BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490559
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00100.1 | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosoma... 1003 0.0
> AT4G00100.1 | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal
protein S13A | chr4:37084-38312 FORWARD LENGTH=733
Length=733
Score = 1003 bits (543), Expect = 0.0
Identities = 608/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 1 TCTTCAGCAGTCAGTGAGCATCCATAGGAG-AAAGTGTGAGAATCTGCCACCATGGGTCG 59
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 37 TCTTCAGCAGTCAGTGCGCATCCGTAGGAGAAAAGTGTGAGAATCTGCCACCATGGGTCG 96
Query 60 TATGCACAGTAGAGGAAAGGGTATTTCAGCTTCTGCGTTGCCTTACAAGAGACCGTCTCC 119
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 97 TATGCACAGTCGAGGAAAGGGTATTTCAGCCTCTGCGTTGCCTTACAAGAGATCGTCTCC 156
Query 120 GAGCTGGCTCAAGACCACCTCTCAGGATGTTGATGAATCAATCTGCAAATTTGCCAAAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAGCTGGCTCAAGACCACCTCTCAGGATGTTGATGAATCAATCTGCAAATTTGCCAAAAA 216
Query 180 GGGATTGACCCCTTCCCAGATTGGTGTGATTCTCCGTGACTCTCACGGTATCCCTCAGGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GGGATTGACCCCTTCCCAGATTGGTGTGATTCTCCGTGACTCTCACGGTATCCCTCAGGT 276
Query 240 CAAGAGTGTTACAGGAAGCAAGATCCTGAGGATACTCAAAGCCCATGGCCTTGCTCCTGA 299
|||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 277 CAAGAGTGTTACTGGAAGCAAGATCTTGAGGATACTCAAAGCTCATGGCCTTGCTCCTGA 336
Query 300 GATCCCTGAGGATCTGTACCATCTTATTAAGAAGGCTGTTGCCATCCGTAAACATCTCGA 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 337 GATCCCTGAGGATCTGTACCATCTAATTAAGAAGGCTGTTGCCATCCGTAAACATCTCGA 396
Query 360 GAGGAACAGGAAGGACAAGGATTCCAAGTTCAGGCTCATCTTGGTTGAGAGCAGGATTCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GAGGAACAGGAAGGACAAGGATTCCAAGTTCAGGCTCATCTTGGTTGAGAGCAGGATTCA 456
Query 420 TCGCCTCGCTCGCTATTACAAGAAGACCAAGAAGCTCCCTCCCGTCTGGAAGTACGAATC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CCGCCTCGCTCGCTATTACAAGAAGACCAAGAAGCTCCCTCCCGTCTGGAAGTACGAATC 516
Query 480 CACTACCGCGAGCACCCTTGTGGCTTAAGCTGGAGTTGGTGGAGGAAGATTCTACTAGTC 539
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 517 CACTACCGCGAGCACCCTTGTGGCTTAAGCTGGAGTC--TGGAGGAGGATTCTACTAGTC 574
Query 540 TGTTGCTTCCTTTTTGTTTTCATGAAATCTGAATTTTAGTCTTCATGTGTCACCAGGATT 599
|||||||||| ||||||||| ||||| ||| || ||||||||| |||||||| |||||||
Sbjct 575 TGTTGCTTCCCTTTTGTTTTGATGAATTCTCAACTTTAGTCTTAATGTGTCAGCAGGATT 634
Query 600 TGATGTGTTTGCCTCTCCCTTCTTTAAGAGAATCGTATG 638
| |||||||||||||| || ||| | ||||| ||||
Sbjct 635 TT-TGTGTTTGCCTCTCTTTTTTTTCCG-GAATCTTATG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5