BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490556
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-lo... 990 0.0
> AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr4:41665-43197
REVERSE LENGTH=1533
Length=1533
Score = 990 bits (536), Expect = 0.0
Identities = 578/598 (97%), Gaps = 3/598 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATGGTAAGTATAAAAAGAAAGGACTGTGCGACTCTTGTGTCTTGTCCAAAAGC 60
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1 ATGGAAAATGGTATGTATAAAAAGAAAGGAGTGTGCGACTCTTGTGTCTCGTCCAAAAGC 60
Query 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCATCAACTCCTCATG 120
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCACCATCTCCTCATG 120
Query 121 GATTGGAACAAAGCTAATGATCTTATCACACAAGAACACGCAGCTTTTCTCCATGATCCT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 121 GATTGGAACAAAGCTAATGATCTTCTCACACAAGAACACGCAGCTTTTCTCAATGATCCT 180
Query 181 ---CATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGAAGAAGACGAAGAG 237
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CACCATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGACGAAGACGAAGAG 240
Query 238 TACGATGAAGACATGGATGCTATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGATGAAGACATGGATGCGATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 300
Query 298 GTAGACATCGACCCTGCCACCGTCCCTAAGCCGAACCGCCGTAACGTAAAGATAAGCGAC 357
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 301 GTAGACATCGACCCTGCCACGGTCCCTAAGCCGAACCGCCGTAACGTAAGGATAAGCGAC 360
Query 358 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 420
Query 418 CTCAAGAGGATCGTGCCTGGCGGTGCAAAGATGGACACAGCTTCGATGCTAGACGAAGCC 477
|||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||
Sbjct 421 CTCAAGAGGATCGTGCCTGGTGGTGCGAAGATGGACACAGCTTCCATGCTCGACGAAGCC 480
Query 478 ATCCGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATACGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 540
Query 538 GGAGCTCCTATGGCTGACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGCTCCTATGGCTAACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 598
Score = 178 bits (96), Expect = 1e-43
Identities = 241/303 (80%), Gaps = 42/303 (14%)
Strand=Plus/Plus
Query 697 TATTGATTG-T-ATTAGGGTTTGATCAGTT-TGTATGCAAGCTTTGGCCTGCAAATTAAT 753
||||||||| | ||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 836 TATTGATTGTTAATTAGGGTTTGATCA-TTCTGTATGAAAGCTTTGGCCTGCAAATTAAT 894
Query 754 TTCCGATGA-AGA-ATATATATAT------CA-A-AT--AGTACTTGTTT-A----ACTA 796
|| |||| | | | |||||||||| | | || | ||||| ||| | ||||
Sbjct 895 TTTCGAT-ATATATATATATATATGGAGAATATATATCAAATACTTTTTTAATTTGACTA 953
Query 797 TAATTTGAATCAATTATATATCTGAATCTGATGAGTGTAGGTTATAGATATATAGGGATT 856
||||||| ||| | || ||||||||||||||||||||||| | | |||||| |||||
Sbjct 954 TAATTTGTATC-A--AT-TATCTGAATCTGATGAGTGTAGG-T-T--ATATAT--GGATT 1003
Query 857 AGCAAAAAACAATTGAAACAACGATTATTATGC-CCTTATATTAAAAATCATCCACCCCA 915
||||||||| | ||||||| ||||||| || || || ||||||||||||||| |||
Sbjct 1004 AGCAAAAAA-GA---AAACAACCATTATTACGCACC-TACATTAAAAATCATCCA--CCA 1056
Query 916 TCG-AG-AACAAGACTCAAGAGGGTTTCCATATTGGAGAATAATGAAACATTTGagaaaa 973
| || ||| | |||||||||||| ||||||||||||||||||||| |||| |||| |
Sbjct 1057 AAGAAGAAACCATCCTCAAGAGGGTTCCCATATTGGAGAATAATGAAAAATTTAAGAAGA 1116
Query 974 aaa 976
|||
Sbjct 1117 AAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5