BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490546
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00220.1 | Symbols: LBD30, JLO | Lateral organ boundaries (L... 1502 0.0
> AT4G00220.1 | Symbols: LBD30, JLO | Lateral organ boundaries
(LOB) domain family protein | chr4:90036-92237 FORWARD LENGTH=948
Length=948
Score = 1502 bits (813), Expect = 0.0
Identities = 906/949 (95%), Gaps = 13/949 (1%)
Strand=Plus/Plus
Query 1 AAAAGCATCATAGTCTCGATGAGTTAAATCCATGTATCTCAAAACCCTAATCACCAATTA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAGCATCATAATCTCGATGAGTTAAATCCATGTATCTCAAAACCCTAATCACCACTTA 60
Query 61 GCTAGTAAAAGAAAAGGAAAAT--AAAGGTAGTTGTGAGGTA-AATAAGGAAGATGAGCA 117
||||||||||| |||||||||| ||||| | ||||| |||| || ||||||||||||||
Sbjct 61 GCTAGTAAAAGGAAAGGAAAATAAAAAGG-ACTTGTGTGGTAGAA-AAGGAAGATGAGCA 118
Query 118 GTAGCGGAAACCCT---AGCAGCAGCGGT---GGAGGAGGCCCTTGCGGCGCGTGCAAGT 171
|||||||||||||| |||||||||||| |||||||| || ||||||||||||||||
Sbjct 119 GTAGCGGAAACCCTAGCAGCAGCAGCGGTGGAGGAGGAGGACCGTGCGGCGCGTGCAAGT 178
Query 172 TCTTGAGAAGGAAGTGTGTCGCTGGCTGCATCTTCGCGCCTTACTTTGACTCCGAGCAAG 231
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 TCTTGAGAAGGAAGTGTGTCGCTGGCTGCATCTTCGCTCCTTACTTTGACTCCGAGCAAG 238
Query 232 GAGCGGCGCACTTCGCGGCGGTTCACAAGGTGTTCGGAGCGAGCAACGTCTCCAAACTCC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGCGGCGCACTTCGCGGCGGTTCACAAGGTGTTCGGAGCGAGCAACGTCTCCAAACTCC 298
Query 292 TCCAACATGTTCCCGAGCATAAACGACCAGACGCCGTCGTTTCAATCTGCTTTGAGGCTC 351
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCCACCATGTTCCCGAGCATAAACGACCAGACGCCGTCGTTTCAATCTGCTTTGAGGCTC 358
Query 352 AGGCTCGTCTCAGAGACCCTATTTACGGCTGCGTCTCTCACATCGTCTCTCTTCAGCAAC 411
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGCTCGTCTCAGAGACCCTATCTACGGCTGCGTCTCTCACATCGTCTCTCTTCAGCAAC 418
Query 412 AGGTGGTAAGTTTGCAAACTGAGCTTTCATATCTACAAGCACACTTAGCAACTCTAGAGC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGTGGTAAGTTTGCAAACTGAGCTTTCATATCTACAAGCACACTTAGCAACTCTAGAGC 478
Query 472 TGCCACAACCTCAACCACCACAGGTTCCGGTGTCGTCTTCTGGATCTCTGCAGGCTCTCT 531
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
Sbjct 479 TGCCACAACCTCAACCACCACAGGTTCCGGTGTCATCTTCAGGATCTCTACAGGCTCTTT 538
Query 532 CCATAACGGACCTCCCATCAATATCGCCGTCGGTGTACGACCTCTCCTCCATCTTCGAGC 591
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CCATAACGGACCTCCCAACAATATCACCGTCGGTGTACGACCTCTCCTCCATCTTCGAGC 598
Query 592 CGGTCATGTCCTCCACGTGGGCCATGCAGCAACAACCACGACCGTCTGATCATCTCTTCG 651
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGGTCATGTCCTCCACTTGGGCCATGCAGCAACAACCACGACCGTCTGATCATCTCTTCG 658
Query 652 GCGTCCCGTCATCGTCTAATATCGGCGGAGGCGGTGAGCTCCAAGCACTGGCGCGTGAGT 711
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GCGTCCCGTCATCGTCCAATATGGGCGGAGGCGGTGAGCTCCAAGCACTGGCGCGTGAGT 718
Query 712 TTATTCACGGTGGGCAAATGCCAGCTCAGCCATCCCCGGGAACCAGTGGTTCTGGCTCAA 771
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 719 TTATTCACGGTGGGCAAATGCCAGCTCAGCCATCGCCGGGAACCAGTGGTTCTGCCTCGT 778
Query 772 CAGTGATAAAACGAGAATGAAGTTATTTCTATAAAATGTTTGTTTATTTGGACCGTAAGA 831
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 779 CAGTGATAAAACGAGAATGAAGTTATTTTTATCGTATGTTTGTTTATTTGGACCGTAAGA 838
Query 832 GATCTATAGTTAGCGATATGTTTCTCCTTGTAATATATATATACTTGGTCGAATTCGTAT 891
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 GATCTATAGTTAGCCATATGTTTCTCCTTGTAATATATATA--CTTGGTCGAATTCGTAT 896
Query 892 TTAAATTGTTGGCTAGAATGTTAATATAAGAACTATATGATTTACATTG 940
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 TTAAATTGTTGTCTAGAATGTTAATATAAGAACTATATGATTTACATTG 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5