BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490544
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00230.1 | Symbols: XSP1 | xylem serine peptidase 1 | chr4:9... 3579 0.0
> AT4G00230.1 | Symbols: XSP1 | xylem serine peptidase 1 | chr4:93923-97454
FORWARD LENGTH=2427
Length=2427
Score = 3579 bits (1938), Expect = 0.0
Identities = 2190/2310 (95%), Gaps = 24/2310 (1%)
Strand=Plus/Plus
Query 9 GTCAAAATGTTCTCGTCATCATCATCTACTTGTTCTTTTTATTGTTCTTCTTGATGTACT 68
||||||||||||| | ||||||||||||||||||||| ||| || ||| | | ||
Sbjct 21 GTCAAAATGTTCTTGCCATCATCATCTACTTGTTCTTGTTA-TG-----GTTG-T-T-CT 71
Query 69 TTCGATATCACCAGGATATGCTTCAGCCGAAGATGAACATGCAAAGGATTTCTATATCAT 128
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TTGGATATCACCAAGATATGCTTCAGCCGAAGATGAACATGCAAAGGATTTCTATATCAT 131
Query 129 ATATTTGGGAGATCGACTGGATAATACAGAAGAAGCTATCAAGAGACACATAAATCTTCT 188
||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 132 ATATTTGGGAGATCGACCGGATAATACAGAAGAAACTATCAAGACACACATAAATCTTCT 191
Query 189 CTCGTCTTTGAATATGAGCCAAGAAGAAGCAAAGGAAAGAAAAGTATATAGTTACACTAA 248
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATCATCTTTGAATATCAGCCAAGAAGAAGCAAAGGAAAGAAAAGTATATAGTTACACTAA 251
Query 249 AGCCTTCAACGCTTTTGCTGCCAAGCTTTCTCCACATGAAGCTAAGAAGATGATGGAGAT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AGCCTTCAACGCTTTTGCTGCCAAGCTTTCTCCACATGAAGCTAAGAAGATGATGGAGAT 311
Query 309 GGAAGAAGTTGTTGGTGTATCCCGAAATCAATATCGCAAACTTCACACAACAAAATCATG 368
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 312 GGAAGAAGTTGTTAGTGTATCCCGAAATCAATATCGCAAACTTCACACGACAAAATCTTG 371
Query 369 GGACTTCGTTGGACTTCCTCTGACAGCAAAAAGACATCTAAAAGCAGAGAGAGATGTTAT 428
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GGATTTTGTTGGACTTCCTTTGACAGCAAAAAGACATCTAAAAGCAGAGAGAGATGTTAT 431
Query 429 TATTGGTGTTCTTGATACAGGAATAACGCCAGAGTCAGAGAGTTTCC-ATGACCATGGTC 487
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 432 TATTGGTGTTCTTGATACAGGAATAACGCCAGACTCAGAGAGTTTCCTA-GACCATGGTC 490
Query 488 TAGGCCCTCCTCCGGCTAAATGGAAAGGATCTTGTGGACCTTACAAAAATTTCACCGGAT 547
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 491 TAGGACCTCCTCCGGCTAAATGGAAAGGATCTTGTGGACCTTATAAAAATTTCACCGGAT 550
Query 548 GCAACAACAAAATAATCGGCGCCAAGTACTTCAAGCACGACGGCTATGTGCCTACCGGCG 607
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 551 GCAACAACAAAATAATCGGCGCCAAGTACTTCAAGCACGACGGCAATGTGCCTGCCGGCG 610
Query 608 AAATCCGATCACCGATCGATATCGACGGCCATGGGACGCACACGTCATCTACCGTAGCCG 667
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 611 AAGTCCGATCACCGATCGATATCGACGGACATGGGACGCACACGTCATCCACCGTAGCCG 670
Query 668 GCGTTTTAGTCGCTAACGCGAGTCTCTATGGCATAGCAAACGGTACCGCCCGCGGCGCGG 727
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 671 GCGTTTTAGTCGCAAACGCGAGTCTCTATGGCATAGCAAACGGCACCGCCCGCGGCGCGG 730
Query 728 TTCCGTCGGCGAGGTTGGCGATGTACAAGGTTTGTTGGGCGAGATCCGGCTGTGCCGATA 787
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 731 TTCCGTCGGCGAGGTTAGCGATGTACAAGGTTTGTTGGGCGAGATCCGGCTGTGCTGACA 790
Query 788 TGGACATCCTCGCCGGATTCGAAGCAGCGATTCACGACGGCGTTGACATTATATCCATCT 847
||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 791 TGGACATACTCGCCGGATTCGAAGCAGCGATTCACGACGGCGTAGAAATTATCTCCATCT 850
Query 848 CTATCGGCGGTCCAATCGCCGATTACTCTTCCGATTCGATATCCGTCGGGTCGTTTCACG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CTATCGGCGGTCCAATCGCCGATTACTCTTCCGATTCGATATCCGTCGGGTCGTTTCACG 910
Query 908 CGATGAGGAAAGGGATCCTCACGGTGGCGTCCGCCGGGAACGACGGACCGAGCTCAGGCA 967
||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct 911 CGATGAGGAAAGGAATCCTCACGGTGGCGTCCGCCGGTAACGACGGGCCTAGCTCAGGAA 970
Query 968 CTGTAACGAACCATGAGCCTTGGATATTGACGGTTGCGGCAAGCGGAATCGATCGGACGT 1027
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 971 CTGTAACGAACCATGAGCCGTGGATATTGACGGTTGCTGCAAGTGGAATCGATCGGACGT 1030
Query 1028 TCAAGAGCAAGATAGATCTCGGCAACGGCAAATCCTTCTCTGGGATGGGAATAAGCATGT 1087
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TCAAGAGCAAAATAGATCTCGGCAACGGCAAATCCTTCTCTGGGATGGGAATAAGCATGT 1090
Query 1088 TTAACCCCAAAGCCAAATCGTATCCGCTTGTAAGCGGCGTTGATGCTGCTAAGACCACAG 1147
||| || |||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 1091 TTAGTCCAAAAGCCAAATCGTATCCGCTTGTAAGTGGTGTTGATGCTGCTAAGAACACAG 1150
Query 1148 ACGATAAGTACTTGGCTAGGTACTGTTTCTCTGATTCTTTGGACCGAAAGAAGGTCAAGG 1207
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1151 ACGATAAGTACTTGGCTAGGTATTGTTTCTCTGATTCTTTGGATCGAAAGAAGGTGAAGG 1210
Query 1208 GAAAGGTAATGGTGTGTAGAATGGGGGGAGGTGGTGTGGAGTCGACTATTAAAAGCTATG 1267
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1211 GAAAGGTAATGGTGTGTAGAATGGGAGGAGGTGGTGTGGAGTCTACTATCAAAAGCTATG 1270
Query 1268 GAGGTGCTGGTGCGATCATTGTAAGTGATCAATATCTTGACAACGCTCAGATTTTCATGG 1327
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1271 GAGGTGCTGGTGCCATCATTGTAAGTGATCAATATCTTGACAATGCTCAGATTTTCATGG 1330
Query 1328 CACCTGCCACCAGTGTTAATAGCTCCGTTGGAGATATCATCTACCGATATATCAACTCCA 1387
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1331 CACCTGCCACCAGTGTTAATAGCTCCGTTGGCGATATTATCTACCGATATATCAACTCCA 1390
Query 1388 CAAGATC-GCCATCGGCTGTGATTCAGAAAAC-CAGGCAAGTGACAATCCCTGCTCCATT 1445
||||||| || |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1391 CAAGATCAGCG-TCGGCTGTGATTCAGAAAACTC-GGCAAGTGACAATCCCTGCTCCATT 1448
Query 1446 TGTTGCTTCTTTTTCGTCAAGAGGTCCCAATCCGGGATCAACACGCCTTCTCAAGCCTGA 1505
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1449 TGTTGCTTCTTTTTCATCAAGAGGTCCCAATCCGGGATCAATACGTCTTCTCAAGCCTGA 1508
Query 1506 TATCGCTGCACCCGGGATTGATATATTGGCCGCCTTCACTCTAAAGAGATCACTGACTGG 1565
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1509 TATCGCTGCACCCGGGATTGATATATTGGCGGCCTTCACTCTAAAGAGATCACTGACTGG 1568
Query 1566 GTTAGATGGTGACACCCAATTCTCAAAATTCACCATCCTGTCTGGTACCTCAATGGCATG 1625
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1569 GTTAGATGGTGACACCCAGTTCTCAAAATTCACCATCCTGTCTGGCACCTCAATGGCCTG 1628
Query 1626 CCCTCATGTTGCTGGTGTAGCTGCGTACGTCAAGTCTTTCCATCCAGATTGGACACCCT- 1684
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1629 CCCTCATGTTGCTGGTGTAGCTGCGTACGTCAAGTCTTTTCATCCGGATTGGAC-CCCTG 1687
Query 1685 CTGCCATCAAATCCGCCATCATTACCTCAGCAAAACCGATAAGCCGGAGAGTGAACAAGG 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CTGCCATCAAATCCGCCATCATTACCTCAGCAAAACCGATAAGCCGGAGAGTGAACAAGG 1747
Query 1745 ACGCAGAGTTCGCTTATGGGGGAGGCCAAATAAACCCACGACGAGCCGCAAGCCCTGGCT 1804
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 ACGCAGAGTTTGCTTATGGAGGAGGCCAAATAAACCCACGACGAGCCGCAAGCCCTGGCT 1807
Query 1805 TAGTCTACGACATGGACGACATCTCCTATGTTCAGTTCTTGTGTGGCGAAGGCTACAACG 1864
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1808 TAGTCTACGACATGGACGACATCTCCTATGTTCAGTTCTTGTGCGGCGAAGGCTACAACG 1867
Query 1865 CAACCACTCTGGCTCCATTGGTGGGGT-CACGCTCCGTGAGCTGCTCCTCCATTGTCCCT 1923
|||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1868 CAACCACTCTAGCTCCATTGGTGGG-TACACGCTCCGTGAGCTGTTCCTCCATTGTCCCT 1926
Query 1924 GGACTCGGCCACGATTCCCTCAACTACCCAACAATCCAACTCACGTTGAGATCTGCCAAA 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1927 GGACTCGGCCACGATTCCCTCAACTACCCAACAATCCAACTCACGTTGAGATCCGCCAAA 1986
Query 1984 ACGTCCACATTGGCCGTGTTCAGGCGGAGAGTCACCAACGTGGGAGCACCGTCGTCGGTC 2043
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1987 ACGTCCACATTGGCTGTGTTCAGGCGGAGAGTCACCAACGTGGGACCACCGTCGTCGGTC 2046
Query 2044 TACAACGTCACCGTCAGGGCACCGAAAGGAGTTGAAATCACGGTGGAGCCACGGAGTCTG 2103
|||| || ||||||| | |||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 2047 TACACCGCCACCGTCCGAGCACCGAAAGGAGTAGAAATCACGGTGGAGCCACAGAGTTTG 2106
Query 2104 TCGTTTTCAAAGGCTTCACAGAAGAGGAGCTTCAAAGTGGTGGTGAAGGCCAAACAAATG 2163
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2107 TCATTTTCAAAGGCTTCACAAAAGAGAAGCTTCAAAGTGGTGGTGAAGGCCAAACAAATG 2166
Query 2164 ATTCCTGGGAAGATTGTGTCAGGCTTGCTCGTGTGGAAGAGCCCACGTCACTCTGTTCGG 2223
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2167 ACTCCTGGGAAGATTGTGTCCGGCTTGCTCGTGTGGAAGAGCCCACGTCACTCTGTTCGT 2226
Query 2224 AGCCCCATTGTTATCTACAGTCCTACTTCTGATT-AAATTAATCACATCCTC-ATA-CAA 2280
|||||||||||||| || ||||||||||| |||| |||||||||||||| || | | |||
Sbjct 2227 AGCCCCATTGTTATTTATAGTCCTACTTCGGATTGAAATTAATCACATC-TCCAAAACAA 2285
Query 2281 ACATTTTACTTCAATGTAATCATCTCACTT 2310
|||||||||||||||||||| ||||||||
Sbjct 2286 -CATTTTACTTCAATGTAATCCTCTCACTT 2314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116766467670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5