BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490605
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleoti... 2863 0.0
> AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide
exchange factor 1 | chr4:17986466-17988807 FORWARD LENGTH=1972
Length=1972
Score = 2863 bits (1550), Expect = 0.0
Identities = 1822/1944 (94%), Gaps = 55/1944 (3%)
Strand=Plus/Plus
Query 1 GAAAGGAGTCttttttattttttatctctca------tctctc---atctct--gctttg 49
|||||||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct 1 GAAAGGAGTCTTTTTTATTTGTTATCTCTCATCTCTCTCTCTCTTTCTCTCTGAGCTTTG 60
Query 50 ctttttatcAAACAAGCTCGCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCT- 108
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTTATCAAACAA----GCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCTG 116
Query 109 T-TG--------CCCAAATGTGGATTCTTTGAGCCGTTATTAGATCTCTGCCGCCTACCT 159
| || |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 117 TCTGTCTCTTAACCCAAATGTGGACTCTTTGAGCCGTTATTAGATCTCTGCCG-CT---T 172
Query 160 ACAATAATGGGGAGCTTATCTTCTGAGGAAGACGACCAAGTCTCTTCCGAGAGATGCGGA 219
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 173 -CAATAATGGGGAGCTTATCTTCTGAGGAAGACGACGAAGTCTCTTCCGAGAGATGCGGA 231
Query 220 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCTGAGAGTT-C--CA----------CCA- 265
|||||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 232 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCCGAGAGTTCCAGCAGCTTCTCCTGCCAC 291
Query 266 -GCTTCGACGGCGAGGGACCCTCTAGCTCCATCCCTTCTTCCCCCCGGGTTGTCGCTGGG 324
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 292 CGCTTCGACGGCGAGGGTGCCTCTAGCTCCATCCCTTCTTCCCCTCGAGTTGTCGCTGGT 351
Query 325 AGAGGCTTTTACTTCCC-GCCGCCAGTTATGCTTCCGGTGATCGGCGGCAAAGATGTGCT 383
||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 352 AGAGGATTTTACTTCCCGGCC-CCAGTCATGCTTCCGGTGATCGGCGGCAAAGATGTGGT 410
Query 384 CTGGGATGACAAACAGTCAGACAACAACGATTTCTCCGAAATTGAGATGATGAAGGAGAG 443
||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 411 CTGGGATGACAAACAACCAG---ACAACGATTTATCCGAAATTGAGATGATGAAGGAGAG 467
Query 444 ATTTGCTAAGCTACTTCTCGGAGAAGACATGTCAGGAGGAGGTAAAGGTGTTTGTACGGC 503
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct 468 ATTTGCTAAGCTACTTCTCGGGGAAGACATGTCTGGTGGAGGTAAAGGGGTTTGTACGGC 527
Query 504 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTCTTCGGCGAGCTATGGAG 563
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 528 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTGTTTGGCGAACTATGGAG 587
Query 564 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCTATGTGGCGCAGAGAACTTGAATGGCTACT 623
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 588 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCCATGTGGCGCAGAGAACTTGAGTGGCTGCT 647
Query 624 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCCTTCAGCACTTCCCCGGAGGCGG 683
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 648 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCATTCAGCAGTTCCCTGGAGGCGG 707
Query 684 CACTTATGAGATCATGGAGACCCGTCCACGCTCTGATCTCTATGCCAATCTCCCTGCTCT 743
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 708 AACTTATGAGATCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCCCTGCTCT 767
Query 744 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACCGAGTTCTG 803
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 768 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACTGAGTTCTG 827
Query 804 GTATACTGATCGCGGCATTGTTCTTGGAGAATGTGACAAGGATTCTTACAATTCCCCAGC 863
||| |||||||||||||| |||||||| || ||||||||||||||||||||||| |||||
Sbjct 828 GTACACTGATCGCGGCATAGTTCTTGGTGATTGTGACAAGGATTCTTACAATTCTCCAGC 887
Query 864 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 947
Query 924 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 1007
Query 984 GGCTGCATTGGCAATTAACAGCGGTGTGCTCGCCGAAATGGAGATTCCCGACCCTTACTT 1043
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1008 GGCTGCATTGGCAATTAACAGTGGCGTGCTTGCCGAAATGGAGATTCCCGACCCTTACTT 1067
Query 1044 GGAGACTTTGCCCAAGAGCGGAAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1103
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GGAGACTTTGCCCAAGAGCGGGAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1127
Query 1104 TGCAAACAAGTTCTCTCCCGAATGCCTCCTAGACTGTCTTGATCTCTCATCGGAGCATCA 1163
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1128 TGCAAACAAGTTCTCTCCCGAATGCCTCCTGGACTGTCTTGATCTCTCATCGGAACATCA 1187
Query 1164 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCACGTTTGGAGACAGAAGAATGG 1223
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1188 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCATGTTTGGAGACAAAAGAATGG 1247
Query 1224 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCATGGGGTGGCAAGGTTAAAGG 1283
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCTTGGGGTGGCAAGGTTAAAGG 1307
Query 1284 CCTTGTTAATGACACCGAAAGAAATGATTTCCTAGTGCAGAGAGCCGAGACCCTCTTGCA 1343
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1308 CCTTGTTAATGACAACGAAAGAAATGATTTCCTTGTGCAGAGAGCCGAGACCCTCTTGCA 1367
Query 1344 GAGTCTTAGGATCCGTTTTCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1403
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAGTCTCAGGATCCGTTTCCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1427
Query 1404 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCGAGGGTGATGGAGAGCAT 1463
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1428 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCTAGGGTGATGGAGAGCAT 1487
Query 1464 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1547
Query 1524 ATCCATCTCTGTCACGGAAACGCTATCCCTATTCAGCATCAATGGACTCAACGGTCAGAA 1583
||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1548 ATCCATCTCTGTCACAGAATCGCTATCCCTATTCAGCATCAATGGACTCAACCCTCAAAA 1607
Query 1584 AGCGTTCTCTGTGCAGAGCTCTCCGCATGGTTCACCATTTGCAACGCCTTCCCTAAGTGT 1643
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1608 AGCGTTCTCTGTGCAGAGCTCTCCGCACGGTTCACCATTTGCAACGCCTGCCCTAAGTGT 1667
Query 1644 AGCATCGAGGAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1703
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGCATCAAGAAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1727
Query 1704 AGAGAAGGGAATAATGGGGGAAACAGAGAAAGCATGGTCGTATGCGGGGAATCTGAGTTC 1763
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1728 AGAGAAGGGAATAGTGGGAGAAACAGAGAAAGCATGGTCGTATGCAGGGAATCTGAGTTC 1787
Query 1764 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGGTTGAAAATAGAAGAATGTAAA 1823
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1788 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGATTGAAAATAGAAGAATGTAAA 1847
Query 1824 TCAATGGTTGTAGAGACTGTAGTTGTTTGTTGTTAGTCTGACTACGAAGA-GTATTATTA 1882
|||||||||||||||||||||||||||| ||||| ||||||||||||||| | | ||
Sbjct 1848 TCAATGGTTGTAGAGACTGTAGTTGTTTCTTGTTTGTCTGACTACGAAGACG-A--ATG- 1903
Query 1883 TGGTAATAGCAACAAGAATGTTAT 1906
||||||||||||||||||||||||
Sbjct 1904 TGGTAATAGCAACAAGAATGTTAT 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94377024600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5