BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490556 Length=1140 Score E Sequences producing significant alignments: (Bits) Value AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-lo... 990 0.0 > AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:41665-43197 REVERSE LENGTH=1533 Length=1533 Score = 990 bits (536), Expect = 0.0 Identities = 578/598 (97%), Gaps = 3/598 (1%) Strand=Plus/Plus Query 1 ATGGAAAATGGTAAGTATAAAAAGAAAGGACTGTGCGACTCTTGTGTCTTGTCCAAAAGC 60 ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1 ATGGAAAATGGTATGTATAAAAAGAAAGGAGTGTGCGACTCTTGTGTCTCGTCCAAAAGC 60 Query 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCATCAACTCCTCATG 120 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCACCATCTCCTCATG 120 Query 121 GATTGGAACAAAGCTAATGATCTTATCACACAAGAACACGCAGCTTTTCTCCATGATCCT 180 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 121 GATTGGAACAAAGCTAATGATCTTCTCACACAAGAACACGCAGCTTTTCTCAATGATCCT 180 Query 181 ---CATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGAAGAAGACGAAGAG 237 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 CACCATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGACGAAGACGAAGAG 240 Query 238 TACGATGAAGACATGGATGCTATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGATGAAGACATGGATGCGATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 300 Query 298 GTAGACATCGACCCTGCCACCGTCCCTAAGCCGAACCGCCGTAACGTAAAGATAAGCGAC 357 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 301 GTAGACATCGACCCTGCCACGGTCCCTAAGCCGAACCGCCGTAACGTAAGGATAAGCGAC 360 Query 358 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 420 Query 418 CTCAAGAGGATCGTGCCTGGCGGTGCAAAGATGGACACAGCTTCGATGCTAGACGAAGCC 477 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| Sbjct 421 CTCAAGAGGATCGTGCCTGGTGGTGCGAAGATGGACACAGCTTCCATGCTCGACGAAGCC 480 Query 478 ATCCGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 537 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATACGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 540 Query 538 GGAGCTCCTATGGCTGACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 595 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGAGCTCCTATGGCTAACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 598 Score = 178 bits (96), Expect = 1e-43 Identities = 241/303 (80%), Gaps = 42/303 (14%) Strand=Plus/Plus Query 697 TATTGATTG-T-ATTAGGGTTTGATCAGTT-TGTATGCAAGCTTTGGCCTGCAAATTAAT 753 ||||||||| | ||||||||||||||| || |||||| |||||||||||||||||||||| Sbjct 836 TATTGATTGTTAATTAGGGTTTGATCA-TTCTGTATGAAAGCTTTGGCCTGCAAATTAAT 894 Query 754 TTCCGATGA-AGA-ATATATATAT------CA-A-AT--AGTACTTGTTT-A----ACTA 796 || |||| | | | |||||||||| | | || | ||||| ||| | |||| Sbjct 895 TTTCGAT-ATATATATATATATATGGAGAATATATATCAAATACTTTTTTAATTTGACTA 953 Query 797 TAATTTGAATCAATTATATATCTGAATCTGATGAGTGTAGGTTATAGATATATAGGGATT 856 ||||||| ||| | || ||||||||||||||||||||||| | | |||||| ||||| Sbjct 954 TAATTTGTATC-A--AT-TATCTGAATCTGATGAGTGTAGG-T-T--ATATAT--GGATT 1003 Query 857 AGCAAAAAACAATTGAAACAACGATTATTATGC-CCTTATATTAAAAATCATCCACCCCA 915 ||||||||| | ||||||| ||||||| || || || ||||||||||||||| ||| Sbjct 1004 AGCAAAAAA-GA---AAACAACCATTATTACGCACC-TACATTAAAAATCATCCA--CCA 1056 Query 916 TCG-AG-AACAAGACTCAAGAGGGTTTCCATATTGGAGAATAATGAAACATTTGagaaaa 973 | || ||| | |||||||||||| ||||||||||||||||||||| |||| |||| | Sbjct 1057 AAGAAGAAACCATCCTCAAGAGGGTTCCCATATTGGAGAATAATGAAAAATTTAAGAAGA 1116 Query 974 aaa 976 ||| Sbjct 1117 AAA 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55923407130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5