BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490606
Length=4366
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38440.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 5986 0.0
> AT4G38440.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 12 growth stages;
CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein
1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated
protein 1, N-terminal (InterPro:IPR013930); Has 276
Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria
- 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses
- 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17989067-17994723
FORWARD LENGTH=4620
Length=4620
Score = 5986 bits (3241), Expect = 0.0
Identities = 3668/3872 (95%), Gaps = 38/3872 (1%)
Strand=Plus/Plus
Query 521 TTCTCCTCCCCTAGCTGTTTCCAATGGACTTGGGACTAGACAGGCGTCTTCCTCTCTTGA 580
||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||
Sbjct 612 TTCTCCTCCCCTAGCTGTTTCGAATGGACTTGGGACTCGACACGCGTCTTCGTCTCTTGA 671
Query 581 GAGTGATATTGATGTTGAGAACCATGCAAGGTTGCAGACAATGTCCCCCGAAGAGATTGC 640
|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 672 AAGTGATATTGATGTTGAGAACCATGCAAAGTTGCAGACAATGTCACCCGACGAGATTGC 731
Query 641 TGAGGCACAGGCCGAGTTATTGGACAAGATGGATCCTGCACTACTCTCCATTTTGAAGAA 700
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGAGGCTCAGGCTGAGTTATTGGACAAGATGGATCCTGCACTACTCTCCATTTTGAAGAA 791
Query 701 ACGAGGTGAGGCAAAATTGAAGAAGCGAAAGCATTCAGTACAGGGGGTTTCCATTACCCA 760
|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |
Sbjct 792 ACGAGGTGAGGCAAAATTGAAGAAGCGAAAGCATTCTGTGCAGGGGGTTTCCATCACCGA 851
Query 761 TGAGACATCAAAGAATTCAAGAACTGACGGTCATTTTGTCACTCCTCAAGTGATGGCAAC 820
||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 852 TGAAACAGCAAAGAATTCAAGAACTGAGGGTCATTTTGTCACTCCTAAAGTGATGGCAAT 911
Query 821 ACCAG-AAGAAAAAACTGTGCTGCACAAGTCAGCGATAGCCCAAGGATTTGTGTGGGATA 879
||| | ||||||||| |||| |||| ||| ||| ||||||||||||||| |||||||||
Sbjct 912 ACC-GAAAGAAAAAAGTGTGGTGCAAAAGCCAGGGATAGCCCAAGGATTCGTGTGGGATG 970
Query 880 CATGGACTGAGAGGGTTGAGGCAGCCAGGGACTTGAGATTTTCTTTTGACGGGAATGTTG 939
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 971 CATGGACTGAGAGGGTTGAGGCAGCCAGAGACTTGAGATTTTCTTTTGACGGGAATGTTG 1030
Query 940 TTGAGGATGATGTTCTTGTCTCGCCAGCTGAAACTGGTGGAAAGTGGTCTGGCGTTGAAT 999
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1031 TTGAGGAAGATG---TTGTCTCGCCAGCTGAAACTGGTGGAAAGTGGTCTGGTGTTGAAT 1087
Query 1000 CTGCTGCCGAACGTGACTTCTTGAGAACCGAGGGGGATCCTGGGGCAGCAGGGTACACCA 1059
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1088 CTGCTGCCGAACGTGATTTCTTGAGAACCGAGGGGGATCCTGGGGCCGCAGGTTACACTA 1147
Query 1060 TCAAAGAAGCTATTGCTCTTGCACGAAGTGTGATTCCCGGGCAGAGAAGCCTTGCTTTGC 1119
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1148 TCAAAGAAGCTATTGCTCTTGCACGAAGTGTGATTCCCGGGCAGAGATGTCTTGCTTTGC 1207
Query 1120 ATCTGCTTGCATCTGTACTCGACAAAGCTTTGAACAAACTTTGTCAGAGCAGAATAGGCT 1179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1208 ATCTGCTTGCATCTGTACTCGACAAAGCTTTGAACAAACTTTGTCAAAGCAGAATAGGCT 1267
Query 1180 ACACAAGGGAAGGAAAAGATAAAGCCACCGATTGGGAAGCCATCTGGGCATATGCCCTTG 1239
|| ||||||||| |||||||||| |||| || ||||||||||||||||| ||||||||||
Sbjct 1268 ACGCAAGGGAAGAAAAAGATAAATCCACTGACTGGGAAGCCATCTGGGCTTATGCCCTTG 1327
Query 1240 GACCGGAACCTGAGCTTGTCTTAGCATTGAGGATGGCTCTTGATGACAACCATGCCTCTG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GACCGGAACCTGAGCTTGTCTTAGCATTGAGGATGGCTCTTGATGACAACCATGCCTCTG 1387
Query 1300 TTGTTCTAGCATGTGTAAAAGTGATTCAGTGTCTACTGAGCTGTTCTCTTAACGAGAACT 1359
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1388 TTGTTATAGCATGTGTAAAAGTGATTCAGTGTCTACTGAGCTGTTCTCTTAACGAGAATT 1447
Query 1360 TCTTTGATATTTTGGAGAACATGGGACCACACGGGAAGGATATCTTCACGGCCTCGGTGT 1419
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1448 TCTTTAATATTCTGGAGAACATGGGACCACACGGGAAAGATATCTTCACGGCCTCGGTGT 1507
Query 1420 TCAGGAGTAAGCCGGAAATTGATCTTGGCTTCCTCCGTGGTTGCTACTGGAAGTACAGTG 1479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1508 TCAGGAGTAAGCCGGAAATTGATCTTGGCTTCCTCCGTGGTTGCTACTGGAAGTACAGCG 1567
Query 1480 CTAAACCCTCCAATATTGTTCCTTTCCGTGAAGAAATCATGGATGAAGGCACAGAAGATA 1539
|||||||||||||||||||| | ||||||||||||||| ||||||| || ||||||||||
Sbjct 1568 CTAAACCCTCCAATATTGTTGCGTTCCGTGAAGAAATCTTGGATGACGGGACAGAAGATA 1627
Query 1540 CGGATACTATTCAGAAAGATGTTTTTGTAGCCGGACAAGATGTTGCTGCTGGTCTTGTCA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1628 CGGATACTATTCAGAAAGATGTTTTTGTAGCCGGACAAGATGTTGCTGCTGGTCTCGTCA 1687
Query 1600 GAATGGATATCCTTCCAAGAATTTATCATCTTCTGGAGACAGAACCAACAGCAGCGCTTG 1659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1688 GAATGGATATCCTTCCAAGAATTTATCACCTTCTGGAGACAGAACCAACAGCAGCGCTTG 1747
Query 1660 AGGACAGCATAATCTCTATTACTATTGCGATAGCAAGGCATTCTCCAAAATGCACAACTG 1719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 AGGACAGCATAATCTCTGTTACTATTGCGATAGCAAGGCATTCTCCAAAATGCACAACTG 1807
Query 1720 CAATCTTGAAGTATCCCAAATTTGTGCAAACAATTGTGAAGAGCTTCAAATTGAACAGAA 1779
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||
Sbjct 1808 CAATCTTGAAGTATCCCAAATTTGTGCAAACAATTGTGAAAAGATTCCAATTGAACAAAA 1867
Query 1780 GAATGGACGTTCTTCCTTCTCAGATCAATTCTGTCCGCCTCTTAAAGGTGTTGGCCCGGT 1839
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1868 GAATGGACGTTCTTTCTTCTCAGATCAACTCTGTCCGCCTCTTAAAGGTGTTGGCCCGGT 1927
Query 1840 ATGATCAAAGTACTTGCATGGAATTTGTGAAGAACGGGACTTTCAATGCGGTCACGTGGC 1899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1928 ATGATCAAAGTACTTGCATGGAATTTGTGAAGAATGGGACTTTCAATGCGGTCACATGGC 1987
Query 1900 ATTTGTTTCAGTTCACCTCCTCTCTTGACTCATGGGTGAAGCTAGGGAAGCAGAACTGCA 1959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 ATTTGTTTCAGTTCACCTCATCTCTTGACTCATGGGTGAAGCTAGGGAAGCAGAACTGCA 2047
Query 1960 AGCTTTCATCTACTTTGATGGTTGAACAGCTCCGGTTTTGGAAGGTCTGTATCCATAGTG 2019
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 AGCTTTCATCTACCTTGATGGTTGAACAGCTCCGGTTTTGGAAGGTCTGTATCCATAGTG 2107
Query 2020 GCTGTTGCGTAGCTCGCTTCCCAGAGCTATTCCCAGCTCTGTGTCTGTGGTTGAGTTGTC 2079
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 GCTGTTGCGTATCTCGCTTCCCAGAGCTATTCCCAGCTCTGTGTCTGTGGTTGAGTTGTC 2167
Query 2080 CATCATTTGAAAAGCTCAGGGAGAAAAATCTCATCAACGAGTTTACTTCTGTGTCAAAGG 2139
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2168 CATCATTCGAAAAGCTCAGGGAGAAAAATCTCATCAGCGAGTTTACTTCTGTGTCAAACG 2227
Query 2140 AGGCCTACCTGGTCCTTGAGGCTTTTGCCGAGACACTTCCTAATATGTACTCACAAAACA 2199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2228 AGGCCTACCTGGTCCTTGAGGCTTTTGCCGAGACACTTCCTAATATGTACTCACAAAACA 2287
Query 2200 CTCCACGGAACGAATCTGGGACATGGGACTGGAGTTATGTTAGCCCTATGATTGATTCAG 2259
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2288 TTCCACGGAATGAATCTGGGACATGGGACTGGAGCTATGTTAGCCCTATGATTGATTCAG 2347
Query 2260 CACTGAGCTGGATAACATTGGCCCCTCAATTACTCGAA-TGGGAGAAAGGAATCGAAAGT 2318
||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 2348 CACTGAGTTGGATAACATTGGCCCCGCAATTACTC-AAGTGGGAGAAAGGAATCGAAAGT 2406
Query 2319 GTCTCTGTATCCACTACTTCTCTGTTGTGGTTGTATTCAGGTGTCATGCGTACAATTTCC 2378
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2407 GTCTCTGTATCAACTACTACTCTGTTGTGGTTGTATTCAGGTGTCATGCGTACAATTTCC 2466
Query 2379 AAAGTCCTTGAGAAAATCTCTGCCGAGGGAGAGGAAGAACCTCTACCATGGCTGCCGGAG 2438
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2467 AAAGTCCTTGAGAAAATCTCTGCGGAGGGAGAGGAAGAACCTCTACCATGGCTACCGGAG 2526
Query 2439 TTTGTTCCAAAGATTGGCCTTGCCATTATCAAGCACAAGCTTCTTAGTTTTTCTGTTGCA 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 TTTGTTCCAAAGATTGGCCTTGCCATTATCAAGCACAAGCTTCTTAGTTTTTCTGTTGCA 2586
Query 2499 GACGTAAGTAGGCTTGGAAATGACTCCTCCAGGTGTTCCTCTTTTATGGAATTTTTGTGT 2558
|||||||||||| ||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct 2587 GACGTAAGTAGGTTTGGAAAAGACTCTTCCAGGTGTTCCTCTTTTATGGAGTATTTGTGT 2646
Query 2559 TTTCTGAGAGAACGATCTCAAGATGACGAACTAGCATTAGCTTCTGTGAGTTGTCTTCAT 2618
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2647 TTTCTAAGAGAACGATCTCAAGATGACGAACTAGCATTAGCTTCTGTGAATTGTCTTCAT 2706
Query 2619 GGGTTAACACAGACTATCGTGTCCATCCAAAATCTGATAGAATCTGCTAGATCGAAGATG 2678
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2707 GGGTTAACACGGACTATCGTGTCCATCCAAAATCTGATAGAATCTGCTAGATCCAAGATG 2766
Query 2679 AAAACTTCTCATGAGGAAAGTATTTCCACTAGAGATGAATCTGTGCTTGCAAAAGGAATA 2738
||| || | ||| ||| ||||||||||||| |||||||||||||||||||||| || |||
Sbjct 2767 AAAGCTCCGCATCAGGTAAGTATTTCCACTGGAGATGAATCTGTGCTTGCAAATGGGATA 2826
Query 2739 CTGGCAGAGTCTCTGGCTGACCTAACATCTGTGTCGAGCTCTTTTAGAGATTCTGTTTCA 2798
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2827 CTGGCAGAGTCTCTGGCTGAGCTAACATCTGTGTCGTGCTCTTTTAGAGATTCTGTTTCA 2886
Query 2799 TCAGAATGGCCCATCGTGCAATCCATTGAGCTACATAAACGAGGCGGATTGGCTCCCGGC 2858
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2887 TCAGAATGGCCCATCGTGCAATCAATTGAGCTACATAAACGAGGCGGATTGGCCCCCGGC 2946
Query 2859 GTTGGACTTGGTTGGGGAGCTAGCGGTGGTGGGTTTTGGTCAACCAGAGTTCTGTTGGCA 2918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947 GTTGGACTTGGTTGGGGAGCTAGCGGTGGTGGGTTTTGGTCAACCAGAGTTCTGTTGGCA 3006
Query 2919 CAGGCCGATGCCGATCTTCTGAGTCTCTTTCTTAACATCTCTCTGATG-GACTCGCAGAA 2977
||||| | ||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 3007 CAGGCTGGTGCCGGTCTTCTGAGTCTCTTTCTTAACATCTCTCTGA-GCGACTCGCAGAA 3065
Query 2978 TGATCAGGGATCTGTTGGCTTAATAGATAAAATGAACTCCGCTTTAGCTATGTGCTTGAT 3037
||||||||||||||||||||| || |||||| | |||||||||||||||||||| |||||
Sbjct 3066 TGATCAGGGATCTGTTGGCTTTATGGATAAAGTAAACTCCGCTTTAGCTATGTGTTTGAT 3125
Query 3038 TGCAGGTCCAAGGGATTATTTACTCGTGGAAAGAGCCTTTGAATATGTCCTTAGACCGCA 3097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3126 TGCAGGTCCAAGGGATTATTTACTCGTGGAAAGAGCCTTTGAATATGTCCTTAGACCGCA 3185
Query 3098 TGCTTTAGAGCACCTGGCCTGCTGTATCAAGTCAAACaaaaaaaaCATATCGTTTGAATG 3157
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3186 TGCTTTAGAACACCTGGCCTGCTGTATCAAGTCAAACAAAAAAAACATATCGTTTGAATG 3245
Query 3158 GGAATGCAGCGAAGGGGACTATCATCGTATGAGCAGTATACTTGCTTCTCACTTCAGACA 3217
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3246 GGAATGCAGCGAAGGGGACTATCATCGTATGAGCAGTATGCTTGCTTCTCACTTCAGACA 3305
Query 3218 TAGATGGTTACAGCCAAAGGGAAAATCAAAAGCCGAGAAAGGGGTCAGTGGGGTAAGGAA 3277
|||||||||||||| |||||||| ||| | ||||||| ||||||||||||||||||||||
Sbjct 3306 TAGATGGTTACAGCAAAAGGGAAGATCGATAGCCGAGGAAGGGGTCAGTGGGGTAAGGAA 3365
Query 3278 GGGCACAGTTGGTCTGGAGACTATTCATGAGGACGGTGAAATGCCAAATTGTTCAACTCA 3337
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 3366 GGGCACAGTTGGTCTGGAGACTATTCATGAGGACGGTGAAATGTCAAATAGTTCAACTCA 3425
Query 3338 GTATAAACAATCAGACTCCTCGACCATAGAGTGGGCTCACCAGAGAATGCCCCTACCTCC 3397
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3426 GGATAAAAAATCAGACTCCTCGACCATAGAGTGGGCTCACCAGAGAATGCCCCTACCTCC 3485
Query 3398 ACACTGGTTTCTCAGCGCCATCTCAGCAGTCCACAGTGGAAAAACCTCAACAGGGCCACC 3457
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3486 ACACTGGTTTCTCAGCGCCATCTCAGCAGTCCACAGTGGTAAAACCTCAACAGGGCCACC 3545
Query 3458 AGAATCCACGGAGTTGCTTGAAGTAT-CAAAAGCTGGAGTTTTCTTTCTTGCAGGACTTG 3516
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 3546 AGAATCCACAGAGTTGCTTGAAGT-TGCAAAAGCTGGAGTTTTCTTTCTTGCAGGACTTG 3604
Query 3517 AGTCATCGTCTGGTTTTGGATCGCTTACGTCTCCTGTTGTGAGTGTGCCGTTGGTTTGGA 3576
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 3605 AGTCATCGTCTGGTTTTGGATCGCTTCCCTCTCCTGTTGTGAGTGTACCGTTGGTTTGGA 3664
Query 3577 AGTTTCACGCTTTGTCTACCGTATTGCTTGTTGGAATGGACATCATCGAAGACAAGAACA 3636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3665 AGTTTCACGCTTTGTCTACCGTATTGCTTGTTGGAATGGACATCATCGAAGACAAGAACA 3724
Query 3637 CTAGGAACTTGTACAATTTTCTGCAGGAGCTCTATGGGCAGTATCTTGATGAAGCGAGAC 3696
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 3725 CTAGGAACTTGTACAATTATCTGCAGGAGCTTTATGGGCAGTTTCTTGATGAAGCGAGAC 3784
Query 3697 TAAATCACCGTGACATTGAGCTCCTGAGGTTCAAGTCAGAGATTCACGAGAACTACTCTA 3756
||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 3785 TAAATCACCGTGACACTGAGCTTCTGAGGTTCAAGTCAGACATTCATGAGAACTACTCTA 3844
Query 3757 CTTTTATGGAGATGGTCGTGGAGCAGTATGCTGCGGTGTCATATGGTGATGTAGTATATG 3816
||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3845 CTTTTCTGGAGATGGTGGTGGAGCAGTATGCTGCGGTGTCATATGGTGATGTAGTGTATG 3904
Query 3817 GGCGACAGGTCTCGATTTACCTGCATCAATGTGTGGAACACTCTGTTCGGCTTTCGGCAT 3876
| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3905 GCCGGCAGGTCTCGGTTTACCTGCATCAATGCGTGGAACACTCTGTTCGGCTTTCGGCAT 3964
Query 3877 GGACGGTGCTCTCCAATGCCCGTGTTCTCGAGCTTCTACCGAGTCTAGACAAGTGCTTGG 3936
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3965 GGACAGTGCTCTCCAATGCCCGTGTTCTCGAGCTTCTGCCGAGTCTAGACAAGTGCTTGG 4024
Query 3937 GAGAAGCGGATGGTTACCTTGAACCGGTTGAGGAAAATGAGGCAGTCATTGAGGCCTATC 3996
||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||| |
Sbjct 4025 GAGAAGCGGATGGTTACCTCGAACCTGTTGAGGAAAATGAGGCCGTCCTTGAGGCCTACC 4084
Query 3997 TGAAGTCATGGACTTGTGGAGCATTGGACAGAGCTGCGACGCGTGGATCAATAGCCTATA 4056
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 4085 TGAAGTCATGGACTTGTGGGGCATTGGACAGAGCTGCGACGCGTGGATCAGTAGCCTATA 4144
Query 4057 CGCTGGTTGTGCATCACTTTTCATCATTAGTCTTGTGCAACCAAGCCAAGGATAAAGTAT 4116
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 4145 CGCTGGTTGTGCATCACTTTTCATCTTTAGTCTTTTGCAACCAAGCCAAGGATAAAGTAT 4204
Query 4117 CCCTGCGGAATAAGATTGTTAAGACTCTTGTCAGAGATTTATCCAGAAAGAGGCATCGTG 4176
||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||
Sbjct 4205 CCCTGCGGAATAAGATTGTCAAGACTCTTGTCAGGGATTTATCAAGAAAGCGGCATCGTG 4264
Query 4177 AGGGGATGATGCTAGATCTCCTGAGGTATA-GTAAAGGGTCTGAGAACGCCATGGAAGAA 4235
||||||||||| ||||||||||| |||||| | |||||||||| ||||||||||||||||
Sbjct 4265 AGGGGATGATGTTAGATCTCCTGCGGTATAAG-AAAGGGTCTGCGAACGCCATGGAAGAA 4323
Query 4236 GA-G--A-A--A----AGA-AT-G----GA--GGCG-TG--GAAAGAGTGTTGCGAAGGG 4274
|| | | | | ||| | | || || | || ||||||| |||||||||||
Sbjct 4324 GAAGTGATAGCAGCGGAGACAGAGAAAAGAATGGAGGTGTTGAAAGAGGGTTGCGAAGGG 4383
Query 4275 AACTCGGCCCTCCTCTCGGAACTGGAGAAGCTCAAATTGGCCGCTCTCTGTGGAAGAAGG 4334
||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 4384 AACTCCACCCTCCTCTTGGAACTGGAGAAGCTGAAATCAGCCGCTCTCTGTGGAAGAAGG 4443
Query 4335 TGAAAACCTGAGAGAGTGAGAGGAAAGAAAGT 4366
|||| | |||||| ||||||||||||||||
Sbjct 4444 TGAA--C--GAGAGAATGAGAGGAAAGAAAGT 4471
Score = 658 bits (356), Expect = 0.0
Identities = 472/526 (90%), Gaps = 16/526 (3%)
Strand=Plus/Plus
Query 1 GAGTGATGGAGCAAAGTAGCGGGAGACTCATCAATCCGGAACAGGCC-AACAACGTCTTG 59
|||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 44 GAGTGATGGAGCAAAGTAGCGGGAGA---GTCAATCCGGAACA-GCCGAACAACGTCTTG 99
Query 60 GGGAGGCTTGTGGGGAGCATCGTGGAGAAAGGAATATCGGAGAATAAGCCGCCAAACAAG 119
| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 100 GCGAGCCTTGTCGGGAGCATCGTGGAGAAAGGAATATCGGAGAATAAGCCTCCAAGCAAG 159
Query 120 CCGCTTCCCCCAAGACCCTCCCTTCTGTCCTTCCCCGTCGCTCGTCATCGTTCTCACGGA 179
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 160 CCGCTTCCCCCAAGGCCCTCCCTTCTTTCCTTCCCCGTCGCTCGTCATCGTTCTCACGGA 219
Query 180 CCCCAAGGGGTTCCTGTGGGAAGCAGCATTGCACAACCTAAAGATAACGATGAGgaagaa 239
||||| || |||||||||||||||||| ||||||||||| ||| || |||| || |
Sbjct 220 CCCCATTTGGCTCCTGTGGGAAGCAGCATAGCACAACCTAAGGATTACAATGACGATCAG 279
Query 240 gaagaagaagaagaagaagaaCGTTTCATGAATGCAGACTCCGTTTCTGCTTTTGCTAAA 299
||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 280 GAAGAAGAAGAAGCAGAAGAACGTTTCATGAATGCAGACTCCATTGCTGCTTTTGCTAAA 339
Query 300 CCGCTTCAAAGAAAGGAGAAGAAAGACATGGATCTCCGGAGGTGGAAAGATATGCTCTCT 359
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 340 CCGCTTCAAAGAAAAGAGAAGAAAGACATGGACCTCGGGAGGTGGAAAGATATGGTCTCT 399
Query 360 AGGGATGAGCCTGCATCCACACATGGCCCTCAGCAATCAAGGAGAGTTAAGATCATTGAA 419
||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 400 GGGGATGATCCTGCATCCACACATGTCCCTCAGCAATCAAGGAAACTTAAGATCATTGAA 459
Query 420 ACGAGGCC-CCTCTCTGTTGCTTCAGCCGATGCGGCCGCTACATCCAGCAACACTTTACT 478
||||| || || || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 460 ACGAGACCGCC-CTATGTTGCTTCAGCCGATGCGGCCACTACATCCAGCAACACTTTACT 518
Query 479 GGCTCAAAAACCTGCCAGGGCATCATACCAGAGAGACATTGTTTCT 524
|||| |||||||||||| |||||||||| ||||||||
Sbjct 519 GGCT---------GCCAGGGCATCAGACCAGAGAGAGTTTGTTTCT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 217674365677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5