BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490603

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38410.1 | Symbols:  | Dehydrin family protein | chr4:179809...   894    0.0  


> AT4G38410.1 | Symbols:  | Dehydrin family protein | chr4:17980940-17981719 
FORWARD LENGTH=692
Length=692

 Score =  894 bits (484),  Expect = 0.0
 Identities = 537/562 (96%), Gaps = 5/562 (1%)
 Strand=Plus/Plus

Query  24   AAAAGTGAGTCTTGAATA-CTAGTTTGCG-TTTTCCTAAAAGATGGCGGATCATCCTCGT  81
            |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct  44   AAAAGTGAGTCTTGAATACCTTGTTTGCGTTTTTCCTAAAAGATGGCGGATCATCCTCGT  103

Query  82   TCTAGTGAGCAGCAAGAAGCTGATGTTGCAGCTTCCAAAGGCTGTGGGATGTTTGACTTT  141
            |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  104  TCTACTGAGCAGCAAGAAGCTGATGCTGCAGCTTCCAAAGGCTGTGGGATGTTTGACTTT  163

Query  142  CTCAAGAAGAAACCCGAAGATGTACATTCTTCCGAGAATGCCGGTGTAACCAAGGAGCCC  201
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  164  CTCAAGAAGAAACCCGAAGATGTACATTCTTCCGAGAATGCCCGTGTAACCAAGGAGCCC  223

Query  202  AAGGAAGAGGAGAAGCCTTCTCTCGCTGAAAGACTCCACCTTTCTGACAGCTCTTCAAGT  261
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  224  AAGGAAGAGGAGAAGCCTTCTCTCGCTGAAAGATTCCACCTTTCTGACAGCTCTTCAAGT  283

Query  262  GATGAGGAAGCGGGTGAAAATGGggaaaagaaggagaaggagaagaagaacaagaagaag  321
            ||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||
Sbjct  284  GATGAGGAAGCGGGTGAAAATGGGGAAAAGAAGGAGAAGAAGAAGAAGAA---GAAGAAG  340

Query  322  aaggaagTTGTTGCAGCTCAATGTGAAACAGAGGAGAAGCTTCCTGCGGGTAGAGGTCAT  381
            || ||||||| || || |||||||||||||||||||||| |||||||||||| ||| |||
Sbjct  341  AATGAAGTTGCTGAAGATCAATGTGAAACAGAGGAGAAGATTCCTGCGGGTATAGGCCAT  400

Query  382  GAGGATGGGAAGGAGAAAGGGTTTATGGAGAAGATGAAGGATAAGCTTCCCGGAGGTCAC  441
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  401  GAGGATGGGAAGGAGAAAGGGTTTATGGAGAAGATAAAGGATAAGCTTCCCGGAGGTCAC  460

Query  442  CATGGAAAGCCTGAAGCTGAACCTCATAATGACAAGGGCAAGGAGAAAGGGTTTATGGAG  501
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct  461  AATGGAAAGCCTGAAGCTGAACCTCATAATGACAAGGCCAAGGAGAAAGGGTTTATGGAA  520

Query  502  AAGATCAAAGAGAAGCTTCCCGGTCATACCAATGATGAGAAGAAGAAGGAAACGTAGTTA  561
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  521  AAGATCAAAGAGAAGCTTCCTGGTCATACCAATGATGAGAAGAAGAAGGAAACCTAGTTA  580

Query  562  TAGGAAGACCCttttttttttt  583
            || |||||||||||||||||||
Sbjct  581  TAAGAAGACCCTTTTTTTTTTT  602



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5