BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490595
Length=3195
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38350.2 | Symbols: | Patched family protein | chr4:1795817... 1572 0.0
> AT4G38350.2 | Symbols: | Patched family protein | chr4:17958177-17966962
REVERSE LENGTH=4157
Length=4157
Score = 1572 bits (851), Expect = 0.0
Identities = 886/903 (98%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 1454 AGGCTACTGCGTTTGTTGTAACATATCCAGTTAACAACGTCATTGGTGATTCAAGCAACG 1513
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1807 AGGCTACTGCGTTTGTTGTAACATATCCAGTCAACAACGTCATTGGTGATTCAAGCAACG 1866
Query 1514 AAAACGCAAGGGCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGC 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 AAAACGCAAGGGCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGC 1926
Query 1574 TACCTATGGTGCGATCCAAGAATTTGAGTCTGTCATTTTCATCCGAAAGCTCAATAGAGG 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 TACCTATGGTGCGATCCAAGAATTTGAGTCTGTCATTTTCATCCGAAAGCTCAATAGAGG 1986
Query 1634 AAGAGCTGAAAAGAGAAAGCACTGCTGATGTTATAACAATAGCTGCAAGCTATTTGGTTA 1693
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 AAGAGCTGAAAAGAGAAAGTACTGCTGATGTTATAACAATAGCTGCAAGCTATTTGGTTA 2046
Query 1694 TGTTTGTTTACATTTCGGTCACACTTGGAGATGCGCCGCAGTTCTCTACTTTTTACATTT 1753
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 2047 TGTTTGTTTACATTTCGGTCACACTTGGAGATGCTCCGCAGTTCTATACCTTTTACATTT 2106
Query 1754 CATCAAAGGTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGAT 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CATCAAAGGTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGAT 2166
Query 1814 CTGTTGGAGTTTTCAGTGCTCTTGGAGTTAAATCCACATTGATCATAATGGAAGTCATTC 1873
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 CTGTTGGAGTTTTCAGTGCCCTTGGAGTTAAATCCACATTGATCATAATGGAAGTCATTC 2226
Query 1874 CTTTCCTAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGA 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 CTTTCCTAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGA 2286
Query 1934 GACAACCTCGTGATGTTTCTTTAGAGCAAAGAATTAGCTCTGCACTTGTTGAAGTAGGTC 1993
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2287 GACAACCTCGTGAGGTTTCTTTAGAGCAACGAATTAGCTCTGCACTTGTTGAAGTAGGTC 2346
Query 1994 CATCCATAACATTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTC 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 CATCCATAACATTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTC 2406
Query 2054 CAATGCCAGCATGTCGTATTTTCTCCATGTTTGCAGCTTTGGCTATTATGCTGGACTTCT 2113
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2407 CAATGCCAGCATGTCGTATCTTCTCCATGTTTGCAGCATTGGCTATTATGCTGGACTTCT 2466
Query 2114 TTCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAGATCTGCGGATA 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467 TTCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAGATCTGCGGATA 2526
Query 2174 ACAGGATTGATTGTTTCCCTTGCATAAAAGTTCCTTCATCATCTCAAGAATCTGTTGAAG 2233
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2527 ATAGGATTGATTGTTTCCCTTGCATAAAAGTTCCTTCATCATCTCGAGAATCTGTTGAAG 2586
Query 2234 GTGGAAGAGGA-CCTGGGTTTCTTGAGAGATACATGAAGGAGGTTCATGCACCCGTTCTT 2292
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2587 GTGGAAG-GGAACCTGGGTTTCTTGAGAGATACATGAAGGAGGTTCATGCACCCGTTCTT 2645
Query 2293 GGACTTTGGGTTGTAAAAATGGTTGTTGTCGCTGTATTCTTGGCTTTTGCGCTGGCAAGC 2352
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2646 GGACTTTGGGGTGTAAAAATGGTTGTTGTCGCTGTATTCTTCGCTTTTGCACTGGCAAGC 2705
Query 2353 ATT 2355
|||
Sbjct 2706 ATT 2708
Score = 1461 bits (791), Expect = 0.0
Identities = 859/892 (96%), Gaps = 4/892 (0%)
Strand=Plus/Plus
Query 577 GCTTGCTCAAGTCCCGAACCCCTGCCGCCCCATGAGGAAGATTCTTGCTCAATTAGAATC 636
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 GCTTGCTCAAGTCCCGAACCCCTGCCGCCCCATGATGAAGATTCTTGCTCAATTAGAATC 917
Query 637 GGTCATCTTAAGGTTAGATGCATTGAGTTATCAATGGTACTTGTATACATCTTGTTGGTG 696
|||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 918 GGTCCTCTTAAGGTTAGATGCATTGAGTTATCAATGGCACTTGTATACGTCTTGCTGGTG 977
Query 697 TCTTGCTTCTTCGGATGGGCTGCTTTAAATCGAAGAA-AAGATATAACACAGCCTGGTGA 755
|||||||||||||||||||||| |||||||||||||| || ||| ||||||||| |||
Sbjct 978 TCTTGCTTCTTCGGATGGGCTGGTTTAAATCGAAGAAGAA-ATACGACACAGCCTCTTGA 1036
Query 756 TAGCTCAGAGCCACTATTGCATCCTGTGGAAGAAGATGGAATTAATAGTGAAACGAAGGA 815
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1037 TAGCTCAAAGCCACTATTGCATCCTGTGGAAGAAGATGGAATTAATAGTGAAATGAAGGA 1096
Query 816 AAACATACTTGGTGTCAAGGTGCAAAGACATGCTCAACTTTCTCCTGTTCAGAGATATAT 875
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 AAACATACTTGGTGTCAAGGTGCAAAGACATGCTCAACTCTCTCCTGTTCAGAGATATAT 1156
Query 876 GGCAAAATTTTACAGATCATATGGGTCATGGATTGCTAGAAATCCATCTCTTATTCTCTT 935
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1157 GGCAAAATTTTACAGATCATATGGGTCATGGATTGCTAGAAATCCATCTCTTGTTCTCTT 1216
Query 936 CATGTCGGTGGCTATTGTTCTTGCACTCAGTTCAGGTCTCTATAATTTCAAGGTGGAAAC 995
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1217 CATGTCAGTAGCTATTGTTCTTGCACTCTGTTCAGGTCTCTATAATTTCAAGGTGGAAAC 1276
Query 996 ACGACCAGAAAAGTTGTGGGTAGGTCCTGAAAGCAAAGCAGCAGAAGAGAAAAAGTTCTT 1055
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1277 ACGACCAGAAAAGTTGTGGGTTGGTCCTGAAAGCAAAGCAGCAGAAGAGAAAAAGTTCTT 1336
Query 1056 TGATACCCACCTTTCGCCGTTCTACAGAATTGAGCAGCTTATCTTGGCCACTGTTCCTGA 1115
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1337 TGATACCCACCTTTCGCCATTCTACAGAATCGAGCAGCTTATCTTGGCCACTGTTCCTGA 1396
Query 1116 TCCCAAAAGTGGCAGGGCGCCTAGTATTGTAACAGATGAAAATATTCTTTTGCTTTTTGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TCCCAAAAGTGGCAGGGCGCCTAGTATTGTAACAGATGAAAATATTCTTTTGCTTTTTGA 1456
Query 1176 CATACAACAAAAGGTTGATCAAATTCGCGGAAATTATTCAGGTTCAGAGGTCTCTCTGCC 1235
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1457 CATACAACAGAAGGTTGATCAAATTCGTGGAAATTATTCAGGTTCAGAGGTCTCTTTGCC 1516
Query 1236 CGACATATGTTTGAAGCCTTTGGGAGAGGATTGCGCCACTCAGAGTATTCTGCAGTATTT 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 CGACATATGTTTGAAGCCTTTGGGAGAGGATTGCGCCACTCAGAGTATTCTGCAGTATTT 1576
Query 1296 CAAGATGGACTCTGGAACTTTTGATGATTATGGAGGAGTTGAGCATGCTGAGTACTGTTT 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 CAAGATGGACTCTGGAACTTTTGATGATTATGGAGGAGTTGAGCATGCTGAGTACTGTTT 1636
Query 1356 CCAGCATTACACTTCAGCAGAGATGTGTTTGAGTGCTTTTCAGGCGCCTGTTGATCCTAG 1415
|||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1637 CCAGCATTACACTTCATCAGAGACGTGTTTGAGCGCTTTTCAGGCGCCTGTTGATCCTAG 1696
Query 1416 TGCAGTGTTGGGAGGATTCTCGGGGAATAACTATTCAGAGGCTACTGCGTTT 1467
|||||||||||||||||||||||||||||| || ||||||| || || ||||
Sbjct 1697 TGCAGTGTTGGGAGGATTCTCGGGGAATAATTACTCAGAGG-TAATG-GTTT 1746
Score = 944 bits (511), Expect = 0.0
Identities = 556/578 (96%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 1 ATGTATGACATTTGTGGACACCGCACCGATGGAAAAGTCCTCAACTGTCCTTATGCTTCC 60
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 234 ATGTATGACATTTGCGGACACCGCAGCGATGGAAAAGTCCTTAACTGTCCTTATGCCTCC 293
Query 61 CCTTCCATTAAGCCTGATGACCTGTTTTCTGCCAAAATCCAAAGCCTTTGCCCAACCATA 120
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCTTCCATTCAGCCTGATGAACTGTTTTCTGCCAAAATCCAAAGCCTTTGCCCAACCATA 353
Query 121 ACTGGCAAAGTCTGTTGTACCGAGACTCAATTTGACACTTTGAGGTCTCAAGTTCAACAG 180
| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 354 AGTGGCAATGTCTGTTGTACAGAGACTCAGTTTGACACTTTGAGGTCTCAAGTTCAACAG 413
Query 181 GCTGTCCCTTTTCTTGTCGGTTGTCCTGCATGCTTACGAAACTTCTTAAACTTGTTCTGC 240
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 414 GCTGTCCCTTTTCTTGTGGGTTGTCCTGCATGCTTACGGAACTTCTTAAATTTGTTCTGC 473
Query 241 GAGCTCTCCTGTTCTCCAAATCAGTCTCTTTTCATCAACGTCACTTCTGTTGCTGAGGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAGCTCTCCTGTTCTCCAAATCAGTCTCTTTTCATCAACGTCACTTCTGTTGCTGAGGTG 533
Query 301 AGTGGAAATTTGACAGTGGATGGTATAGACTATCACATAACTGATACTTTTGGAGAAGGC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 AGTGGAAATTTGACAGTGGATGGTATAGACTATCACATAACTGATACGTTTGGAGAAGGC 593
Query 361 CTTTACGAGTCCTGTAAAGAGGTGAAATTTGGAACAATGAACACACGTGCCATTAACTTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 CTTTACGAGTCCTGTAAAGAGGTGAAATTTGGAACAATGAACACACGTGCAATTAACTTT 653
Query 421 GTTGGCGGTGGTGCTCAAAACTTCAGAGAATGGTTTACGTTTATTGGTCAGAAAGCACCA 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGGCGGTGGTGCTAAAAACTTCAGAGAATGGTTTACGTTTATTGGTCAGAAAGCACCA 713
Query 481 CCTGGCTTTCCTGGTTCACCGTATGCGATAAACTTCAAATCAAGCACCCCTGAGTCATCT 540
||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 714 TCTGGCTTTCCTGGTTCACCATATGCGATCAACTTCAAATCAAGCATCCCTGAGTCATCT 773
Query 541 GCGATGGTACCAATGAACT-TATCTGTTTATTCATGTG 577
||||||||||||||||| | ||||||||||||||||||
Sbjct 774 GCGATGGTACCAATGAA-TGTATCTGTTTATTCATGTG 810
Score = 671 bits (363), Expect = 0.0
Identities = 380/388 (98%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 2809 GGCATCCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGGATTGCTGTA 2868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3624 GGCATCCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGGATTGCTGTA 3683
Query 2869 GAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGAACAGAGAACAGAGA 2928
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 3684 GAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGGACAGAGAACATAGA 3743
Query 2929 GCGACAGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCACAAAA 2988
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3744 GCGAGGGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCACAAAA 3803
Query 2989 CTTGTTGGAGTGATCGTGCTTTGCTTTGCAAGATCTGAGATATTTGTGGTGTATTACTTC 3048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3804 CTTGTTGGAGTGATCGTGCTTTGCTTTGCAAGATCTGAGATATTTGTGGTGTATTACTTC 3863
Query 3049 CAAATGTACTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGTTTTCTTACCTGTC 3108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3864 CAAATGTACTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGTTTTCTTACCTGTC 3923
Query 3109 ATACTGAGTTTAGCTGGCCCGCCGCAGCT-ACACTTGGACATCAAGCAGCAGCAGACAGA 3167
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 3924 ATACTGAGTTTAGCTGGCCCGCCGCAGCTGA-ACTTGGACATCGAGCAGCAGCAGACAGA 3982
Query 3168 CGAAGCTTCCTCTTCCCTATTGAACTGA 3195
||||||||||||||||||| ||||||||
Sbjct 3983 CGAAGCTTCCTCTTCCCTACTGAACTGA 4010
Score = 377 bits (204), Expect = 3e-103
Identities = 208/210 (99%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 2506 TGCTTTCGACACTCAGATTTGGTTCAGGATCGTCCATCTACAGCTCAATTCAGGGAGAAA 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3141 TGCTTTCGACACTCAGATTTGGTTCAGGATCGTCCATCTACAGCTCAATTCAGGGAGAAA 3200
Query 2566 CTACCCTGGTTTCTAAATGCTTTGCCATCGGCTGACTGTGCAAAAGGTGGTCACGGGGCT 2625
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3201 CTACCCTGGTTTCTAAATGCTTTGCCATCGGCTGACTGTGCAAAGGGTGGTCACGGGGCT 3260
Query 2626 TATACGAATAGCGTGGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCTGAGTTC 2685
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3261 TATACGAATAGCGTGGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCGGAGTTC 3320
Query 2686 CGTACATACCACACTCCACTTAACACACAA 2715
||||||||||||||||||||||||||||||
Sbjct 3321 CGTACATACCACACTCCACTTAACACACAA 3350
Score = 267 bits (144), Expect = 7e-70
Identities = 148/150 (99%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2356 ATATCAAGAGCGTCACAGGCTCCAGATACAAGTTACATTGCCAAACCAGCTGCTTCTTGG 2415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2925 ATATCAAGAGCGTCACAGGCTTCAGATACAAGTTACATTGCCAAACCAGCTGCTTCTTGG 2984
Query 2416 CTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCACT 2475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2985 CTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCACT 3044
Query 2476 AATGGCAGTTATTGTCCTCCAGACGACCAG 2505
||||||||||||||||||||||| ||||||
Sbjct 3045 AATGGCAGTTATTGTCCTCCAGATGACCAG 3074
Score = 159 bits (86), Expect = 1e-37
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 2716 ATTGACATCTTTCCATATTCTGTCTTCTACATTTTCTTTGAGCAATATCTGAATATCTGG 2775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3417 ATTGACATCTTTCCATATTCTGTCTTCTACATTTTCTTTGAGCAATATCTGAATATCTGG 3476
Query 2776 ACTGTAGCTTTGACGAACCTCGCTATAGCAATCGG 2810
|| ||||||||||| ||||| ||||||||||||||
Sbjct 3477 ACAGTAGCTTTGACAAACCTTGCTATAGCAATCGG 3511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158928875424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5