BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490602
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38400.1 | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2... 1382 0.0
AT3G45970.1 | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1... 782 0.0
AT3G45960.2 | Symbols: ATEXLA3, EXPL3, ATEXPL3, ATHEXP BETA 2.3... 745 0.0
> AT4G38400.1 | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2,
EXLA2 | expansin-like A2 | chr4:17978443-17979740 REVERSE
LENGTH=1105
Length=1105
Score = 1382 bits (748), Expect = 0.0
Identities = 848/896 (95%), Gaps = 8/896 (1%)
Strand=Plus/Plus
Query 5 AAGGCTTTCTCTTCCTCCTCTCAGTCGT-CTTCCTCTTCTCCTCATCTGCAGCCGCCTGC 63
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 83 AAGGCTTTCTCTTCCTCCTCTCAGTCGTAC-TCCTCTTCTCCTCATCTGCAGCCGCCTGC 141
Query 64 GACCGATGTCTTCACCGTTCTAAGGCTGCTTATTTCTCCTCTGCCTCTGCTCTCTCCTCC 123
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 142 GACCGATGTCTTCACAGTTCTAAGGCAGCTTATTTCTCCTCTGCATCTGCTCTCTCCTCT 201
Query 124 GGAGCTTGTGCCTATGGCTCTATGGCTACGGGTTTCTTCGCCGGACACATTGCCGCGGCT 183
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 202 GGAGCTTGTGCATATGGCTCTATGGCTACCGGTTTCTTCGCCGGACACATTGCTGCGGCT 261
Query 184 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGTACG 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 262 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGCAAG 321
Query 244 AACCCGACCCTTTGCAGCAGCAAAGGAACAACGGTGA-TGCTCACAGACCTGAACAAGAG 302
|||||||| |||||||||||||||||||| ||||||| || |||||||| |||||||||
Sbjct 322 AACCCGACGCTTTGCAGCAGCAAAGGAACCACGGTGATTG-TCACAGACTTGAACAAGAC 380
Query 303 CAACCAAACCGATCTTATCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 362
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CAACCAAACCGATCTTGTCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 440
Query 363 TGGCTCCGACAGAGATCTTCTCAAACAAGGCCTTGTCGACATTGAATACAGGAGAGTTCC 422
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 441 TGGCGCCGACAGAGATCTTCTCAAACAAGGCATTGTCGATATTGAATACAGGAGAGTTCC 500
Query 423 TTGCGATTACGGGAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCATAAATCCAAA 482
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 501 TTGCGATTACGGTAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAAAAATCCAAA 560
Query 483 CTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACCGAAGTGGTAGCCATTGACAT 542
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 561 CTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACTGAAGTGGTAGCCATTTACAT 620
Query 543 TGCTCACGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGGAGCCGTGTGGGT 602
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGCTCAGGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGGAGCCGTGTGGGT 680
Query 603 TACTGACAAAGTA-CCAACCGGAGCTCTGCAGTTCAGGTTCGTGGTGACCGCAGGCTACG 661
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TACTGACAAAGTACCCAA-CGGAGCTCTGCAGTTCAGGTTCGTGGTGACCGCAGGCTACG 739
Query 662 ACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCCGCTAACTGGGAAGCTGGGAAGACCT 721
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 740 ACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCAGCTAACTGGGAAGCTGGAAAGTCCT 799
Query 722 ATGACGCCGGCGTTCAGATCACCGACATTGCTCAGGAAGGTTGTGATCCATGCGACGATC 781
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 800 ATGACGCCGGCGTTCAGATCACAGACATTGCTCAGGAAGGTTGTGATCCATGCGACGATC 859
Query 782 ACATCTGGAACTGACTCACTCCAACTCTC-TACTTATGCGTACGTAACAGACTTGTTTAT 840
|||||||||||||| || ||| || || | || ||| ||| |||||||||||||||||
Sbjct 860 ACATCTGGAACTGAGTCTCTCTG-CTTTCCTTCTAATGTGTAAGTAACAGACTTGTTTAT 918
Query 841 TTGACGAGAGGAAGAATAAACGGGAATGCATTATCTGACGATTCCATAAGAATGAA 896
| || |||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 919 TAGATGAGAGGAAGAATCAACGGGAATGCATAATCTGACGATTTCATAAGAATGAA 974
> AT3G45970.1 | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1,
EXLA1 | expansin-like A1 | chr3:16896166-16897308 FORWARD
LENGTH=989
Length=989
Score = 782 bits (423), Expect = 0.0
Identities = 678/801 (85%), Gaps = 18/801 (2%)
Strand=Plus/Plus
Query 3 GGAAGGCTTTCTCTTCCTCCTC-TCAGTCGTCTTCCTCTTCTCCTCATCTG-CAGCCGCC 60
|||| |||||||||||||| || | |||| ||||||||||||| ||||| | | |||
Sbjct 76 GGAA-GCTTTCTCTTCCTCATCGT-AGTCATCTTCCTCTTCTCTTCATCCGTTA-ACGCT 132
Query 61 TGCGACCGATGTCTTCACCGTTCTAAGGCTGCTTATTTCTCCTCTGCCTCTGCTCTCTCC 120
|| || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 133 TGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCCTCTGCTCTCTCT 192
Query 121 TCCGGAGCTTGTGCCTATGGCTCTATGGCTACGGGTTTCTTCGCCGGACACATTGCCGCG 180
|| ||||||||||| |||||||||||||||||| |||||||||||||||| || || ||
Sbjct 193 TCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGACATATCGCTGCA 252
Query 181 GCTCTGCCTTCCATCTACAAAGACGGCTCC-GGCTGCGGAGCTTGCTTCCAGGTCAGATG 239
||| | ||||| |||||||||||||| | | ||||| ||||||||||| || ||||||||
Sbjct 253 GCTATCCCTTCTATCTACAAAGACGG-TGCTGGCTGTGGAGCTTGCTTTCAAGTCAGATG 311
Query 240 TACGAACCCGACCCTTTGCAGCAGC-AAAGGAACAACGGTGATGCTCACAGACCTGAACA 298
| |||||| | || || |||| | |||||||| | |||||| |||||||| | ||||
Sbjct 312 CAAGAACCCTAAGCTGTGTAGCA-CTAAAGGAACCATTGTGATGATCACAGACTTAAACA 370
Query 299 AGAGCAACCAAACCGATCTTATCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTG 358
|||| ||||||||||||||| ||||||| |||||||| ||||| || |||||||| |||
Sbjct 371 AGAGTAACCAAACCGATCTTGTCCTTAGTAGCAGAGCTTTTAGAGCTATGGCTAAACCTA 430
Query 359 TTGTTGGCTCC-GACAGAGATCTTCTCAAACAAGGCCTTGTCGACATTGAATAC-AGGAG 416
||||||| | | |||| ||| ||||||||||||||| |||||||||| |||||| | ||
Sbjct 431 TTGTTGG-TGCTGACAAAGACCTTCTCAAACAAGGCATTGTCGACATCGAATACCAA-AG 488
Query 417 AGTTCCTTGCGATTACGGGAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAT-AA 475
|||||||||||||||||| |||||||| |||||||||||||| |||||| |||||| ||
Sbjct 489 AGTTCCTTGCGATTACGGCAACAAGAACATGAACGTGAGAGTAGAAGAAGCAAGCAAGAA 548
Query 476 ATCCAAACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACCGAAGTGGTAGCCA 535
| ||||||||||| | ||||||||| || ||||||||||| ||||| ||||| ||| |||
Sbjct 549 A-CCAAACTACTTAGAGATAAAGCTTTTATACCAAGGAGGTCAAACAGAAGTAGTATCCA 607
Query 536 TTGACATTGCTCACGTTGGTTCGTCAC-A--TTGGAGTTACATGACCAGAAGCCACGGAG 592
| ||||||||||| || ||||| || | | |||| |||||||||| |||||||||||||
Sbjct 608 TCGACATTGCTCAAGTCGGTTCATCGCCAAATTGGGGTTACATGACAAGAAGCCACGGAG 667
Query 593 CCGTGTGGGTTACTGACAAAGTACCAACCGGAGCTCTGCAGTTCAGGTTCGTGGTGACCG 652
| || ||||| |||||||||||||| ||||||||| | |||||||||||||| || ||||
Sbjct 668 CTGTTTGGGTAACTGACAAAGTACCCACCGGAGCTATCCAGTTCAGGTTCGTAGTAACCG 727
Query 653 CAGGCTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCCGCTAACTGGGAAGCTG 712
|| |||||||| |||||| | ||||| ||||| || ||||| | || ||||||||||
Sbjct 728 GTGGATACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTGGGAAGCTG 787
Query 713 GGAAGACCTATGACGCCGGCGTTCAGATCACCGACATTGCTCAGGAAGGTTGTGATCCAT 772
|||| | || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 788 GGAAAATTTACGACGCCGGTGTTCAAATCACTGACATTGCTCAAGAAGGTTGTGATCCTT 847
Query 773 GCGACGATCACATCTGGAACT 793
|||| | ||||||||||||||
Sbjct 848 GCGATGCTCACATCTGGAACT 868
> AT3G45960.2 | Symbols: ATEXLA3, EXPL3, ATEXPL3, ATHEXP BETA 2.3,
EXLA3 | expansin-like A3 | chr3:16892756-16893900 FORWARD
LENGTH=973
Length=973
Score = 745 bits (403), Expect = 0.0
Identities = 687/822 (84%), Gaps = 27/822 (3%)
Strand=Plus/Plus
Query 1 ATG-GAAGGCTTTCTCTTCCTCCTC-TCAGTCGTCTTCCTCTTCTCCTCATCTG-CAGCC 57
||| ||| ||||||||| |||| || | |||| ||||||||||||| ||||| | | |
Sbjct 71 ATGAGAA-GCTTTCTCTACCTCATCGT-AGTCATCTTCCTCTTCTCTTCATCCGTTA-AC 127
Query 58 GCCTGCGACCGATGTCTTCACCGTTCTAAGGC-TGCTTATTTCTCCTCTGCCTCTGCTCT 116
|| || || |||||||| ||||||||||| || | |||||||||||||||| ||||||||
Sbjct 128 GCTTGTGATCGATGTCTACACCGTTCTAAAGCAT-CTTATTTCTCCTCTGCTTCTGCTCT 186
Query 117 CTCCTCCGGAGCTTGTGCCTATGGCTCTATGGCTACGGGTTTCTTCGCCGGACACATTGC 176
||| ||||| ||||||||||||||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 187 CTCTTCCGGGGCTTGTGCCTATGGCCCTATGGCTACGAGCTTCTTTGCCGGCCACATTGC 246
Query 177 CGCGGCTCTGCCTTCCATCTACAAAGACGGCT-CCGGCTGCGGAGCTTGCTTCCAGGTCA 235
|| ||| | |||||||| |||||||| || | | ||||| ||||||||||| || ||||
Sbjct 247 GGCCGCTATACCTTCCATTTACAAAGATGG-TGCTGGCTGTGGAGCTTGCTTTCAAGTCA 305
Query 236 GATGTACGAACCCGACCCTT-TGCAGCAGCAAAGGAACAACGGTGATGCTCACAGACCTG 294
|||| | |||||| | || || | ||| |||||||| | |||||| |||||||| ||
Sbjct 306 GATGCAAGAACCCCA-AGTTGTGTAACAGTAAAGGAACCATTGTGATGGTCACAGACTTG 364
Query 295 AACAAGAGCAACCAAACCGATCTTATCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAG 354
|||| |||||||||||| |||||| ||||||| || ||||| |||||||| |||||||||
Sbjct 365 AACACGAGCAACCAAACTGATCTTGTCCTTAGTAGTAGAGCTTTTAGGGCTATGGCTAAG 424
Query 355 CCTGTTGTTGGCT-CCGACAGAGATCTTCTCAAACAAGGCCTTGTCGACATTGAATA-CA 412
||||||||||| | |||| | | ||||||||||||||| | |||||| ||||||| ||
Sbjct 425 CCTGTTGTTGG-TGTTGACAAATACCTTCTCAAACAAGGCATCGTCGACGTTGAATACCA 483
Query 413 GGAGAGTTCCTTGCGATTACGGGAACAA-GAAGATGAACGTGAGAGTTGAAGAATCAAGC 471
|||||||||||| ||||||| || || ||| ||||||||||||| |||||| |||||
Sbjct 484 -AAGAGTTCCTTGCAATTACGGTAA-AAGGAATTTGAACGTGAGAGTGGAAGAAGCAAGC 541
Query 472 ATAAATCCAAACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACCGAAGTGGTA 531
| ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 542 AAAAAGCCAAATTACTTGGCGATAAAGCTATTGTACCAAGGAGGTCAAACCGAAGTGGTA 601
Query 532 GCCATTGACATTGCT-CACGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGG 590
| || ||||||||| || || ||||||||||| ||||||||||||| |||||||||||
Sbjct 602 GGTATCGACATTGCTCCA-GTAGGTTCGTCACAATGGAGTTACATGAGTAGAAGCCACGG 660
Query 591 AGCCGTGTGGGTTACTGACAAAGTACCAACCGGAGCTCTGCAGTTCAGGTTCGTGGTGAC 650
|||||| |||| || || ||||||||||| |||||||| ||||||| |||| ||||||
Sbjct 661 AGCCGTTTGGGCGACCGATAAAGTACCAACGGGAGCTCTACAGTTCAAGTTCACGGTGAC 720
Query 651 -CGCAGGCTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCCGCTAACTGGGAA- 708
|| |||||||| ||||||| ||| ||||| ||||||| ||||| || || | ||||
Sbjct 721 AGGC-GGCTACGATGGCAAAACGGTTTGGTCAAAGAGGGTTCTTCCGGCGAA-TTGGAAC 778
Query 709 GCTGGGAAGACCTATGACGCCGGCGTTCAGATCACCGACATTGCTCAGGAAGGTTGTGAT 768
|||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 TCTGGGAGGATTTATGATGCCGGCGTTCAGATCACCGACATTGCTCAAGAAGGTTGTGAT 838
Query 769 CCATGCGACGATCACATCTGGAACTGACTCACTCCAACTCTC 810
|||||| | |||||| ||||||||||||| | ||| ||||
Sbjct 839 ACATGCG--G-TCACATATGGAACTGACTCATTACAATTCTC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5