BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490566
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter 9... 2957 0.0
> AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter
9 | chr1:1801162-1803984 REVERSE LENGTH=1955
Length=1955
Score = 2957 bits (1601), Expect = 0.0
Identities = 1716/1772 (97%), Gaps = 6/1772 (0%)
Strand=Plus/Plus
Query 2 CAATCTTCAACTCTCTAATTCAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 61
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 14 CAATCTTCAACTCTCAAATTGAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 73
Query 62 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCTC 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 74 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCAC 133
Query 122 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCCGGCGACTCTCTTGTTCGTC 181
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 134 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCTGGCGACTCTCTGGTTCGTC 193
Query 182 GCCTCGGCCTTTTCGACCTCGTACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 241
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 194 GCCTCGGCCTTTTCGACCTCATACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 253
Query 242 TCGTCGTTACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACGATCAGCTTCTTGC 301
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 254 TCGTCGTCACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACAATCAGCTTCTTGC 313
Query 302 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTGCATCTCGTTTCC 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 314 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTTCATCTCGTTTCC 373
Query 362 CTGCTGTTGTTGGTGGAGCTTACATGTACTCGTATTCAGCTTTCAATGAGATCACAGCTT 421
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 374 CTGCTGTTGTTGGTGGAGCTTACATGTACTCTTACTCAGCTTTCAATGAGATCACAGCTT 433
Query 422 TTCTTGTTTTCGTACAACTCATGCTTGATTATCATATTGGCGCCGCTAGTATCTCCCGTA 481
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 434 TTCTTGTTTTCGTTCAACTCATGCTTGACTATCATATTGGCGCCGCTAGTATCTCCCGTA 493
Query 482 GCTTGGCAAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 541
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GCTTGGCCAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 553
Query 542 CTCTCTGGATGGGAAGCGGCGAAGAGCTGC-TAGGAGGGCTTCTCTCTTTAAATATCTTG 600
|||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||| |||
Sbjct 554 CTCTCTGGATGGGAAGCGGCAAAGAGCT-CTTGGGAGGGCTTCTCTCTTTGAATATTTTG 612
Query 601 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 672
Query 661 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATTGTTCTCGTTGTGATTTGTGCT 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 673 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATCGTTCTCGTTGTGATTTGTGCC 732
Query 721 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 792
Query 781 GTTCTGACTGGAGCTACTGTAGTCtttttttCATATGTTGGATTTGATGCGGTTGCTAAT 840
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 793 GTTCTCACTGGAGCTACTGTTGTCTTCTTTTCATATGTTGGATTTGATGCAGTTGCTAAT 852
Query 841 TCTGCTGAAGAATCAAAGAACCCTCAGCGTGATCTGCCAATCGGAATTATGGGAAGCCTT 900
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 853 TCTGCTGAAGAATCGAAGAACCCTCAGCGCGATTTGCCAATCGGAATTATGGGGAGCCTT 912
Query 901 CTGGTTTGTATCTCGCTCTATATTGGCGTATGTTTAGTGCTCACCGGGATGGTCCCTTTT 960
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 913 CTGGTTTGTATCTCGCTGTATATTGGCGTATGTTTGGTGCTCACCGGGATGGTCCCTTTT 972
Query 961 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1032
Query 1021 GTCTCAGTCTTAATCAGTATCGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1080
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GTCTCAATCTTAATCAGTATTGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1092
Query 1081 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1152
Query 1141 TTTTCCAGAATACACCCAACTCTCCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1153 TTTTCCAGAATACACCCAACTCTTCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1212
Query 1201 GTAGCTG-CGGTTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCCGT 1259
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1213 GTAGCTGGCG-TTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCTGT 1271
Query 1260 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1331
Query 1320 TAAAAAAGAAAGAGAGTCCG-CCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1378
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TAAAAAAGATAGAGAGTC-GTCCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1390
Query 1379 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCATATTTTACCGTTTCAGTGCTT 1438
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1391 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCGTATTTTACCGTTTCAGTGCTT 1450
Query 1439 CACTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1498
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CAGTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1510
Query 1499 ATCGCCAAGCTTATGCTCAGTCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1558
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1511 ATCGCCAAGCTTATGCTCTGCCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1570
Query 1559 TGCCATGCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1618
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 TGCCATCCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1630
Query 1619 GGATAAGATTTGTTGTAGTCAGTGTGCTTGCAACTGCCGTTTATGCTTTGTATGGGCAGT 1678
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1631 GGATAAGATTTGTTGTTGTCAGTGTGCTTGCAACTGCCGTTTATGCCTTGTATGGGCAGT 1690
Query 1679 ACCACGCAGATACAAGCACGCTGGTTTATCAGAGGGCACCTGAAACTGAAAGCGACTCGT 1738
||||||||||| | |||| | ||| ||||||||||||||||||||||||||||||| | |
Sbjct 1691 ACCACGCAGATCCGAGCATGTTGGATTATCAGAGGGCACCTGAAACTGAAAGCGACGCTT 1750
Query 1739 AGTAATGCTACATTATAGTTGTGTTGCTTAAA 1770
||||||||||||||||||||||||| ||||||
Sbjct 1751 AGTAATGCTACATTATAGTTGTGTTACTTAAA 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5