BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490589
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38250.1 | Symbols: | Transmembrane amino acid transporter ... 2446 0.0
AT4G38260.1 | Symbols: | Protein of unknown function (DUF833) ... 159 6e-38
> AT4G38250.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr4:17935402-17937068 FORWARD LENGTH=1667
Length=1667
Score = 2446 bits (1324), Expect = 0.0
Identities = 1458/1523 (96%), Gaps = 7/1523 (0%)
Strand=Plus/Plus
Query 76 GTCGAAATTCATCAGATGGGTTTTGAGAACGAACCTAGCTCCTCCTCCTCCTCTTATACC 135
||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 117 GTCGAAAATCATCAGATGGGTTTTCAGAACGAAGCTAG------CTCCTCCTCTTATACC 170
Query 136 CTTAAAATACCCCCACCGGCCAGAGAGGACACGCCTCTCCTCGGCAAGGGACCTCCCCTC 195
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 171 CTTAAAATACCTCCACCGGCCAGAGAGGACTCGCCTCTTCTCGGCAAGGGACCTCCCCTC 230
Query 196 TCCAGCCAGTTCAAGACCTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTT 255
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCCAGCCAGTTTAAGACCTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTT 290
Query 256 GGTCTTCCTTACGCCTTCAAGCGTACCGGATGGCTCATGGGTGTCCTCCTCCTCGTCTCC 315
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 GGTCTTCCTTACGCCTTCAAGCGAACCGGATGGCTCATGGGTGTCCTCCTCCTCGTCTCC 350
Query 316 GTCTCTGTTTTGACCCATCACTGCATGATGCTTCTTGTCCATACCCGCCGCAAGCTCGAC 375
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 351 GTCTCTGTTTTGACCCATCACTGTATGATGCTTCTTGTCTATACCCGCCGCAAGCTCGAC 410
Query 376 TCTTTCAATGCTGGCCTCTCCAAGATCGGCTCTTTCGGGGACCTTGGATTCGCCGTCTGC 435
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 411 TCTTTCAATGCTGGCATCTCCAAGATCGGCTCTTTTGGTGACCTTGGATTCGCCGTCTGC 470
Query 436 GGCTCCTTCGGGAGGATCGTCGTTGACTTATTTATTATTCTCTCTCAAGCTGGTTTTTGT 495
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 471 GGCTCCTTGGGGAGGATCGTCGTTGACTTATTTATCATTCTGTCTCAAGCTGGTTTTTGT 530
Query 496 GTCGGATATCTTATCTTCATCGGCACTACTTTAGCTAATCTATTCGATCCTGATTCGCCC 555
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 531 GTCGGATATCTTATCTTCATCGGCACTACTTTAGCTAATCTATCCGATCCTGAATCGCCC 590
Query 556 ACCAGTCTCAGGCATCAGTTTACAAGGCTGGGTTCTGAATTCCTGGGCGTGTCTTCTAAG 615
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACCAGTCTGAGGCATCAGTTTACAAGGCTGGGTTCTGAATTCCTGGGCGTGTCTTCTAAG 650
Query 616 AGTCTCTACATTTGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATTAAGACCCTC 675
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 651 AGTCTCTACATATGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATCAAGACGCTC 710
Query 676 ACTCACTTGGCTCCTCTCAGCATCTTCGCCGACGTTGTTGATCTTGCCGCTATGGCTGTC 735
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 711 ACTCACTTGGCTCCTCTCAGCATCTTCGCCGATATTGTTGATCTTGGCGCTATGGCTGTG 770
Query 736 GTCATTGTAGAGGATTCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGT 795
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTCATTGTTGAGGATTCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGT 830
Query 796 GGTATGTCCCTCTTCTTGTATGGTATGGGCGTGGCTGTCTATTCCTTCGAAGGCGTTGGA 855
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 831 GGTATGTCCCTCTTCTTGTATGGTATGGGCGTCGCTGTCTATTCCTTCGAAGGCGTTGGA 890
Query 856 ATGGTCTTGCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCA 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATGGTCTTGCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCT 950
Query 916 CTCGGCATGGGATTCATCTCTCTCATATACATCGCATTTGGTTTCCTAGGTTACTTGGCT 975
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 951 CTCGGCATGGGATTCATCTCTCTCATATACATCGCATTTGGTATCTTAGGTTACTTGGCT 1010
Query 976 TTTGGTGAGGACACCATGGACATAATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACT 1035
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1011 TTTGGTGAGGACACCATGGACATTATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACT 1070
Query 1036 GTTGTTCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCA 1095
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTTGTCCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCA 1130
Query 1096 GTGTTTGAGATAGTGGAGAGGCGTTTCTCCCGCGGGATGTACTCTGCCTGGCTCAGATGG 1155
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1131 GTGTTTGAGATAGTGGAGAGGCGTTTCTCACGCGGGATGTACTCTGCGTGGCTCAGATGG 1190
Query 1156 CTACTCGTCTTGGCAGTGACTCTGGTGGCTCTCTTTGTGCCAAACTTTACAGATTTTTTG 1215
|||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1191 GTACTCGTCTTAGCAGTGACTCTGGTGGCTCTTTTTGTGCCAAACTTTGCAGATTTTTTG 1250
Query 1216 TCATTGGTTGGCAGCAGCACTTGCTGTGTGTTAGGGTTTGTGTTACCTGCATTGTTTCAT 1275
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1251 TCATTGGTTGGCAGCAGCACTTGCTGTGTGTTAGGCTTTGTGTTACCTGCATTGTTTCAT 1310
Query 1276 TTATTGGTGTTCAAGGAAGAGATGGGGTGGATGCAATGGAGTTCAGACACAGCGATTGTG 1335
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1311 TTATTGGTGTTCAAGGAAGAGATGGGGTGGCTGCAATGGAGTTCAGACACAGCGATTGTG 1370
Query 1336 GTATTGGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTCTCG 1395
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTACTAGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTCTCT 1430
Query 1396 GTCAAAGTGTGAGCGTCCGGGAAGTGAGAGATTGGAGAGGTTTTTCTCTACTTGTGTGCA 1455
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1431 GTCAAAGTGTGAGCGTCCGTGAAGTCAGAGATTGGAGAGGTTTTTCTCTCCTTGTGTGCA 1490
Query 1456 ATTATGTATATGGGATTTGTTGTGGTGTTAAGAGTAATTGTGATTGTATTTGTATTTTGA 1515
||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1491 ATTATGTATATGGAATTGGTTGTGGTTTTAAGAGTAACTGTGATTGTATTTGTATTTTGA 1550
Query 1516 TGGTT-GGAATAAAAGAGATCAGCTCTGTCTTCTGTTTTGTGATTACATACACAATATAT 1574
||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 1551 TGGTTTGGAATAAAAGAGATCAGCTCTGTCTTCTGTTTTGTGTTTACATGTACAACATAT 1610
Query 1575 GGGAGAGTTTTGGGTTCTCAATG 1597
| |||||||||| |||||||||
Sbjct 1611 GTGAGAGTTTTGATTTCTCAATG 1633
> AT4G38260.1 | Symbols: | Protein of unknown function (DUF833)
| chr4:17936921-17938728 REVERSE LENGTH=1502
Length=1502
Score = 159 bits (86), Expect = 6e-38
Identities = 105/114 (92%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1485 AAGAGTAATTGTGATTGTATTTGTATTTTGATGG-TTGGAATAAAAGAGATCAGCTCTGT 1543
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1502 AAGAGTAACTGTGATTGTATTTGTATTTTGATGGTTTGGAATAAAAGAGATCAGCTCTGT 1443
Query 1544 CTTCTGTTTTGTGATTACATACACAATATATGGGAGAGTTTTGGGTTCTCAATG 1597
||||||||||||| |||||| |||| ||||| |||||||||| |||||||||
Sbjct 1442 CTTCTGTTTTGTGTTTACATGTACAACATATGTGAGAGTTTTGATTTCTCAATG 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78865056195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5