BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490563
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00040.1 | Symbols: | Chalcone and stilbene synthase family... 2043 0.0
AT1G02050.1 | Symbols: LAP6 | Chalcone and stilbene synthase fa... 863 0.0
> AT4G00040.1 | Symbols: | Chalcone and stilbene synthase family
protein | chr4:14627-16079 FORWARD LENGTH=1366
Length=1366
Score = 2043 bits (1106), Expect = 0.0
Identities = 1247/1316 (95%), Gaps = 5/1316 (0%)
Strand=Plus/Plus
Query 1 TTCACTGTGACCTTAAAAAGATGTTGGCGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 60
|||| ||||| || | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 7 TTCATTGTGAACTCACAAAGATGTTGGTGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 66
Query 61 CATATCAGGGGAAAGCAACACTGCTTGCTCTCGGTAAGGCCTTCCCCAGCAATGTTGTTT 120
| ||||||||||| || ||| |||||||||||||||||||||| || |||||||||||||
Sbjct 67 CTTATCAGGGGAAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAGCAATGTTGTTT 126
Query 121 CCCAGGAGAATCTCGTGGAGGATTATCTCCGTGAAATCAAATGTGATGACCTTTCTATCA 180
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 127 CCCAGGAGAATCTCGTGGAGGAGTATCTCCGTGAAATCAAATGCGATAACCTTTCTATCA 186
Query 181 AAGACAAGCTGCAACACTTGTGTAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 187 AAGACAAGCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 246
Query 241 CTCGTGAGACGCTGCAAAAATACCCTGAACTAGCAATCGAGGGTTCCCCAACCATCAAAC 300
| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 247 CACGGGAGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAAC 306
Query 301 AGAGGCTTGAGATTGCAAACGAAGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 AGAGGCTTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 366
Query 361 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTAGTCTATGTTTCCTCCA 420
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 367 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTTGTCTACGTTTCCTCCA 426
Query 421 GTGAGTTCCGTTTGCCCGGAGGTGACCTCTACCTCTCGACACAGCTGGGCCTTAGCAACG 480
||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 427 GTGAGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACG 486
Query 481 AGGTTCAGAGAGTGATGCTGTATTTTCTGGGATGCTATGGAGGTTTGAGCGGGCTGCGCG 540
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 487 AGGTTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCG 546
Query 541 TGGCTAAAGACATTGCCGAGAACAACCCAGGGAGCCGGGTGCTGCTCACCACCTCCGAGA 600
|||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 547 TGGCCAAAGACATTGCTGAGAACAACCCAGGGAGCCGTGTGTTGCTCACCACCTCTGAGA 606
Query 601 CTACGGTTCTGGGGTTCCGCCCGCCCAACAAAGCTCGCCCTTACGACTTAGTCGGGGCTG 660
|||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 607 CTACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTG 666
Query 661 CACTGTTTGGAGACGGAGCAGCTGCTCTAATCATCGGAGCTGACCCTAGAGAGTCTGAAT 720
|||| |||||||| ||||||||||| || ||||||||||| ||||||| |||||| ||||
Sbjct 667 CACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCGGAAT 726
Query 721 CTCCCTTCATGGAGCTTCACTGTGCTCTGCAGCAGTTCCTTCCCCAAACACAGGGGGTGA 780
|||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786
Query 781 TCGACGGGAGGCTGTCAGAAGAGGGAATAAGCTTCAAGCTAGGAAGAGACCTCCCTCAGA 840
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846
Query 841 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTGGTGGCAAAGGCTGGCTCTGGTT 900
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTAGTGGCAAAGGCTGGCTCTGGTG 906
Query 901 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCGGGTGGACCAGCCATCCTGAGCG 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCCTGAGCG 966
Query 961 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1026
Query 1021 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTAAGAAATG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1027 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTCAGAGATG 1086
Query 1081 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1146
Query 1141 GAATCACTTTCGAAGGCTTTCTCATGAGGAGCCTCTAAATGTCTATGAACCGGACATTTT 1200
|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1147 GAATCACTTTCGAAGGCTTTCTCATGAGGAACCTCTAAATGTATATGAACTGGACATTT- 1205
Query 1201 CTAAACAAATAAAATATTCAGGAACCGATGCCAACACACATACATGATACATGGAATGGT 1260
|| |||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1206 CTCAACAAATAAAATATACAGGAACCGATGCTAACACACATACAT----CATGTAATGGT 1261
Query 1261 TGCATTAGTTTTGTTCTTCAATGGTAAATCATAGAAATGCATCAATACAGTAAGTT 1316
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 1262 TGCATTAGTTTTGTTCTTTAATGGTAAATCACAGAAATACATCAATACAGTAAGTT 1317
> AT1G02050.1 | Symbols: LAP6 | Chalcone and stilbene synthase
family protein | chr1:359117-360518 REVERSE LENGTH=1312
Length=1312
Score = 863 bits (467), Expect = 0.0
Identities = 914/1127 (81%), Gaps = 41/1127 (4%)
Strand=Plus/Plus
Query 70 GGAAA-GCAACACTGCTTGCTCTCGGTAAGGCCTTCCCCAG-CAATGTTGTTTCC-CAGG 126
||||| ||||||||||||||||| || || |||||||| || ||| || | |||| ||||
Sbjct 147 GGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAA-GTCG-TTCCTCAGG 204
Query 127 AGAATCTCGTGG-AGGATTATCTCCGTGAAATCAAATGTGATGAC-CTTTCTATCAAAGA 184
||||||| |||| |||||| ||| || || | ||||||||||||| | || |||||||||
Sbjct 205 AGAATCTAGTGGAAGGATT-TCTACGAGACACCAAATGTGATGACGCGTT-TATCAAAGA 262
Query 185 CAAGCTGCAACACTTGTGTAAAAGC-ACAACTGTCAAGACACGCTACACAGTCATGTCTC 243
|||||| |||||||||| |||| | ||||| || ||||| || ||||| || || | |
Sbjct 263 AAAGCTGGAACACTTGTGCAAAA-CGACAACCGTGAAGACGCGATACACTGTGTTGACGC 321
Query 244 GTGAGACGCT-GCAAAAATACCCTGAACTAGCAATC-GAGGGTTCCCCAACCATCAAACA 301
| |||| || || ||||||||||| ||| ||| | |||||||| ||||| ||||| ||
Sbjct 322 GAGAGATACTGGC-TAAATACCCTGAGCTAACAA-CAGAGGGTTCACCAACAATCAAGCA 379
Query 302 GAGGCTTGAGATTGCAAACGAAGCGGTTGTGCAGATGGCATAT-GAAGCGAGCTT-GGTT 359
|| ||||| ||||||||||| ||||||||| | ||||||| | ||||| || || || |
Sbjct 380 AAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCAT-TGGAAGCCAGTTTAGG-T 437
Query 360 TGCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATC-TAGTCTATGTTTCCTC 418
||||||||||||||||||||| |||||||||| |||||||| | | ||||| ||||||||
Sbjct 438 TGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCA-CATTGTCTACGTTTCCTC 496
Query 419 CAGTGAGTTCCGTTTGCCCGGAGGTGACCTCTACCTCTCGA-CACAGCTGGGCCTTAGCA 477
|| ||| ||||||| ||||| |||||||| |||||||| | || |||| ||||| || |
Sbjct 497 AAGCGAGATCCGTTTACCCGGTGGTGACCTTTACCTCTC-AGCAAAGCTAGGCCTGAGGA 555
Query 478 ACGAGGTTCAGAGAGTGATGCTGTATTTTCTGGGATGCTATGGAGGTTTGAGCGGGC-TG 536
| || || | ||||||||||||||||||||||||||||| |||||| ||| | ||| |
Sbjct 556 ATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGA-CTGGCCTC 614
Query 537 CGCGTGGCTAAAGACATTGCCGAGAACAACCCAGGGAGCCGGGTGCTGCTCACCACCTCC 596
|| ||||| ||||||||||| ||||||||||| || ||||| || |||||||| |||||
Sbjct 615 CGTGTGGCCAAAGACATTGCTGAGAACAACCCCGGAAGCCGTGTTCTGCTCACAACCTCT 674
Query 597 GAGACTACGGTTCTGGGGTTCCGCCCGCCCAACAAAGCTCGCCCTTACGACTTAGTCGGG 656
|| || || |||| || || || || || |||||||| || || |||||| |||| ||
Sbjct 675 GAAACCACCATTCTCGGATTTCGGCCACCAAACAAAGCGCGTCCGTACGACCTAGTTGGA 734
Query 657 GCTGCACTGTTTGGAGACGGAGCAGCTGCTCTAATCATCGGAGCTGACCCTAGAGAGTCT 716
||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||||| |
Sbjct 735 GCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTGATCATCGGAGCTGACCCGAGAGAGTGT 794
Query 717 GAATCTCCCTTCATGGAGCTTCACTGTGCTCTGCAGCAGTTCCTTCCCCAA-ACACAGGG 775
||| |||| ||||||||||| |||| ||| | ||||||||| || || ||||||
Sbjct 795 GAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTC-TTGCCGGGGACACAGAA 853
Query 776 GGTGATCGACGGGAGGCTGTCAGAAGAGGGAATAAGCTTCAAGCTAGGAAGAGACCTCCC 835
|||||||| |||||| || | || || || |||| ||||||||| ||| ||||||||||
Sbjct 854 CGTGATCGAGGGGAGGTTGACTGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCC 913
Query 836 TCAGAAGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTGGTGGCAAAGGCTGGCTC 895
|||||||| || || ||| | || |||||||||||||||||| ||| ||||||||||
Sbjct 914 GCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGGAAAGGCTGGCGA 973
Query 896 TG-GTTCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCGGGTGGACCAGCCATCC 954
|| || || ||||||| |||||| | |||||||| |||||||| || ||||| || || |
Sbjct 974 TGAGT-CGATGGAGTTCAATGACATGTTCTGGGCTGTTCATCCAGGAGGACCTGCGATTC 1032
Query 955 TGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGA-ATGCAGCAGAAGG 1013
||| | | ||||||||||| ||||||||| || || |||||||| | |||||||||||
Sbjct 1033 TGAACCGTCTGGAGACAAAACTGAAGCTGGAGAAAGAGAAGCTGGAGA-GCAGCAGAAGG 1091
Query 1014 GCGTTGATGGATTATGGGAACGTAAGCAGCAACACCAT-CTTCTACATAATGGACAA-AG 1071
|||||| ||||||| |||||||| ||||||||||| || || || | ||||| | |
Sbjct 1092 GCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTG-TATGTGATGGAGTATA- 1149
Query 1072 TAAGAAATGAGCTTGA-GAAGAAAGGC-ACAG-AGGGAGAAGAGTGGGGTCTGGGCTTAG 1128
| ||| ||||||| || ||||||||| || | || | |||||||||| || |||||||
Sbjct 1150 TGAGAGATGAGCT-GAAGAAGAAAGGTGAC-GCAGC-ACAAGAGTGGGGACTTGGCTTAG 1206
Query 1129 CTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCATGAGGAGCCTC 1175
|||||||||| |||||||| ||||||||| ||||||| | ||||||
Sbjct 1207 CTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTC 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5