Query 899 TCTCTGGTGATAATAAGGGATGCTTGCGCTGGAGGAAGCCTTGAAGAACTCAACAAGGAC 958
|||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||
Sbjct 921 TCTCTGGTGATAATAAGGGATGCTTGTGCTGGAGGACGTCTTGAAGAACTCAAGGAGGAC 980
Query 959 AACAAGGATTCCGGTGATACTGTTGAGTTGCTCTTGTCCTCTGGACTAATAGAGCTCCTC 1018
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 981 AACAAGGATTCAGGTGATACTGTTGAATTGCTCTTGTCCTCTGGACTAATAGAACTTCTC 1040
Query 1019 CTTGATCTGCTTCGCAAACTTGATCCTCCAACAACTATAAAGAAGGCTCTAAACCAGAGT 1078
|||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1041 CTTGATCTGCTTAGTAAACTTGATCCTCCAACAACAATAAAGAAGGCTTTAAACCAGAGT 1100
Query 1079 CCTA---CTTCTTCTTCTTCATTTAAGCCCTGCCCTTACAGAGGATTCAGGAGAGATATT 1135
|||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1101 CCTAGTTCTTCTTCTTCTTCATTAAAGCCGTGTCCTTACAGAGGATTCAGGAGAGATATT 1160
Query 1136 GTGTCGGTGATTGGGAACTGCGCGTACAGAAGAAAAGAGGTACAAGATGAGATCAGGGAG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GTGTCGGTGATTGGGAACTGCGCGTACAGAAGAAAAGAGGTACAAGATGAGATCAGGGAG 1220
Query 1196 AGTGATGGGCTCGTCCTAATGTTGCAGCAGTGTGTGACCGATGATGAGAACCCATTCTTG 1255
|| ||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1221 AGAGATGGGCTCTTTTTAATGCTGCAGCAGTGTGTGACCGATGATGAGAACCCGTTCTTG 1280
Query 1256 AGAGAATGGGGCTTGTGGTGTGTGAGAAATTTGCTGGAAGGGAACCCAGAAAACCAGGAA 1315
||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 1281 AGAGAATGGGGCTTGTGGTGTATAAGAAATTTACTGGAAGGGAACCCTGAAAACCAGGAA 1340
Query 1316 GTGGTGGCTGAGTTGGAGATTAAAGGCTCTGTTGATGTGCCTCAACTCCGTGAAATTGGT 1375
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1341 GTAGTGGCTGAGTTGGAGATTAAAGGCTCTGTGGATGTGCCTCAACTCCGTGAAATTGGT 1400
Query 1376 CTCAGAGTTGAAATTGATCCTAAAACAGCCAGGCCAAAGCTTGTCAACGACACCTGAAGC 1435
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1401 CTCAGGGTTGAAATTGATCCTAAAACAGCCAGGCCAAAGCTTGTCAATGACACCTGAAGC 1460
Query 1436 TTCATT 1441
||||||
Sbjct 1461 TTCATT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5