BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490550
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription fact... 1435 0.0
AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcri... 195 1e-48
> AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor
YABBY family protein | chr4:72552-75384 REVERSE LENGTH=1270
Length=1270
Score = 1435 bits (777), Expect = 0.0
Identities = 964/1046 (92%), Gaps = 45/1046 (4%)
Strand=Plus/Plus
Query 1 AGTGTCTCTTCATATTTACATAAATACAAAtctctctctctctctctctctctctctaaa 60
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct 1 AGTGTCTCTTCATATTTACATAAAT--AGA----TATCTCTCTCTCTCTCTCTCTCTAAA 54
Query 61 ccacatcttcctctccaccgttctttctcttccctctctctctctctGGACTTCAACTTC 120
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 55 CCACATCTTCCTCTCCACCGTTCTTTCTCTT--C-CT-TCTCTCTCTGGACTTCAACTTC 110
Query 121 TGGAGAAGTACAAGACATTTATAAAGCACTGCTCATCACCCAACACT-AACACAATTGTC 179
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 111 TGGAGAAGTACAAGACATTTATAAAGTACTGCTCATCACCCAACACTAAACACAATTGTC 170
Query 180 AAAA-GGTGTGGTGGAAGGAGAATCTA-TTACT-TCT-ATC-TGGAT-A-TC-GATC-AG 230
|||| |||||||||||||||||||||| || || ||| | | | ||| | || |||
Sbjct 171 AAAAGGGTGTGGTGGAAGGAGAATCTACTT-CTATCTGAACATCGATCAGTCATATCTTT 229
Query 231 TCAATCAAATCAAA-CCCT-C-CTCTCTCTTACTCCtttttttttGTTTaaaaaagaaaa 287
|||||||||||||| |||| | |||||||||||||| |||||||||| || | |
Sbjct 230 TCAATCAAATCAAAGCCCTCCTCTCTCTCTTACTCC---TTTTTTGTTT---TAA-ATCA 282
Query 288 agaaaaaGAGTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGAAAAAGACTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 342
Query 348 GGACCACTTCTCATCTTCGGAGCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 407
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 343 GGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 402
Query 408 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACCGTGACGGTGAGATGCGGCCA 467
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 403 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCA 462
Query 468 CTGTTCGAACCTTTTGTCGGTGACTGTAAGCATGAGAGCTCTTcttcttccctccgtttc 527
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 463 CTGTTCGAACCTTTTGTCGGTGACCGTGAGCATGAGAGCTCTTCTTCTTCCATCCGTTTC 522
Query 528 caaccttggccattcctttttacctccccctcctcctccttctcctcccAATCTTTTGGA 587
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 523 CAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGA 582
Query 588 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGGTGC 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 583 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTC 642
Query 648 AGCTCACCACCCGAACGAATC-TTTGGTTATGCCGACTCGCAACGGTAG---AGTGGATC 703
||||||||||||||||| | | |||||||||| ||||||||||||| || ||||||||
Sbjct 643 AGCTCACCACCCGAACG-AGCATTTGGTTATGGCGACTCGCAACGGAAGATCAGTGGATC 701
Query 704 ATGTGCAAGAGATGCCTCGG---CCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 760
|| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 702 ATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 761
Query 761 TACCATCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGTATAAAGGCAGGCAACC 820
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 762 TACCATCTGCATACAACCGATTCATCAAAGAGGAGATCCAACGTATAAAGGCAGGCAACC 821
Query 821 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 881
Query 881 ACATACACTTTGGTCTCATGGCTGATCATCCTCCCACCAAGAAGGCTAACGTGCGCCAAC 940
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 882 ACATACACTTTGGACTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAAC 941
Query 941 AGGAAGGAGAGGATTCGATGATGGGAAGAGATCGAGAAGGCTTTTACGGCTCAACTGCCA 1000
|||||||||||||| ||||||||||||||| || || |||||||| ||| ||||||
Sbjct 942 AGGAAGGAGAGGATGGGATGATGGGAAGAGA---AG--GG-TTTTACGGTTCAGCTGCCA 995
Query 1001 ACGTTGGGGTGACCCATAACTAGCTA 1026
||||||||||| ||||||||||||||
Sbjct 996 ACGTTGGGGTGGCCCATAACTAGCTA 1021
> AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcription
factor YABBY family protein | chr2:18628265-18630712
REVERSE LENGTH=1035
Length=1035
Score = 195 bits (105), Expect = 1e-48
Identities = 182/219 (83%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 739 CCC-CCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAGGAGGAGAT 797
||| |||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 568 CCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTCATCAAGGAGGAGAT 627
Query 798 CCAACGTAT-AAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTG 856
||||||||| |||| | || || |||||||| ||||||||||||||||| ||||||||||
Sbjct 628 CCAACGTATCAAAG-CTGGTAATCCTGATATAAGCCACAGAGAAGCCTTTAGTGCTGCTG 686
Query 857 CCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGTCTCATGGCTGATCA-TCCTCCC 915
|||| || ||||| || ||||| ||||||||||| || ||| || | || || || |||
Sbjct 687 CCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCTCGTGCCAGA-CAATCAACCC 745
Query 916 ACCAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGAT 954
||||| | ||| ||| ||||||||| |||||||||
Sbjct 746 GTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGAT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5