BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490575
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription ter... 1596 0.0
> AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription termination
factor family protein | chr4:17902266-17904169 FORWARD
LENGTH=1478
Length=1478
Score = 1596 bits (864), Expect = 0.0
Identities = 944/983 (96%), Gaps = 4/983 (0%)
Strand=Plus/Plus
Query 11 TATGGAGGTCACAAATACCAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTTCGATGA 70
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TATGGAGGTGACAAATACGAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTTCGATGA 135
Query 71 TCCGAGTATCGACAAGATGTTGAGAAAATGCAAGCAGTTGGACAAGGCCCAAAGCGATGT 130
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 136 TCCGAGTATCGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAGCGATGT 195
Query 131 GGCATCTGAAAACTGGGACTACCTGAGGAACATTGTCGGTATCCAAGAGAGAAAACTCCC 190
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 196 GGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAAACTCCC 255
Query 191 TTACATCGTCTATCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCC 250
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCC 315
Query 251 CATGGTCGAGTGCCTCTCCAGTCTAGGAAGGAATCCTCGGGAAG-TGTCTTCCGCCATTA 309
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 316 GATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTG-CTTCCGCCATTA 374
Query 310 CCAAGTTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGCCCCCTTCTTGCTT 369
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 375 CCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCTTGCTT 434
Query 370 TCTTTCAAGCGTTGGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAA 429
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TCTTTCAAGCGTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAA 494
Query 430 GGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTA-CT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 495 GGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTAGC- 553
Query 489 CTTGGCCTTGACCAAGATGGGATGATCGGCAAAGTTCTGGTCAAGAACCCATTTCTTATG 548
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 554 CTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCTTATG 613
Query 549 GGGTATAGTGTTGATAAAAGGTTAAGGCCTACCACTGAGTTCTTGAAATCATCCGTTGGT 608
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 614 GGGTACAGTGTTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCCGTTGGC 673
Query 609 CTGAGTGAGGATGGCATTCAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGAC 668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CTGAGTGAGGATGGCATTAAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGAC 733
Query 669 GTTAACAAGATTCTGAAACCAAATTATGATTATTTGAGGGAGTGTGGCTTTGGAGATTCC 728
|||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 734 GTTAACAAGATTCTCAAACCAAATTATGATTATTTGAAGGAGTGTGGGTTTGGAGATTCC 793
Query 729 CAGATAGCAACCATGGTGACTGGTTATCCCCCAATTTTGATTAAGAGTATTAAGAATTCA 788
||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 794 CAGATAGCAACCATGGTCACTGGTTATCCCCAAATCTTGATTAAGAGTGTTAAGAATTCA 853
Query 789 CTACAACCTAGGATCAGATTCCTAGTCCAGGTGATGGGAAGAGGCTTGGATGAAGTGGCT 848
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 854 CTACAGCCTAGGATCAGATTCCTCGTCCAGGTGATGGGAAGAGGCATGGATGAAGTGGCT 913
Query 849 TCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTAGAATCAAGGTTTAAACTT 908
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 914 TCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTCGAATCGAGGTTTAAACTT 973
Query 909 GTTAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAA 968
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GTCAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAA 1033
Query 969 TTCCATGAGAAGTTTGGCTTTTC 991
|||||||||||||||||||||||
Sbjct 1034 TTCCATGAGAAGTTTGGCTTTTC 1056
Score = 424 bits (229), Expect = 2e-117
Identities = 336/381 (88%), Gaps = 33/381 (9%)
Strand=Plus/Plus
Query 1070 AACAGAATATGCAGCAATGCAGTCTAGCAGCTTGT--TAAGTATAGGAGGGTAAAAAGCA 1127
|||||||||||||||||||||||||||| |||||| |||||| || |||||||||||
Sbjct 1105 AACAGAATATGCAGCAATGCAGTCTAGCTGCTTGTCGGAAGTATGGGTGGGTAAAAAGCC 1164
Query 1128 CCTAGTCATTCCACAAATAT----G--TC-A---AAAAGTCACATTTGATGAC-AAGAGA 1176
|||||||||||||||||||| | | | ||| ||||||||||||||| ||||||
Sbjct 1165 CCTAGTCATTCCACAAATATGGAGGCCCCTAGTCAAAGGTCACATTTGATGACAAAGAGA 1224
Query 1177 TGGTTGATCGTTCTCTGCCTCTAAGTAGTATGTACCTGTCATATAAAAATGAAACCCCCT 1236
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1225 TGGTTGATCGTTCTCTGCCTAT-A-TAGTATGTACCTGTCATATAAAAATGAAACCCCCT 1282
Query 1237 CTGCTCTCT-TT--GGATGAGATCAACCGTATTTTAAACCGGCCAAACTTGAAA-TTTTG 1292
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1283 CTGCTCTCTCTTTTGGATGAGATCAACCGTATTTTAAACCGGCCAAACTTGAAAGTTTTT 1342
Query 1293 TTT-GCTTCAAATGCTCTTTCAAGTAGAGTCCCTTT-GTTATTCACGTTT-GTAACTATT 1349
||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1343 TTTTGCTTCAAATGCTCTTTCAAGTAGAGTCCCTTTTGTTATTCACGTTTTGTAGCTATT 1402
Query 1350 CTATTCTTTCTCTCCTTGGACGGGTGTGTGTAAGGTTTTTGTTATTCGGTTTTTCCGATG 1409
||||||| |||||||||||| || |||| |||| ||| |||||||||||||||
Sbjct 1403 CTATTCT--CTCTCCTTGGAC---TG-GTGT----TTTT-GTTCTTCGGTTTTTCCGATC 1451
Query 1410 AAAGTTGAATCAAGAAGAAGT 1430
|||||||||||||||||||||
Sbjct 1452 AAAGTTGAATCAAGAAGAAGT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70481565180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5