BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490604
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17... 2638 0.0
AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888... 1352 0.0
> AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17985372
FORWARD LENGTH=1915
Length=1915
Score = 2638 bits (1428), Expect = 0.0
Identities = 1589/1667 (95%), Gaps = 10/1667 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTGTCAAAGCGAGTATGGGCTGGTGGCTAAATGGCGCCGTTTGTACGATGAT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 45 TCTTCTTCTTGTCAAAGCGAGTATGTGCTGGTGGCTAAATGGGGCCGTTTGGACGATGAT 104
Query 61 GATG--G-CCATATCCACCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 117
|||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GATGATGACGATATCCATCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 164
Query 118 CTGGAGGGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CTGGAGAGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 224
Query 178 TAACGGACTATATCCTGGACCCGATATTTACTCCGTCACCAACGACAATTTGATCATCAA 237
||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 225 AAACGGACAATATCCAGGACCCGATATTTACTCAGTCACCAATGACAATTTGATCATCAA 284
Query 238 TGTTCACAACGATCTTGACGAACCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 297
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGTTCACAACGATCTCGACGAGCCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 344
Query 298 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGCAAAAATTA 357
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 345 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTA 404
Query 358 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGC 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 405 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGC 464
Query 418 CGTTCACAAAGCCGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 477
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CGTTCACAAAGCTGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 524
Query 478 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTGAGCA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 525 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTAAGCA 584
Query 538 TGACCACAAGGCTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTGAAGG 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 585 TGACCACAAGGTTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTCAAGG 644
Query 598 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATTTCTTCACTT-ACAGTCCACAAAGGTA 656
||||||||||||||||||||||||||||||||| ||||| | | || |||||||||||||
Sbjct 645 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATGTCTTC-CATCACCGTCCACAAAGGTA 703
Query 657 AAACATACAGATTTAGAATATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAATCC 716
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 704 AAACATACAGATTTAGGATATCGAATGTAGGGCTTCAACACACTCTGAATTTCAGAATCC 763
Query 717 AAGGTCATCAGATGAAGCTCGTCGAGGTTGAGGGAACCCATACCA-TACAGTCCATGTAT 775
|||||||||||||||||||||| ||||| |||||||| || || | | ||||||||||||
Sbjct 764 AAGGTCATCAGATGAAGCTCGTTGAGGTAGAGGGAACACACAC-AGTCCAGTCCATGTAT 822
Query 776 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCT 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCT 882
Query 836 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCTTGGTCTCA 895
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 883 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTCA 942
Query 896 TCCACTATCCACTACTCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATTCTGTC 955
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 943 TCTACTATCCACTACTCCAACTCAAGACATAGCC---ACTCATCTTCTGCTAATTCAGTC 999
Query 956 CATGCTGAGCAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGA 1015
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CATGTTCAACAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGG 1059
Query 1016 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGA 1075
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1060 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGTTCGTACCACTATGGTCGA 1119
Query 1076 ATCAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAA 1135
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1120 ATCAAGATTTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAA 1179
Query 1136 CGCTACGCCATAAACGGAGTGTCGTTTGTAGCTGCAGATACTCCGCTAAAGCTTGCAGAT 1195
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||
Sbjct 1180 CGCTACGCCATAAACGGAGTGTCGTTTGTACCTGGAGATACTCCGCTAAAGCTTGCGGAT 1239
Query 1196 TACTTCAAGATCAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGG 1255
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1240 TACTTCAAGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGA 1299
Query 1256 GGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1359
Query 1316 ATATTTCAAAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGG 1375
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1360 ATATTTCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGG 1419
Query 1376 GTTGTCGGGATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGG 1435
||||| |||| |||||||||||||||||| |||| || ||||||||||||||||| |||
Sbjct 1420 GTTGTTGGGACGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGG 1479
Query 1436 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTA 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTG 1539
Query 1496 GCACTGGACAATGTGGGGATGTGGAATCTAAGGACTGAATATTGGGCGAGGCAATACTTA 1555
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1540 GCACTGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATATTGGGCGAGGCAATACTTG 1599
Query 1556 GGCCAACAATTCTACCTCCAAGTTTATTCTCAAACACACTCTCTTAGAGATGAATATCTT 1615
|| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1600 GGTCAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTT 1659
Query 1616 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC 1662
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1660 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAACACAC 1706
Score = 171 bits (92), Expect = 3e-41
Identities = 111/120 (93%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1690 TATGTTGAGTTCTTTATTCTTTAT-ATTTCGATAGCGAGATATATGTTGCACAATTATTA 1748
||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1769 TATATTGAGTTCTTTATTCTTTATAATTTCAATAGCTAGATATATGTTGCACAATTATTA 1828
Query 1749 -ATCTACTACATAAATTGTAATGTACACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1807
|| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1829 TATATACTTCAAAAATTGTAATGTATACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1888
> AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888-13964229
REVERSE LENGTH=1644
Length=1644
Score = 1352 bits (732), Expect = 0.0
Identities = 1377/1681 (82%), Gaps = 73/1681 (4%)
Strand=Plus/Plus
Query 29 TGGTGGCTAAATGGCGCCGTTTGTACGATGATGATGGCCA-TATCCACCATTTCTTTTGT 87
|||||| |||| || | ||||| | |||||||||| | | | ||| ||||||||||||
Sbjct 7 TGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGA-CCATCATTTCTTTTGT 65
Query 88 TCAAGCTGATGATCCCTACCGTTTTTT-CGACTGGAGGGTCACTTACGGCAACATTTCTC 146
| ||||||| || |||| |||||| | |||||||||||||||||||||| ||| ||
Sbjct 66 TAAAGCTGAAGA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCAAGATTGCT- 120
Query 147 CACTTGGCA--TT-CCTCAAAGGGGAATCCTGATTAACGGACTATATCCTGGACCCGATA 203
|| | || || |||| |||||||||||| || ||||||| || ||||||||| || |
Sbjct 121 --CTAGACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGA 178
Query 204 TTTACTC-CGTCACCAACGACAATTTGATCATCAATGTTCACAACGATCTTGACGAACCC 262
|| ||| | ||||||| ||||||||| ||||||||||||| |||||||| ||||| |||
Sbjct 179 TTCGCTCAC-TCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCC 237
Query 263 TTTCTCTTATCTTGGAACGGAGTGCA-ACTGAGGAAGAATTCTTACCAAGATGGAGTGTA 321
||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||
Sbjct 238 TTTCTCTTATCTTGGAATGGAGTGCATA-TGAGGAAAAATTCTTACCAAGATGGAGTGTA 296
Query 322 TGGGACGACTTGTCCAATCCCACCGGGCAAAAATTACACTTATGCCATCCAAGTCAAAGA 381
|||||||| ||||||||||||||| ||||| ||||||||||||| | | |||||||||||
Sbjct 297 TGGGACGAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGA 356
Query 382 CCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGCCGTTCACAAAGCCGCCGGTGGTTT 441
||| ||||||||| |||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 357 TCAGGTCGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGCGGCCGGTGGTTA 416
Query 442 TGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCTG 500
|||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 417 TGGCAGCCTCCGTAT-ATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAG 475
Query 501 GAGATTTCACCTTCCTCATTGGTGATTGGTTT-GAGCATGACCACAAGGCTTTGAAGGCA 559
|||||||||||||||| | ||||||| | || | | |||| | | |||||||| |
Sbjct 476 AAGATTTCACCTTCCTCGTAAACGATTGGTATCGA-CGTAACCATACGACTTTGAAGAAA 534
Query 560 ATTTTGGATAGAGGACACAAGCTACC-TT--TGCCTGAAGGGGTTTTGATCAATGGCCAA 616
||||||||| |||||| |||| |||| || ||||||| |||||| |||||||||||||
Sbjct 535 ATTTTGGATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAG 594
Query 617 GGAGTCAGTTACA-TTTCTTC-ACTTACAGTCCACAAAGGTAAAACATACAGATTTAGAA 674
||||| ||| || ||| ||| | | || ||| ||||||||||||| |||||||| |||
Sbjct 595 GGAGTAAGT-ACTGTTTATTCTA-TCACCGTCGACAAAGGTAAAACGTACAGATTCAGAG 652
Query 675 TATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAA-TCCAAGGTCATCAGATGAAG 733
|||| |||||||||||||||| | | |||||||| |||| | |||||||||| | |||
Sbjct 653 TATCAAATGTAGGGCTTCAAACCTCCCTGAATTT-AGAAATATTAGGTCATCAGCTTAAG 711
Query 734 CTCGTCGAGGTTGAGGGAACCCATACCATACAGTCCATGTATACCTCTCTCGACATTCAC 793
||| | ||||| || |||||||| || | || ||||||| || || |||||||||||
Sbjct 712 CTCATTGAGGTCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCAT 771
Query 794 GTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCTGAC-CAAGACTATGACAT 852
||||| || ||||||| ||||||||||||||||||| ||| | ||| ||||| |||
Sbjct 772 GTTGGTCAAACTTACTCTTTCTTGGTCACCATGGACCAACCTC-CTCAAAACTATTCCAT 830
Query 853 TGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCT-TGGTCTC-ATCCACTATCCACTAC 910
|||||| ||||||| |||| | | | || | | || || | | ||||| ||||||||
Sbjct 831 TGTCGTTTCCACAAGATTTATCAACGCAGAAGT-TGTGATC-CGAGCCACTCTCCACTAC 888
Query 911 TCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATTCTGTCCATGCTGAGCAACCT 970
|||||||| | | | | | || | | | | | | ||| | || || | ||||
Sbjct 889 TCCAACTCCA-A-A--G--GTCA-TAAGATTAT-C-A---CTG-C---GC-GA-CGACCT 930
Query 971 G--CC-GATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGAACCAATCTAACC 1027
| || ||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 931 GATCCAGATGATGTAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTAACT 990
Query 1028 GCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGAATCAAGATTTCT 1087
||||| ||||||||| |||||||||| ||||| ||||| |||||| ||| |||||||||
Sbjct 991 GCGTCGGGGCCAAGGACTAACCCTCAAGGCTCATACCATTATGGTAAAATGAAGATTTCT 1050
Query 1088 AGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAACGCTACGCCATA 1147
||||||||||||||||||||||||||||| | |||| || ||||||||||| ||||||
Sbjct 1051 AGGACTTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGCCATA 1110
Query 1148 AACGGAGTGTCGTTTGTAGC-TGCAGATACTCCGCTAAAGCTTGCAGATTACTTCAAGAT 1206
|| || || ||||| || || | | ||||||||||| |||||||| ||| | ||||| ||
Sbjct 1111 AATGGCGTATCGTTCGT-GCCTTCGGATACTCCGCTGAAGCTTGCGGATCATTTCAAAAT 1169
Query 1207 CAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGGGGAGGGATGAG 1266
|||| ||||| ||||| |||| |||||||||||||||||||||||| ||||| || ||
Sbjct 1170 AAAAGATGTTTTTAAAGTTGGAACCATCCCTGACAAGCCGAGAAGAGGAGGAGGAATAAG 1229
Query 1267 AATGGAGAC-GTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATTTCA 1323
| || || | ||||||||||||||||||| | | | ||| ||||| ||||| |||||
Sbjct 1230 GCTAGACACAG-CAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTTTCA 1286
Query 1324 AAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGGGTTGTCGG 1383
||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 1287 AAACCGCGAGAAGATCGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGTTGG 1346
Query 1384 GATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGGGATGCTAT 1443
||| ||| ||||| |||||| | ||||| |||||||||||||| |||| |||||||||
Sbjct 1347 GATCAATAAAGGAATATGGTCACGTGCGAGCAGACGAGAGTATAACCTCAAGGATGCTAT 1406
Query 1444 TTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTAGCACTGGA 1503
||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct 1407 ATCTCGCTCCACTACTCAAGTATATCCAAAATCTTGGACAGCTGTATATGTGGCATTGGA 1466
Query 1504 CAATGTGGGGATGTGGAATCTAAGGA-CTGAATAT-TGGGCGAGGCAATACTTAGGCCAA 1561
|||||||||||||||||||||||||| | | | | |||||||| ||||||||||| |||
Sbjct 1467 CAATGTGGGGATGTGGAATCTAAGGAGCC-AGT-TCTGGGCGAGACAATACTTAGGTCAA 1524
Query 1562 CAATTCTACCTCCAAGTTTATTCTC-AAACACACTCTCTTAGAGATGAATATCTTTTGCC 1620
||||||||||| | |||| |||||| ||| ||||||| | ||||||||| | ||||||
Sbjct 1525 CAATTCTACCTTCGAGTTCATTCTCCAAAT-CACTCTCCCAAAGATGAATACCCTTTGCC 1583
Query 1621 TAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC-TCCCATTACCACTCCTT 1679
|||||||||||||||||||| || ||||||| ||| ||| ||| || | ||||||||
Sbjct 1584 AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAAAACATGTCC-ATCATCACTCCTT 1642
Query 1680 A 1680
|
Sbjct 1643 A 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5