BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490588
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-gly... 1352 0.0
> AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
| chr4:17931570-17935325 REVERSE LENGTH=1813
Length=1813
Score = 1352 bits (732), Expect = 0.0
Identities = 813/853 (95%), Gaps = 1/853 (0%)
Strand=Plus/Plus
Query 1 GTTTGTCGTCGATATGGCGAGGATGTCTTGTGACTTGAGATTCCTTCTCATCCCGGCCGC 60
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 104 GTTTGTCGTCGATATGGCGAGGATCTCGTGTGACTTGAGATTTCTTCTCATCCCGGCAGC 163
Query 61 TTTCATGTTCATCTACATCCAGATGAGGCTTTTCCAGACGCAATCACAGTATGCAGATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TTTCATGTTCATCTACATCCAGATGAGGCTTTTCCAGACGCAATCACAGTATGCAGATCG 223
Query 121 CCTCGGTTCCGCTATCGAATCTGAGAACCATTGCACTAGTCAAATGCGTGGCCTCATTGA 180
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 224 CCTCAGTTCCGCTATCGAATCTGAGAACCATTGCACTAGTCAAATGCGAGGCCTCATAGA 283
Query 181 TGAAGTTAGCATCAAACAGTCACAGATTGTTGCTCTCCAAGATGTGAAGAACCGCCAGGA 240
||||||||||||||||||||| | ||||||||| ||| ||||| ||||||||||||||||
Sbjct 284 TGAAGTTAGCATCAAACAGTCGCGGATTGTTGCCCTCGAAGATATGAAGAACCGCCAGGA 343
Query 241 CCAAGAACTTGTGCAGCTTAAGGATCTTATCCACACGTTTGaaaaaaaaGGAATTGCAAA 300
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 344 CGAAGAACTTGTGCAGCTTAAGGATCTAATCCAGACGTTTGAAAAAAAAGGAATAGCAAA 403
Query 301 ACTCATTGAAGCTGGACAGATGCCTGTGGCTGCTGTTGTGATTATGGCCTGCAGTCGTGC 360
||||| | ||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 404 ACTCACTCAAGGTGGACAGATGCCTGTGGCTGCTGTAGTGGTTATGGCCTGCAGTCGTGC 463
Query 361 AGACTATCTTGCAAGGACTGTTAAATCAGTTTTAACATATCAAAGTCCCGTTGCTTCAAA 420
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 464 AGACTATCTTGAAAGGACTGTTAAATCAGTTTTAACATATCAAACTCCCGTTGCTTCAAA 523
Query 421 ATATCCTCTATTTATATCTCAGGATGGATCTAATCAAGCCGTCAAGAGCAAGGCATCGAG 480
||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||
Sbjct 524 ATATCCTCTATTTATATCTCAGGATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAG 583
Query 481 CTATAATCAACTAACATATATGCAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCC 540
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 584 CTATAATCAATTAACATATATGCAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCC 643
Query 541 TGGCGAACTGATTGCGTACTACAAGATTGCACGTCACTACAAGTGGGCACTGGACCAGTT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGGCGAACTGACTGCGTACTACAAGATTGCACGTCACTACAAGTGGGCACTGGACCAGTT 703
Query 601 GTTCTACAAACACAAATTTAGCCGAGTGATTATACTAGAAGATGATATGGAAATTGCTCC 660
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 704 GTTTTACAAACACAAATTTAGTCGAGTGATTATACTAGAAGATGATATGGAAATTGCTCC 763
Query 661 AGACTTCTTTGATTACTTTGAGGCTGCAGCTAATCTCATGGATAGGGATAAAACCATTAT 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 764 AGACTTCTTTGATTACTTTGAGGCTGCAGCTAGTCTCATGGATAGGGATAAAACCATTAT 823
Query 721 GGCAGCTTCATCATGGAATGATAATGGGCAGAAGCAGTTTGTACATGATCCCTATGCACT 780
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 824 GGCTGCTTCATCATGGAATGATAATGGACAGAAGCAGTTTGTGCATGATCCCTATGCGCT 883
Query 781 TTACCGATCAGAtttttttCCTGGCCTTGGGTGGATGCTGAAGAGATCGACTTGGGATGA 840
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 884 ATACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGA 943
Query 841 GTTATCACCTAAA 853
||||||||| |||
Sbjct 944 GTTATCACC-AAA 955
Score = 1168 bits (632), Expect = 0.0
Identities = 771/834 (92%), Gaps = 25/834 (3%)
Strand=Plus/Plus
Query 853 ACTAAAGGAAAACCATAAAGACCGCCAATTTATTCGACCTGAAGTCTGCAGAACATACAA 912
|||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||
Sbjct 989 ACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAA 1048
Query 913 TTTTGGTGAACATGGGTCTAGTTTGGGGCAATTTTTCAGTCAGTATCTGGAACCTATAAA 972
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1049 TTTTGGTGAACATGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAA 1108
Query 973 GCTAAACGATGTGAAGGTTGACTGGAAAGCAAAGGACCTGGGGTACCTAACAGAGGGAAA 1032
|||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1109 GCTAAACGATGTGACGGTTGACTGGAAAGCAAAGGACCTGGGATACCTGACAGAGGGAAA 1168
Query 1033 CTATACCAAGTACTTTTCTGGCTTAGTGAGACAAGCACGACCAATTCAAGGTTCTGACCT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CTATACCAAGTACTTTTCTGGCTTAGTGAGACAAGCACGACCAATTCAAGGTTCTGACCT 1228
Query 1093 CGTCTTAAAGGCTCAAAACATAAAGGGTGATGTTCGTATCCAGTATAAAGACCAAGCAGA 1152
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1229 TGTCTTAAAGGCTCAAAACATAAAGGATGATGTTCGTATCCGGTATAAAGACCAAGTAGA 1288
Query 1153 GTTTGAACGCATTGCAGGGGAATTTGGTATATTTGAAGAATGGAAGGATGGTGTGCCTCG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GTTTGAACGCATTGCAGGGGAATTTGGTATATTTGAAGAATGGAAGGATGGTGTGCCTCG 1348
Query 1213 AACAGCATATAAAGGAGTAGTGGTGTTTCGAATCCAGACAACAAGACGTGTATTCCTGGT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AACAGCATATAAAGGAGTAGTGGTGTTTCGAATCCAGACAACAAGACGTGTATTCCTGGT 1408
Query 1273 TGGGCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACATATGAAAG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TGGGCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACATATGAAAG 1468
Query 1333 CAAAAGAATATTTTCGAGCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTATTA 1392
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1469 GAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTGTTA 1528
Query 1393 TTTACGGATGAGTTTGTAGAGGGGTGGGGTTAACTTTAACAGAAAGGAAGCTCTGGTGAC 1452
|||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1529 TTTATGGATGAGTTTGTCGAGCGGTGGGGTTAACTTTAACAGCAAGGAAGCTCTGGTGAC 1588
Query 1453 CTGTCTCATTGGCTTAGATGTTATGGGAACCCCT-G---G----A-----AA-TATATTT 1498
||| || ||||||||||| ||||||||||||||| | | | || |||||||
Sbjct 1589 CTGGCTGATTGGCTTAGAAGTTATGGGAACCCCTTGAAAGGGTCAGGGTTAAATATATTT 1648
Query 1499 CAGTCGTTTTAAAACTGATTGTCTTGTGGGTATCATCTTATACGAAAGCAAATCATTCTA 1558
|||| |||||| | ||||| ||||||||||| | |||||||||| |||||||||||||
Sbjct 1649 CAGTTGTTTTATTAGTGATTATCTTGTGGGTA--A-CTTATACGAATGCAAATCATTCTA 1705
Query 1559 TGCAGTTTTTCATCTTCCCACTTCTTATGGCTTCTTTATTGCTAGTGTATATATCTCTTC 1618
||||||||||| || |||||||| || |||||||| ||||||||||||| ||||||||||
Sbjct 1706 TGCAGTTTTTCTTCGTCCCACTTGTTTTGGCTTCTCTATTGCTAGTGTACATATCTCTTC 1765
Query 1619 AAACATGTGCATATGTACTAAATAATGCGTGTTGCTTCAAAGAAGTAATTTTTA 1672
|||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 1766 AAACATGT--A------CTAAATAATGCGTGTTGCTTCAAAGAAGTAACTTTTA 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5