BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490609
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38490.1 | Symbols: | unknown protein; Has 30201 Blast hits... 728 0.0
> AT4G38490.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18006288-18007372
FORWARD LENGTH=728
Length=728
Score = 728 bits (394), Expect = 0.0
Identities = 575/654 (88%), Gaps = 45/654 (7%)
Strand=Plus/Plus
Query 1 AAAAAGGCCCATAGACT-ATCGAAGGCCTTTGACATCTGCGACTGCGCGAGGTCAGGCTT 59
||||||||||||||| | ||||||||||||||| ||||||||| | ||||| ||| ||||
Sbjct 12 AAAAAGGCCCATAGA-TCATCGAAGGCCTTTGATATCTGCGAC-G-GCGAGATCA-GCTT 67
Query 60 CGTCTTCCTCCAACGCTTGCTCGCTTGAGGGAGGATGGTGGTTTCTCCGGGGCTGCTCTC 119
||||||||||||| | ||||| || |||||||||||||||||||||||||||||||||
Sbjct 68 CGTCTTCCTCCAA--C--GCTCGATTTAGGGAGGATGGTGGTTTCTCCGGGGCTGCTCTC 123
Query 120 AAATGTTTCAGGCTTAATCCGATTGGCTCCGTCACACCGGATTCAAATACGCGATGGGTT 179
|| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 124 AACTGTTTCAGGCGTAATCCGATTGGCTCCGTCACACCGGATTCTAAGACGCGATGGGTT 183
Query 180 CGGACCCAGTTGCTTCAAGTTTTCTGGGGATCCT-AGTATCAATGGGAGAGTCAGTCATA 238
|||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 184 CGGACCCATTTGCTTCAAGTTTTCTGGGGAT-TTGAGTATCAATGGGAGAGTCAGTCATA 242
Query 239 AACATGTGCGTGGCTA-TGGCACGGTGGTATCTGTA-G----G-TC---AAAGTTGGA-- 286
||||||||||||| | ||||||||||| ||||||| | | || |||||||||
Sbjct 243 AACATGTGCGTGG-AAGTGGCACGGTGGGATCTGTAGGTTCCGCTCGTGAAAGTTGGAGC 301
Query 287 ----AT---AAGCTACCCGAAGAAGAGCCCTTATGGCTCAGCCTTCTTAGAGACATCGTC 339
|| ||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 302 TCTCATAAGAAGCTTCCCGAAGAAGAGCCCTTATGGCTGAGTCTTCTTAGAGACATGGTC 361
Query 340 TGGAGCACAAGATCTCTCTTGTCTTTCATGGCTGAGCAACCGAGTCAGCTGAAGTACATA 399
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 362 TGGAGCACGAGATCTCTCTTGTCTTTCATGGCTGAGCAACCAAGTCAGCTGAAATACATA 421
Query 400 GAGTGGCCAAGTTTTACAAGCACGCTCAAGACTGCGACACTGAGTCTGTGTCTGGTAGCC 459
|||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 422 GAGTGGCCAACTTTTGCAAGCACGCTAAAGACTGCTACACTGAGTCTGTGTCTGGTAGCT 481
Query 460 GTCTTCATTGTTGGGCTATCGTCGGTGGACGCTGCACTTTGTTACATATTGGCGTTGATC 519
|| |||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 482 GTATTCATTGTTGCGCTATCATCGGTGGATGCTGCTCTTTGTTACATATTGGCGTTGATC 541
Query 520 TTGAGGAAAGCCCCATGAGGAAGGAAGGCAACTCCATTATCATGCGTCTCTTGGAG---- 575
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 542 TTGAGGAAAGCCCCATGAGGAAGG----CAACTCCATTATCATTTGTCTCTTGTAGCCTT 597
Query 576 AT-GTTA----AATGTTTTTGATGTAGAAAGAATGCAGGAGGATGTACT-AAAA 623
|| | || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 598 ATTGATAGGTGAATGTTTTTGATGTAGATAGAATGCAGGAGGATGTACTCAAAA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5