BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490608
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38480.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2087 0.0
> AT4G38480.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:18003916-18006140 FORWARD LENGTH=1595
Length=1595
Score = 2087 bits (1130), Expect = 0.0
Identities = 1291/1369 (94%), Gaps = 10/1369 (1%)
Strand=Plus/Plus
Query 1 CTCGATCTGGTGGGGACGATGAGTGGACGGCCGGCGAAAAGGCCGAGGATCGACCATTCC 60
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 24 CTCGATCTGGTGGGGACGATGAGTGGAAGGCCGGCGAAAAGGCCGAGGACCGACCATTCC 83
Query 61 GTGGTGAATGTCTGGGAAAGGGAGGTCGGTCTCTTGCCCAATCGCAGTTTCTCCAACCGT 120
|| ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 84 GTCGTGAATGTCTGGGAAAGGGAGCTGGGTCTCTTACCCAATCGCAGTTTCTCAAACCGT 143
Query 121 TTTTCAGCCTCCGAGGATCTATTGCGCCGTCTCGGACTTCACAAGAAGCTCGACAAGCAT 180
|||||||| ||||||||||||||||| ||||| |||||| |||||||||| || ||||||
Sbjct 144 TTTTCAGCATCCGAGGATCTATTGCGGCGTCTTGGACTTGACAAGAAGCTTGATAAGCAT 203
Query 181 AAGGGTTGTGTAAACTCAGTCAGTTTCAATGCAGATGGAGATCTCTTGCTCTCTGCTTCT 240
||||| ||||||||| |||| ||||||||||| ||||||||| ||||||| |||| ||||
Sbjct 204 AAGGGATGTGTAAACACAGTGAGTTTCAATGCTGATGGAGATATCTTGCTTTCTGGTTCT 263
Query 241 GACGACAAACAAGTTATTCTTTGGGACTGGGAGACTGCTTCTGTCAAACTCTCTTTCGAT 300
|| |||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 264 GATGACAGACAAGTTATTCTTTGGGATTGGCAGACTGCTTCTGTCAAACTCTCCTTCGAT 323
Query 301 TCCGGCCACTTCAATAATGTATTT-CAAGCCAAATTTATGCCTTTCTCTGACGATCGTAG 359
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 324 TCCGGCCACTTCAATAATAT-TTTCCAAGCCAAATTTATGCCTTTCTCTGACGATCGTAC 382
Query 360 CATAGTCACATCTGCTGCTGATAAGCAGGTCCGCTATTCCAAAATTCTTGAATCTGGACA 419
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 383 CATTGTCACATCTGCTGCTGATAAGCAGGTCCGCTATTCCAAGATTCTTGAATCTGGACA 442
Query 420 AGTAGAGACTTCTTTGTTGGGTAAACATCAAGGACCCGTCCACAAGTTGGCTGTTGAGCC 479
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 443 GGTAGAGACTTCTTTGTTGGGTAAGCATCAAGGACCCGTCCACAAATTGGCTGTTGAGCC 502
Query 480 TGGAAGTCCCTTCTCATTCTATACTTGTGGTGAGGATGGGGCTGTAAAGCATTTTGATCT 539
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 503 TGGAAGTCCTTTCTCATTCTATACTTGTGGTGAGGATGGGGCTGTCAAGCATTTTGATCT 562
Query 540 TAGGACTCGGGTGGCTACAAATCTTTTCACTTGTAAAGAAGCAAAGTTCAATTTAGTTGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TAGGACTCGGGTGGCTACAAATCTTTTCACTTGTAAAGAAGCAAAGTTCAATTTAGTTGT 622
Query 600 CTACTTGCATGCAATTGCAGTTGATCCGAGGAACCCTGGTCTTCTTGCGGTGGCTGGAAT 659
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 623 CTACTTGCATGCAATTGCAGTTGATCCTAGGAACCCTGGTCTTCTTGCCGTGGCTGGAAT 682
Query 660 GGATGAGTATGCTCGTCTCTATGATATTCGCAGCTATCGCTCAGAGGGTTGGTATAATTT 719
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 683 GGATGAGTATGCTCGTGTCTATGATATTCGTAGCTATCGCTCCGAGGGTTGGTATAATTT 742
Query 720 TACCCAACCCGTAGACCACTTTTGTCCTGGCCATTTGATTGGAAATGACCATGTAGGAAT 779
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 743 TACCCAACCCATAGACCACTTTTGTCCTGGCCATTTGATTGGAGATGACCATGTAGGAAT 802
Query 780 TACAGGTCTGGCATTCTCAGATCAAAGTGAGCTCCTTGCTTCATATAGTGACGAGTTCAT 839
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 803 AACAGGTCTGGCTTTCTCGGATCAAAGTGAGCTCCTTGCTTCGTATAGTGACGAGTTCAT 862
Query 840 CTATCTTTTCACCCCTGATATGGGGCTAGGCCCAGCCCCATATCCTTCTTCAACTAAGAC 899
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 863 CTATCTTTTCACCCCTGATATGGGGCTTGGCCCAACCCCATATCCATCTTCAACTAAGAC 922
Query 900 TGAGGAGAGGATGACGCCTCAGGTTTATAAAGAGCACAAGAACCGTGAAACAGTCAAAGG 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 923 TGAGGAGAGGATGACGCCTCAGGTTTATAAAGAGCACACGAACCGTGAAACAGTCAAAGG 982
Query 960 TGTCAACTTTTTTGGACCCAAGTGTGAGTATGTGGTAAGTGGTTCTGACTGTGGCCGAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 983 TGTCAACTTTTTTGGACCCAAGTGTGAGTATGTGGTAAGTGGTTCTGACTGCGGCCGAAT 1042
Query 1020 ATTCATCTGGAGGAAGAAAGACGGAGAGCTCCTCCGTGCCATGGAAGCAGACAAACATGT 1079
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1043 ATTCATCTGGAGGAAGAAAGACGGAGAGCTTCTCCGTGCCATGGAAGCAGACAGACATGT 1102
Query 1080 TGTCAACTGTATAGAGTCTCATCCTCACATGCCACTGATGTGTAGCAGTGGAATAGATAC 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TGTCAATTGTATAGAGTCTCATCCTCACATGCCACTGATGTGTAGCAGTGGAATAGATAC 1162
Query 1140 TGATGTCAAAATATGGACTCCTGGAGGAACCGAGAAACCTGTGTCGCCAGCAAATGCAAA 1199
|||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1163 TGATATCAAAATATGGACTCCTGGAGGAACCGAGAAACCTCTGTCGCCAGGAAATGCGAA 1222
Query 1200 ACAGGCTTCGTGTTTTGGTAACCTGCGATGGTTCGACGGATATAATGTGGATGGTGATGA 1259
|||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 1223 ACAGGCTTCGGGTTTTGGTAACCCACGATGGTTCGACGGATATTATGTGGATGACGATGA 1282
Query 1260 TGATTCTGACGATGAATCTAGTGAAGAGAGTTCAGATGATGATGATAGTGCGGAAGAGGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1283 TGATTCTGACGATGAATCTAGTGAAGAGAGTTCAGATGATGATGATAGTTCGGAAGAGGA 1342
Query 1320 AGAGGAAGAGAATGGTGAAGTTGAAGTtgatgatgatgatg-atgatga 1367
| | | || | |||||||||||| ||||| ||| | || | |||||||
Sbjct 1343 -G-G-A-GA-A-TGGTGAAGTTGATGTTGA-GATTACGAAGGATGATGA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5