BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490610
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38500.1 | Symbols: | Protein of unknown function (DUF616) ... 2761 0.0
> AT4G38500.1 | Symbols: | Protein of unknown function (DUF616)
| chr4:18007756-18010903 FORWARD LENGTH=2372
Length=2372
Score = 2761 bits (1495), Expect = 0.0
Identities = 1679/1765 (95%), Gaps = 23/1765 (1%)
Strand=Plus/Plus
Query 297 TAATAAAGCTGGCCTCTTTCTTTCTGTAGAGATGGTTCTTGAGCGATGATGAGTGACTCT 356
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 622 TAATAAAGCTGGCCTCTTTC-TTC---CGAGATGGTTCTTGAGCGATGATGAGTGACTCT 677
Query 357 CAGCGATCACTTTCTGTGCGATTGAGCCGCCGGGGAGAGAGAATCAATC---A-T-A-AA 410
||||||||||||||||||||||||||||||||||| ||||||| ||||| | | | ||
Sbjct 678 CAGCGATCACTTTCTGTGCGATTGAGCCGCCGGGGTGAGAGAAGCAATCATTACTCACAA 737
Query 411 TCTAAAGATGCTGAGGCTGGCTTCTTCTCTCCCACCAGACTCCATACCGATTACACTTTG 470
||||||||||||| ||||||||||||||||||||||||| | ||| | ||||||||||||
Sbjct 738 TCTAAAGATGCTGTGGCTGGCTTCTTCTCTCCCACCAGATTGCATGCTGATTACACTTTG 797
Query 471 AAAAAGATTTGGAAGGCGGGATTCCTTCGCTTGCTTCTTGTTGGCGGCATTCTCTGGATG 530
||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 798 AAAAAAATTTGGAAGGCAGGCTTCCTTCGCTTGCTTCTTGTTGGCGGCATTGTCTGGATG 857
Query 531 CTACTCATTCTCTTTGCCCTCTTGTTTCATGTTTGGTCCTGTCAATCTTCCCTTTCTTTC 590
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CTACTCATTCTATTTGCCCTCTTGTTTCATGTTTGGTCCTGTCAATCTTCCCTTTCTTTC 917
Query 591 TTCTCAGCTATTTGCAACAAAGAAGGCAGACTCTATGTCATGTTGGACACTATTGGATTT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TTCTCAGCTATTTGCAACAAAGAAGGCAGACTCTATGTCATGTTGGACACTATTGGATTT 977
Query 651 GTACCTAAGCCGCAACACCGATGCCCCATTCCAGTAGCCTATGATCCTGATAAGGTGCTC 710
|||||||| || || ||||||||||||||||| || | ||||| |||||||||||||||
Sbjct 978 GTACCTAAACCCCAGCACCGATGCCCCATTCCCGTTGATTATGACCCTGATAAGGTGCTC 1037
Query 711 CTTCCAAGTGAAAAAACCGCAGATACAATTGTCAGAAATTTGACCTACGTCACAGAGGAT 770
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 CTACCAAGTGATAAAACCGCAGATACAATTGTCAGAAATTTGACCTACGTAACAGAGGAT 1097
Query 771 GAATCCTCTAAGTCTCTGTTTCCTCTTTTTGGCGGAAACATAAGCTGGTCTGAACGAGAA 830
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1098 GAATCCTCTAAGTCTCAGTTTCCTCTATTTGGCGGAAACATAAGCTGGTCTGAACGAGAA 1157
Query 831 GAAAGCTTCAAACTGAAACCTGAGATGAAGGTCCATTGCGGATTCATGCCACGTGGTGGG 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GAAAGCTTCAAACTGAAACCTGAGATGAAGGTCCATTGCGGATTCATGCCACGTGGTGGT 1217
Query 891 GCAGAGATGTCATCTCTGGATAAAGAATACGTAAAGAAATGTAGATTCGTTGTTGCAACG 950
|| || |||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 1218 GCTGAAATGTCATCTCTGGATAAAGAATACGTAAAGAAGTGCAGATTTGTTGTTGCCACG 1277
Query 951 GGGATTTTTGATGCATATGATGAACCCCACCAGCCATCAAACATAAGCAAGCGTTCTAAG 1010
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1278 GGGATTTTCGATGCATATGATGAACCCCACCAGCCATCAAACATAAGCAAGCGTTCTATG 1337
Query 1011 AATCTCTTCTGTTTCCTTATGGTGGTAGATGAGGTCTCTCTCGATTTCTTGAGGAAAAAT 1070
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1338 AATCTCTTCTGTTTCCTTATGGTGGTAGATGAGGTCTCTCTCGATTTCTTAAGAAAAAAT 1397
Query 1071 ACCACTGTGAGGAAAGATGTTGAAGGAGGCAAATGGGTTGGCATTTGGCGTCTGATTCTA 1130
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1398 ACTACTGTGAGGAAAGATGTTGAAGGAGGCATATGGGTTGGCATTTGGCGTCTGATTCTA 1457
Query 1131 CTGAAAACTCCTCCATATGATGAACCTAGGAGGAATGGTAAAGTCCCGAAAATCTTAACT 1190
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1458 CTGAAAACTCCTCCATATGATGAGCCTAGGAGGAACGGTAAAGTCCCGAAAATCTTAACT 1517
Query 1191 CACAGGTTATTCCCTGAAGCACAGTACAGCATTTGGATTGATGGGAAAATGGAGCTTATT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 CACAGGTTATTCCCTGAAGCACAGTACAGCATTTGGATTGATGGGAAAATGGAGCTTATT 1577
Query 1251 GTTGATCCCTTGCTTATTCTAGAAAGGTATTTGTGGCGTGGGAAACATACTTTTGCCATT 1310
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 GTTGACCCCTTGCTTATTCTAGAAAGGTATTTGTGGCGTGGGAAACATACTTTTGCCATT 1637
Query 1311 GCCCAACACAAACACCACCGAAACATATATGAGGAAGCTGATGCGTGCAAGAGGAGAAAG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GCCCAACACAAACACCACCGAAACATATATGAGGAAGCTGATGCGTGCAAGAGGAGAAAG 1697
Query 1371 CGATACGCCCGACCTCTGGTTGATCTTCATATGAAAATATATCGATACGAGGGCTTGGAA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CGATACGCCCGACCTCTGGTTGATCTTCATATGAAAATATATCGATACGAGGGCTTGGAA 1757
Query 1431 CCATGGAGCATCAAGAAGAACACTGTTAGTGATGTTCCAGAGGGAGCGGTGATAATAAGA 1490
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1758 CCATGGAGCATCAAGAAGAACACTGTTAGTGATGTTCCAGAGGGAGCTGTGATAATAAGA 1817
Query 1491 GAGCACACTGCAATGAACAATCTGTTCAGCTGCCTGTGGTTCAATGAGGTACACCTGTTA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 GAGCACACTGCAATGAACAATCTGTTCAGCTGCCTGTGGTTCAATGAGGTACACCTGTTA 1877
Query 1551 ACACCGAGGGACCAGCTAAGCTTTGGGTATGTAGTGGACAGACTGAAAGGAGCCTTCAAG 1610
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1878 ACACCGAGGGACCAGCTAAGCTTTGGGTATGTAGTGGACAGACTAAAAGGAGCCTTCAAG 1937
Query 1611 GTGTTCATGTTCCAGAACTGTGAGTACAATTCTCTCTTCGAACTGCACCCTCACATTCGA 1670
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1938 GTGTTCATGTTCCAGAACTGTGAGTATAACTCTCTCTTCGAACTGCACCCTCACATTCGA 1997
Query 1671 GAGCATTCCTCGAAGATCGAGTGGGTCAAGAGCCTTCAGGAACTTAAAGGGAAGGGAGAG 1730
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1998 GAGCATTCCTCGAAGATTGAGTGGGTCAAGAGTCTTCAGGAACTCAAAGGGAAGGGAGAG 2057
Query 1731 AGTTTGAAGGAAAGTCGAGGCGGCTTTGGGCTCTGGACTCCTTACCCTGGGGACCTTGAT 1790
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2058 AGTTTGAAGGAAAGCCGAGGCGGCTTTGGGCTCTGGACTCCTTACCCTGGTGACCTTGAT 2117
Query 1791 TCCGTTGAGCTGCCAAAAGTAGTAAGAACTTCTAAAGCTGGTTGAGACAGTAAACATTAT 1850
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 TCTGTTGAGCTGCCAAAAGTAGTAAGAACTTCTAAAGCTGGTTGAGACAGTAAACATTAT 2177
Query 1851 ACACTAGTTTTTAACTTTTGTTTGATCGCTGTCTGCGGCTTGGATTCAATTCCGAATTTT 1910
|||||||||||||||||| ||||||||||||||| ||| || ||| | |||||||
Sbjct 2178 ACACTAGTTTTTAACTTTCGTTTGATCGCTGTCTTCGG-TT---TTC----C-GAATTTT 2228
Query 1911 CCAATTTATTAGACATACACGTCTTCTGAATTCTATTTGTAGATCGAAGATTCAAATGCA 1970
||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 2229 CCAATTTATCAAACATACACGTCTTTTGAATTCTATTTGTAGATCGAAGAATCAAATGTA 2288
Query 1971 AAACCCAAATTGTTATTaaaaaa-aa-aa-aaGCTGCATTGATATTCGTGATCTGTAATA 2027
|||||||||||||||| |||||| || || |||||||||||| |||||||| | ||||||
Sbjct 2289 AAACCCAAATTGTTATAAAAAAAGAAGAAGAAGCTGCATTGACATTCGTGA-CAGTAATA 2347
Query 2028 AGACAAACAAATGTATATTGTTCTG 2052
|||||||||||||||| ||||||||
Sbjct 2348 AGACAAACAAATGTATGTTGTTCTG 2372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101706304170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5