BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490593

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38280.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   520    1e-146
  AT2G45250.2 | Symbols:  | Integral membrane protein hemolysin-I...   357    1e-97 
  AT4G38330.1 | Symbols:  | Integral membrane protein hemolysin-I...   134    2e-30 


> AT4G38280.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); 
Has 65 Blast hits to 65 proteins in 13 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants 
- 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr4:17941796-17943363 FORWARD LENGTH=990
Length=990

 Score =  520 bits (281),  Expect = 1e-146
 Identities = 378/421 (90%), Gaps = 21/421 (5%)
 Strand=Plus/Plus

Query  185  TGGAGTCTCC-GGC-C-ACTAATGCTGCTAGCGGTCGACTTGTTTATGTGCGCAGGAGAG  241
            |||| ||||| | | | ||||||||||| |||||||||||||||||||| || || ||||
Sbjct  170  TGGAATCTCCAGCCACTACTAATGCTGCAAGCGGTCGACTTGTTTATGTCCGGAGAAGAG  229

Query  242  TGGAGGTTGACACATCCAAAGCAGCTGCGAG--C-ACTAACCCGAACCCG----C--CTA  292
            |||||||||||||||||||||||||||| ||  | ||||| |||||||||    |  |||
Sbjct  230  TGGAGGTTGACACATCCAAAGCAGCTGCTAGCACTACTAATCCGAACCCGCCTCCTACTA  289

Query  293  AGGTTCC-C-TC----ACAGGCA-CA--GGCACAGGAACCAACTACTACCAGCCATAAGT  343
            |||  || | ||    ||   || ||   ||||||||||||||  |||||||||||||||
Sbjct  290  AGGCACCACTTCAAATACCTTCATCACCCGCACAGGAACCAACCCCTACCAGCCATAAGT  349

Query  344  TAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAATAAGCTTAATCAATCTG  403
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  350  TAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAACAAGCTTAATCAATCTG  409

Query  404  ATCGGACAGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATG  463
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  ATCGGACCGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATG  469

Query  464  CTGTTGACTTGGAAAAGAGGTCTATTCAATTCTCTCTCGAGGAAGCGAGAGAGATGCAGC  523
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  470  CTGTTGACTTGGAAAAGAGGTCTATTCAGTTCTCTCTCGAGGAAGCGAGAGAGATGCAGC  529

Query  524  GTGTAGCAGCTTTAAACGTGTTAGGAAGGTCTGTCAATAGTCTAAAATCTACATCAAATG  583
            | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct  530  GCGTAGCAGCTTTAAACATGTTAGGAAGGTCTGTGAATAGTCTAAAATCTACATCAAATG  589

Query  584  A  584
            |
Sbjct  590  A  590


> AT2G45250.2 | Symbols:  | Integral membrane protein hemolysin-III 
homolog | chr2:18661464-18663029 FORWARD LENGTH=896
Length=896

 Score =  357 bits (193),  Expect = 1e-97
 Identities = 205/211 (97%), Gaps = 0/211 (0%)
 Strand=Plus/Plus

Query  298  CCCTCACAGGCACAGGCACAGGAACCAACTACTACCAGCCATAAGTTAGACTGGGAAGAG  357
            ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  325  CCCGCACAGGCACAGGCACAGGAACCAACCCCTACCAGCCATAAGTTAGACTGGGAAGAG  384

Query  358  CGTTACCTTCATCTTCAAATGCTTCTTAATAAGCTTAATCAATCTGATCGGACAGATCAT  417
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  385  CGTTACCTTCATCTTCAAATGCTTCTTAACAAGCTTAATCAATCTGATCGGACCGATCAT  444

Query  418  GTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATGCTGTTGACTTGGAA  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATGCTGTTGACTTGGAA  504

Query  478  AAGAGGTCTATTCAATTCTCTCTCGAGGAAG  508
            |||||||||||||| ||||||||||||||||
Sbjct  505  AAGAGGTCTATTCAGTTCTCTCTCGAGGAAG  535


 Score =  122 bits (66),  Expect = 4e-27
 Identities = 99/114 (87%), Gaps = 6/114 (5%)
 Strand=Plus/Plus

Query  184  GTGGAGTCTCC-GGC-C-ACTAATGCTGCTAGCGGTCGACTTGTTTATGTGCGCAGGAGA  240
            ||||| ||||| | | | |||||||||||||||||||||||||||||||| || || |||
Sbjct  178  GTGGACTCTCCAGCCACTACTAATGCTGCTAGCGGTCGACTTGTTTATGTCCGGAGAAGA  237

Query  241  GTGGAGGTTGACACATCCAAAGCAGCTGCGAGCACTA--AC-CCGAACCCGCCT  291
            ||||||||||||||||||||||| ||||| |||||||  |  ||||| ||||||
Sbjct  238  GTGGAGGTTGACACATCCAAAGCCGCTGCTAGCACTACTAATCCGAATCCGCCT  291


> AT4G38330.1 | Symbols:  | Integral membrane protein hemolysin-III 
homolog | chr4:17951470-17952763 FORWARD LENGTH=636
Length=636

 Score =  134 bits (72),  Expect = 2e-30
 Identities = 76/78 (97%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  507  AGCGAGAGAGATGCAGCGTGTAGCAGCTTTAAACGTGTTAGGAAGGTCTGTCAATAGTCT  566
            |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  182  AGCGAGAGAGATGCAGCGCGTAGCAGCTTTAAACGTGTTAGGAAGGTCTGTGAATAGTCT  241

Query  567  AAAATCTACATCAAATGA  584
            ||||||||||||||||||
Sbjct  242  AAAATCTACATCAAATGA  259



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41945512745


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5