BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490601
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38390.1 | Symbols: RHS17 | root hair specific 17 | chr4:179... 2835 0.0
> AT4G38390.1 | Symbols: RHS17 | root hair specific 17 | chr4:17975776-17978380
FORWARD LENGTH=1922
Length=1922
Score = 2835 bits (1535), Expect = 0.0
Identities = 1748/1850 (94%), Gaps = 17/1850 (1%)
Strand=Plus/Plus
Query 1 TTTGTCCATAGTTTCTCGGCAACCAACTTCTCCTCTGCCTTAACGTCATCGAGAAATGGC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TTTGTTCATAGTTTCTCGGCAACCAACTTCTCCTCTGCCTTAACGTCATCGAGAAATGGC 145
Query 61 GTCGtcttcttcttcctccgcctcctccttttgcactctctccttcccatttctcttgtt 120
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GTCTTCTTCCTCTTCCT---CCTCCTCCTTTTGCACTCTCTCCTTCCCATTTCTCTTGTT 202
Query 121 ttcttcctATTCTTTGTAGCCTATCGTCC-TCCTTCCTTCAT-TATCGT-CGTTCTACAA 177
||||||||||||||||||||||||| ||| | ||| || | | || | |||| |||||
Sbjct 203 TTCTTCCTATTCTTTGTAGCCTATCCTCCTTGCTT--TTTTTGTGTC-TGCGTTATACAA 259
Query 178 TTAATTAATGGCCTCTTTGAAGTTGAAGAAAAGGGATAATGGCGCTGAACCCGACAAGAA 237
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CTCATTAATGGCCTCTTTGAAGTTGAAGAAAAGGGATAATGGCGCTGAACCCGACAAGAA 319
Query 238 AAAGTTGGTCATCGCAGGAATTCGCCACCAGTTACTGCTTCTCCTTCGCCGCCGTCACCG 297
|||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 320 AAAGCTGGTCATCGCCGGTATTCGCCACCAGTTACTCCTTCTCCTTCGCCGCCGTCACCG 379
Query 298 TCTATTTCCGCTGGTATCTGCCGTCTCCGGCTGTATCCTCCTCATCCTCTTCTCATTCTC 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 380 TCTATTTCCGCTGGTATCTGCCGTCTCCGGCTGTCTCCTCCTCATCCTCTTCTCATTCTC 439
Query 358 GGCCCTTTCTCCTCCTCCATTGATCCATCACAACAATCAAGTGGCCGTGGAACCCAATCC 417
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 440 CACCCTCTCTCCTCCTCCATTGATCCATCATAACAATCAAGTGGCCGTCGAACCCAATCC 499
Query 418 AGATCCAACCACCACTCCAT-TTCGTGAAAATGGTGGAAGGTCGGATCGCCAGTTATGGA 476
| | || | | ||| | | | | | |||||||| |||||||||||||||||||||||||
Sbjct 500 A-A-CC-A-CTCCATTTCGTGTACCCGAAAATGGCGGAAGGTCGGATCGCCAGTTATGGA 555
Query 477 GCTCGAGATTGTCCAACTTCTACTATGCCTGCAGCAATGCAACTGACACCTTTCAAGTTA 536
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 556 GCTCGAGATTGTCCAACTTGTACTATGCCTGCAGTAATGCAACTGACACCTTTCAAGTTA 615
Query 537 CTGATAAGACAAGGCAAACCAATCGGTATTTACTTATCGCGACAAGCGGAGGTTTAAACC 596
| |||| || ||| |||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 616 CGGATACGAGAAGCCAAACCAATCGGTATTTACTGATCGCAACAAGCGGAGGGTTAAACC 675
Query 597 AGCAACGGACAGGGATCATAGATGCTGTAGTTGCCGCATACATTCTAAACGCCACTCTTG 656
| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 676 AACAGCGGACAGGGATAATAGATGCTGTAGTAGCGGCATACATTCTAAACGCCACTCTTG 735
Query 657 TGGTCCCTAAACTTGACCAGAAGTCCTACTGGAAGGACACCAGCAACTTTGAGGATATAT 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 736 TGGTCCCTAAACTTGACCAGAAGTCGTACTGGAAGGACACCAGCAACTTTGAGGATATAT 795
Query 717 TTGATGTTGATTGGTTCATTTCGCATCTCTCCAAAGACGTCAAGATCATCAAGGAGCTTC 776
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 796 TTGATGTTGATTGGTTCATATCGCATCTCTCCAAAGACGTGAAGATCATCAAGGAGCTTC 855
Query 777 CTAAAGAAGAGCAGTCAAGAATATCCACCAGCCTACAGTCAATGCGTGTCCCAAGGAAAT 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 856 CTAAAGAAGAGCAGTCAAGAATATCCACCAGCCTACAGTCAATGCGTGTCCCAAGGAAGT 915
Query 837 GCACACCTTCTTGCTACTTGCAGCGTGTTTTGCCCATTCTTAATAAGAAACATGTTGTAC 896
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 916 GCACGCCTTCTTGCTACTTGCAGCGTGTTTTGCCCATTCTTACTAAGAAACATGTTGTAC 975
Query 897 AACTCTCCAAATTCGATTACAGGCTGTCCAACAATCTTGATACAGAGCTCCAGAAACTGC 956
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 976 AACTCTCCAAATTCGATTACAGGCTGTCCAACGCTCTTGATACAGAGCTCCAGAAACTGC 1035
Query 957 GTTGTAGAGTGAACTACCATGCGGTGAGATATACAGAGTCTATCAACAGGATGGGCCAAT 1016
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1036 GTTGTAGAGTCAACTACCATGCCGTCAGGTATACAGAGTCTATCAACAGGATGGGCCAAT 1095
Query 1017 TGTTGGTTGACCGGATGAGAAAAAAGGCCAAATATTTCGTTGCCCTTCATCTCAGGTTCG 1076
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 1096 TGTTGGTTGACCGGATGAGAAAAAAGGCCAAACATTTTGTTGCCCTTCATCTCAGATTCG 1155
Query 1077 AACCTGATATGCTGGCCTTCTCCGGGTGCTATTACGGCGGTGGTCAAAAAGAGAGACTCG 1136
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1156 AACCTGATATGCTGGCCTTCTCCGGATGCTATTACGGCGGTGGTCAAAAGGAGAGACTCG 1215
Query 1137 AACTCGGAGCTATGAGAAGAAGGTGGAAAACGTTACATGCGGCAAACCCTGAAAAGGTAC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AACTCGGAGCTATGAGAAGAAGGTGGAAAACGTTACATGCGGCAAACCCTGAAAAGGTAC 1275
Query 1197 GGCGGCACGGGAGATGTCCCCTGACGCCAGAGGAGATTGGTCTGATGCTCAGAGGCTTAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GGCGGCACGGGAGATGTCCCCTGACGCCAGAGGAGATTGGTCTGATGCTCAGAGGCTTAG 1335
Query 1257 GTTTTGGGAAAGAGGTTCACTTGTACGTTGCATCAGGCGAGGTATACGGAGGGGAGGTTA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1336 GTTTTGGGAAAGAGGTTCACTTGTACGTTGCATCAGGCGAGGTATACGGAGGGGAGGATA 1395
Query 1317 CATTGGCACCGTTAAGAGCTCTGTTTCCAAATCTCCATACAAAAGAGACACTGACCTCCA 1376
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1396 CATTGGCACCTTTAAGAGCTCTGTTTCCGAATCTTCATACAAAAGAGACACTGACCTCCA 1455
Query 1377 AGAAAGAACTGGCTCCGTTTGCAAACTTCTCATCACGCATGGCTGCTCTTGACTTCATTG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 AGAAAGAACTGGCTCCGTTTGCAAACTTCTCATCACGCATGGCTGCTCTTGACTTCATTG 1515
Query 1437 TCTGTGATAAGAGCGACGCATTTGTCACCAACAACAACGGCAACATGGCTAGAATCTTAG 1496
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1516 TCTGTGATAAGAGCGACGCATTTGTCACAAACAACAACGGCAACATGGCTCGAATCTTAG 1575
Query 1497 CTGGGAGAAGGAGATACTTGGGGCACAAAGTGACCATCCGTCCAAACGCCAAGAAACTCT 1556
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1576 CTGGGAGAAGGAGATACTTGGGACACAAAGTAACCATCCGTCCAAACGCCAAGAAACTCT 1635
Query 1557 ACGAGCTCTTCAAAAATAGACACAACATGACATGGGATGATTTCTCATCCAAGGTCCGAA 1616
|||| |||||||||||||||||||||||||||||| ||| |||||||| |||||| |||
Sbjct 1636 ACGAAATCTTCAAAAATAGACACAACATGACATGGGGTGAGTTCTCATCGAAGGTCAGAA 1695
Query 1617 GATACCAGACGGGTTTCATGGGGGAACCAGATGAAATGAAACCAGGAGAGGGCGAGTTCC 1676
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1696 GATACCAGACGGGTTTCATGGGGGAGCCAGATGAAATGAAACCAGGAGAGGGGGAGTTCC 1755
Query 1677 ATGAGAACCCAGCCTCCTGCATTTGTCGAACCTCTGAAGCAAGAGTCGTGaaaaaaaaaG 1736
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1756 ATGAGAACCCAGCCTCCTGCATTTGTCGAACCTCTGAAGCAAGAGTC---AAAGAAAAAG 1812
Query 1737 CAAAACATGTAAATGAGGATGACTCATCGGAGTACTCAGACATTGGCAATGTCCCCATAG 1796
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1813 CAAAACATGTAAATGAAGATGACTCATCGGAGTACTCAGAGATTGGTAATGTCCCCATAT 1872
Query 1797 CTAGTGGAAGCGATTTGGATCACTCACAAGTTGATGAAGAGATCTTCTGA 1846
| ||| ||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1873 CCAGTAGAAGCGATTTGGATCACTCACAATTTGATGAAGTGATCTTCTGA 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5