BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490580
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38210.1 | Symbols: ATEXPA20, EXP20, ATEXP20, ATHEXP ALPHA 1... 1751 0.0
AT4G38215.1 | Symbols: | other RNA | chr4:17923332-17924252 FO... 472 4e-132
> AT4G38210.1 | Symbols: ATEXPA20, EXP20, ATEXP20, ATHEXP ALPHA
1.23, EXPA20 | expansin A20 | chr4:17922756-17923973 REVERSE
LENGTH=1142
Length=1142
Score = 1751 bits (948), Expect = 0.0
Identities = 1061/1114 (95%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 1 AAAAAATGTCAGAGCAATCTTTTGTCGCATCCCCACCAGTCTTGAAAAGCGGAGCCTGAT 60
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAACATGTCAGAGCAATCTTTTGTCGCATCCCCACAAGTCTTGAAAAGCGGAGCCTGAT 60
Query 61 GATCCAAAGGAACCCCCAAAACCCTCTCAAACGCGTCACTTTTGTCTGCCAGC--TG--T 116
|||| ||||||||||||||||| ||||||||||| |||||||||||||||| | || |
Sbjct 61 GATCAAAAGGAACCCCCAAAACTCTCTCAAACGCATCACTTTTGTCTGCCACCTGTGACT 120
Query 117 GACTGTGAGGATCCCAACATCATTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 176
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTGTGAGGATCCCAACAACACTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 180
Query 177 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCAGAGGATGACTGGAAGA 236
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 181 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCCGAAGATGACTGGAAGA 240
Query 237 TAGCCACAGCCACGCTTTCTAGAGACAGGGACGGCTCCTCCTCCGTCGCTACTGGAGGCG 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 TAGCCACAGCCACGCTTTCTAGAGACAGAGACGGCTCCTCCTCCGTCGCTACTGGAGGCG 300
Query 297 CTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGGCGGGTACAGCGCAGGCCTGAGCG 356
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 301 CTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGCCGGCTACAGCGCAGGCCTGAGCG 360
Query 357 GGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGCGTGAACC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGCGTGAACC 420
Query 417 ACATCCGGTGGTGCCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGATTTCTGTC 476
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACATCCGTTGGTGTCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGATTTCTGTC 480
Query 477 CTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAGGAGCACT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 CTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAGGAACACT 540
Query 537 TGGAACTATCTCATGCCGCTTTCACAGGGATCGCAGAAACAAGAGCCGAGATGATACCTG 596
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 541 TGGAACTATCTCATGCCGCCTTCACAGGGATCGCAGAAACCAGAGCTGAGATGATACCTA 600
Query 597 TACAGTACAGGAGGGTCAAGTGTGGGCGGAGAGGCGGGTTGAGATTCAGCTTGAGCGGGA 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACAGTATAGGAGGGTCAAGTGTGGGCGGAGAGGCGGGTTGAGATTCAGCTTGAGCGGGA 660
Query 657 GCTCCCACTTCTTCCAGGTGTTGATAAGCAATGTGGGCCTCGACGGGGAAGTGGTTGGAG 716
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 GCTCCCACTTTTTCCAGGTGTTGATAAGCAATGTGGGCCTCGACGGGGAAGTGGTTGGTG 720
Query 717 TGAAAGTGAAGGGCCATACAACGGCTTGGATCCCAATGGCCAGAAACTGGGGACAGAATT 776
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 TGAAAGTGAAGGGCCACACAACGGCTTGGATCCCAATGGCCAGAAACTGGGGACAGAACT 780
Query 777 GGCACTCCTCTCTTGACCTCATTGGACAGTCTCTCTCTTTCGAGGTTTCTCTCAAAGGCG 836
||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 781 GGCACTCCTCTCTCGATCTCATCGGACAGTCTCTCTCTTTCGAGGTTACTCTCAAAGGCG 840
Query 837 GCAAAACCATTGCCTCTTATGATGTGGCTCCTCCATATTGGCGCTTCGGAATGACATACC 896
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 GCAAAACCATTGCCTCTTATGATGTGGCTCCTCCGTATTGGCGCTTCGGAATGACATACC 900
Query 897 AAGGAAAGCAGTTCCACTCCTGACTCCTCCTTTATCGTCTTCAAGTCATGATTCACTTTC 956
|||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||
Sbjct 901 AAGGAAAGCAGTTCCACTCCTGACTCCT--TT-ATCTTCTTCAAATCATGATTCACTTTC 957
Query 957 GGTGGCTTTATTATGACTTTGGAGACATTAGATATCATCACTTCGTTTCAAGG---TATA 1013
|||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 958 GGTGACTTTATTATGACTTTGGAGTCATTAGATATCATCACTTCATTTCAAGGAGGTATA 1017
Query 1014 AATGACTTTCCACGAGTGGCTCATCTT-GTCTTCTCTTTTAGTTTT-CTTTTTATATAAT 1071
||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1018 AATGACTTTCCACGAGTGGCTCATCTTTGTCTTCTCTTTTCTTTTTTCTTTTTATATAAT 1077
Query 1072 CA-ATCCTTCACAATCCTCACTTGGACCTCATTT 1104
| ||||||||||||||| ||||||||| |||||
Sbjct 1078 -ATATCCTTCACAATCCTTACTTGGACCGCATTT 1110
> AT4G38215.1 | Symbols: | other RNA | chr4:17923332-17924252
FORWARD LENGTH=921
Length=921
Score = 472 bits (255), Expect = 4e-132
Identities = 267/273 (98%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 290 GGAGGCGCTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGGCGGGTACAGCGCAGGC 349
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 273 GGAGGCGCTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGCCGGCTACAGCGCAGGC 214
Query 350 CTGAGCGGGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CTGAGCGGGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGC 154
Query 410 GTGAACCACATCCGGTGGTGCCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGAT 469
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 153 GTGAACCACATCCGTTGGTGTCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGAT 94
Query 470 TTCTGTCCTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 TTCTGTCCTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAG 34
Query 530 GAGCACTTGGAACTATCTCATGCCGCTTTCACA 562
|| ||||||||||||||||||||||| ||||||
Sbjct 33 GAACACTTGGAACTATCTCATGCCGCCTTCACA 1
Score = 459 bits (248), Expect = 3e-128
Identities = 280/295 (95%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 1 AAAAAATGTCAGAGCAATCTTTTGTCGCATCCCCACCAGTCTTGAAAAGCGGAGCCTGAT 60
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 642 AAAACATGTCAGAGCAATCTTTTGTCGCATCCCCACAAGTCTTGAAAAGCGGAGCCTGAT 583
Query 61 GATCCAAAGGAACCCCCAAAACCCTCTCAAACGCGTCACTTTTGTCTGCCAGC--TG--T 116
|||| ||||||||||||||||| ||||||||||| |||||||||||||||| | || |
Sbjct 582 GATCAAAAGGAACCCCCAAAACTCTCTCAAACGCATCACTTTTGTCTGCCACCTGTGACT 523
Query 117 GACTGTGAGGATCCCAACATCATTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 176
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 522 GACTGTGAGGATCCCAACAACACTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 463
Query 177 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCAGAGGATGACTGGAAGA 236
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 462 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCCGAAGATGACTGGAAGA 403
Query 237 TAGCCACAGCCACGCTTTCTAGAGACAGGGACGGCTCCTCCTCCGTCGCTACTGG 291
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 402 TAGCCACAGCCACGCTTTCTAGAGACAGAGACGGCTCCTCCTCCGTCGCTACTGG 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5