BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490561
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00080.1 | Symbols: UNE11 | Plant invertase/pectin methylest... 1129 0.0
> AT4G00080.1 | Symbols: UNE11 | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:32893-33718 FORWARD
LENGTH=826
Length=826
Score = 1129 bits (611), Expect = 0.0
Identities = 736/793 (93%), Gaps = 22/793 (3%)
Strand=Plus/Plus
Query 1 CTCTCAGTTAATTCCCTAATTTTCCATGGCGGCTAACAACAAATTGACCCTCGTATTACT 60
|||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||
Sbjct 29 CTCTCAGTTAATTCTCTAATTCGCCATGGCGGCTAACAACAAATTGTTCTTTGTATTACT 88
Query 61 CTCCCTGCTCCCTCTCATCATCTTCTCGGCAACAGCCACGTCATCAAAAGACTACGACAC 120
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 89 CTCCCTGTTCCCTCTCATCATCTTCTCGGCAACCGCCACGTCATCAAAAGACTACGACAC 148
Query 121 GAAGGCTTACGTGCACTCATGGTGCCGGACAACCTTATACCCGAAACTGTGCGTCCGGTC 180
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 149 GAAGGCTTACGTGCACTCATGGTGCCGAACAACCTTATACCCGAAACTATGCGTCCGGTC 208
Query 181 GATGTCTCGTTACGTGCGTTCACGGGCGGTGCAAAATCCACGGGATCTGGCCCGATTCGC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 209 GATGTCTCGTTACGTGCGTTCACGCGCGGTGCAAAATCCACGGGATCTGGCCCGATTTGC 268
Query 241 GCTCAAAGCCAGCCTATACAGAGCCAAGTACACAAAGGCGTTCTTGTTAAAAGAGGTAAA 300
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 269 GCTCAAAGCCAGCCTATATAGAGCTAAGTACACAAAGGCGTTCTTGTTAAAAGAGGTTAA 328
Query 301 GAACCTCGAGACGACGCTGAGGCCCCAATACTACGCGTTGGTTCACGACTGCTTGAACCA 360
|||| | ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 329 GAACTTGGAGACGACGTTGAGGCCCCAATACTACGCGTCGGTTCACGACTGCTTGGACCA 388
Query 361 AATAAGAGACAGCGTGAACCAGCTGAGCCTAGCCATAGCGGAGCTAGACAGAGTCAGCAG 420
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 389 AATAAGAGACAGCGTGAACCAGTTGAGTCTAGCCATAGCGGAGCTAGACAGAGTCAGCAG 448
Query 421 GAGGCAGGGAAAGAGCCAAGGGGATCTACACTGGCATATAAACAACCTGCAGACGTGGAC 480
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 449 GAGACAGGGAAAGAGCCAAGGGGATCTACACTGGCATATAAATAACCTGCAGACGTGGAC 508
Query 481 AAGCACAGCTCTCACAGACGCCGAGACTTGCGTGAGTCAGTTCCCGGGACGGAGGATGAG 540
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 509 AAGCACAGCTCTTACAGACGCCGAGACTTGCGTGAGCCAGTTCCCGGGACGTAGGATGAG 568
Query 541 CAAACTTAAGGCTACGATTAAAGGGAAAGTGAAGAATGTGGAGGAAACAACTAGTAATGC 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 569 CAAACTTAAGGCTACGATTAAAGGAAAAGTGAAGAATGTGGAGGAAACAACTAGTAATGC 628
Query 601 CCTTGCCTTCATCGAGCACTACGCTGCTGCTAGGTACCGAGCCAGACGTCCTTGAGTTGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 629 CCTTGCCTTCATCGAGCACTACGCTGCTGCTAGGTACCGAGCCAGACGTCCTTAAGCTGA 688
Query 661 GCCT-TGTGTGTGTTTTGATCATCTTG--T-------CTT---A-------A-ATTT-TG 698
|||| |||||||||||||||||| ||| | ||| | | |||| ||
Sbjct 689 GCCTGTGTGTGTGTTTTGATCATTTTGCCTTAAATTTCTTCTTACTTCTTGATATTTGTG 748
Query 699 TGTGTAATTGTTAACCAGTTGTGTAAATCCAAAAGTTCATATATGACAGTAAATTGTTAT 758
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct 749 TGTGTAATTGTTAACCAGTCGTGTAAATCCAAAAGTTCATATATGACCGTAAATTGATAT 808
Query 759 AATTCAATAACAA 771
|||||||||||||
Sbjct 809 AATTCAATAACAA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5