BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490612
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38510.5 | Symbols: | ATPase, V1 complex, subunit B protein... 2457 0.0
AT1G76030.1 | Symbols: | ATPase, V1 complex, subunit B protein... 1112 0.0
AT2G20910.1 | Symbols: | pseudogene, vacuolar ATP synthase sub... 254 3e-66
> AT4G38510.5 | Symbols: | ATPase, V1 complex, subunit B protein
| chr4:18011117-18015171 REVERSE LENGTH=1707
Length=1707
Score = 2457 bits (1330), Expect = 0.0
Identities = 1465/1527 (96%), Gaps = 21/1527 (1%)
Strand=Plus/Plus
Query 35 ATCTAAAATGGGTGCTGCTGAAAACAACCTTGAAATGGAGGAGGGTACCCTGGAGATCGG 94
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 199 ATCTAAAATGGGTGCTGCTGAAAACAACCTTGAAAT---GGAGGGTACCCTGGAGATCGG 255
Query 95 CATGGAGTATAGAACTGTCTCTGGTGTTGCCGGCCCTCTCGTCATCCTTGAAAAAGTCAA 154
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 256 CATGGAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAA 315
Query 155 GGGCCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGG 214
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GGGGCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGG 375
Query 215 TCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTATTTGAGGGAACATCTGG 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTATTTGAGGGAACATCTGG 435
Query 275 AATTGACAACAAGTACACAACTGTGCAATTTACAGGAGAGGTTTTGAAAACTCCTGTTTC 334
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGGTTTTGAAAACTCCTGTTTC 495
Query 335 TTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAATGGTCCACC 394
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 496 TTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACC 555
Query 395 TATATTGCCCGAGGCATACTTGGATATTTCTGGAAGTTCTATCAATCCCAGTGAGAGAAC 454
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TATATTGCCTGAGGCGTACTTGGATATTTCTGGAAGTTCTATCAATCCCAGTGAGAGAAC 615
Query 455 CTATCCTGAAGAGATGATTCAGACGGGGATATCCACCATTGATGTCATGAACTCTATCGC 514
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 616 CTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGC 675
Query 515 CAGAGGACAGAAGATTCCCCTCTTTTCTGCTGCAGGTCTTCCCCACAATGAAATTGCTGC 574
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 676 CAGAGGACAGAAGATTCCCCTCTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGC 735
Query 575 TCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCGGATAATCTCCTCGA 634
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 736 TCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGA 795
Query 635 GCACCAAGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGAC 694
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGAC 855
Query 695 TGCGCAATTTTTTAAACGTGATTTCGAGGAGAATGGGTCGATGGAGAGAGTGACTCTTTT 754
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 856 TGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTT 915
Query 755 CCTTAACTTGGCAAGTCTCGCAGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCG 814
|||||| | | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 916 CCTTAA-----C---T-T-G--GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCG 963
Query 815 TATTGCTCTTACAACGGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCAT 874
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCAT 1023
Query 875 TCTCACAGACATGAGTTCCTACGCTGATGCTCTTCGTGAGGTCTCTGCTGCCCGTGAAGA 934
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1024 TCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGGTCTCTGCTGCCCGTGAAGA 1083
Query 935 AGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGACTTGGCTACTATATACGA 994
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1084 AGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGACTTGGCTACCATATACGA 1143
Query 995 GAGAGCGGGGCGAATTGAAGGAAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCAT 1054
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCAT 1203
Query 1055 GCCAAACGATGATATCACACATCCCACACCGGATCTGACAGGATACATTACAGAGGGCCA 1114
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1204 GCCAAACGATGATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCA 1263
Query 1115 AATCTATATTGACCGACAACTTCACAATAGACAGATATACCCTCCGATCAATGTCTTGCC 1174
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1264 AATCTATATTGACCGACAACTTCACAATAGACAGATCTACCCTCCGATCAATGTCTTGCC 1323
Query 1175 ATCTCTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTC 1234
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 ATCTCTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTC 1383
Query 1235 TGATGTTTCTAATCAATTGTATGCCAACTACGCTATTGGAAAGGACGTCCAGGCCATGAA 1294
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1384 TGATGTTTCTAATCAATTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAA 1443
Query 1295 AGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGCTATATCTGGAGTTCTTGGA 1354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1444 AGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGCTATATCTTGAGTTCTTGGA 1503
Query 1355 CAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTACGATACCCGGAATATCTTCCAGTC 1414
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1504 TAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTATGATACCCGAAACATCTTCCAGTC 1563
Query 1415 ACTCGACCTGGCATGGACACTCCTGC-GAATCTTCCCCCGTGAGTTGCTTCACCGTATAC 1473
|||||||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||
Sbjct 1564 ACTCGACCTGGCATGGACTCTCCT-CAGAATCTTCCCCCGTGAGTTACTTCACCGTATAC 1622
Query 1474 CGGCGAAAACCCTTGATCAGTTTTACAGCCGCGACACCACCAACTGAAAGA-CATAGTTT 1532
| |||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||
Sbjct 1623 CCGCGAAAACCCTTGATCAGTTTTACAGTCGCGATACCACCAACTGAA-GAACATAGTTT 1681
Query 1533 CTA-TGGCGTTGGTGTGATGATATGTC 1558
||| || | ||||||||||||||||||
Sbjct 1682 CTACTGCC-TTGGTGTGATGATATGTC 1707
> AT1G76030.1 | Symbols: | ATPase, V1 complex, subunit B protein
| chr1:28533798-28537194 FORWARD LENGTH=1900
Length=1900
Score = 1112 bits (602), Expect = 0.0
Identities = 1181/1458 (81%), Gaps = 49/1458 (3%)
Strand=Plus/Plus
Query 76 AGGGTACCCTGGAGATCGGCATGGAGTATAGAACTGTCTCTGGTGTTGCCGGCCC-TCTC 134
|||| || ||||||||||||||||||||||||||||| ||||||||||| || || | |
Sbjct 191 AGGG-ACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCAT-TG 248
Query 135 GTCATCCTTGAAAAAGTCAAGGGCCCTAAA-TACCAAGAAATTGTCAATATCCGTCTTGG 193
||||| ||||| ||||| ||||| || ||| ||||| || ||||| ||||| || ||| |
Sbjct 249 GTCATTCTTGACAAAGTGAAGGGTCC-AAAGTACCAGGAGATTGTTAATATTCG-CTTAG 306
Query 194 G-GATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTC 252
| |||||| | || |||||||||| ||| | ||||||||||| |||||||| ||||| |
Sbjct 307 GAGATGGATCAACGAGACGTGGTCAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGC 366
Query 253 AGGTATTTGAGGGAACATCTGGAATTGACAACAAGTACACAACTGTGCAATTTACAGGAG 312
|||| ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 367 AGGTTTTTGAAGGAACATCTGGAATTGACAACAAGTTTACAACCGTGCAATTCACAGGAG 426
Query 313 AGGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGA 372
||||||||||||| ||||| || ||||| |||||||| ||||| || || |||||||| |
Sbjct 427 AGGTTTTGAAAACACCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAA 486
Query 373 AGCCCATTGACAATGGTCCACCTATAT-TGCCCGAGGCATAC-TTGGATATTTCTGGAAG 430
|||| ||||| ||||| || ||||| | |||| || |||||| ||| ||||||| |||||
Sbjct 487 AGCCGATTGATAATGGCCCTCCTAT-TCTGCCAGAAGCATACCTTG-ATATTTCAGGAAG 544
Query 431 TTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGGATATCCAC 490
||| ||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 545 TTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGAC 604
Query 491 CATTGATGTCATGAACTCTATCGC-CAGAGGACAGAAGATTCCCCTCTTT-TCTGCTGCA 548
||| ||||||||||| || || || | | |||||||||||||| || ||| ||||||||
Sbjct 605 CATCGATGTCATGAATTCCATTGCTC-GTGGACAGAAGATTCCACT-TTTCTCTGCTGCT 662
Query 549 GGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGT 608
|||||||| || |||||||| |||||||||||||| |||||||||||| | || ||||||
Sbjct 663 GGTCTTCCACATAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTAGTCAAGCGT 722
Query 609 TTAGAGAAGTCGGATAATCTCCTCGAGCACCAAG-AGGATGATAACTTCGCCATTGTGTT 667
|| || ||| | | | |||| || ||| | || | || | || || || || ||||||||
Sbjct 723 TTGGAAAAGACTGTTGATCTACTTGAGGATCATGGAG-AGGACAATTTTGCAATTGTGTT 781
Query 668 CGCAGCAATGGGTGTGAACATGGAGACTGCGCAATTTTTTAAACGTGATTTCGAGGAGAA 727
||||| |||||||||||||||||||| || || || || || || ||||| || || ||
Sbjct 782 TGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAA 841
Query 728 TGGGTCGATGGAGAGAGTGACTCTTTTCCTTAACTTGGCAAGTCTCGCAGCAAACGACCC 787
||| || ||||||||||| ||||||||||| ||| |||| | | | |||||
Sbjct 842 TGGATCAATGGAGAGAGTTACTCTTTTCCTGAACCTGGC----C----A--AT--GACCC 889
Query 788 CACTATTGAGCGTATCATCACTCCTCGTATTGCTCTTACAACGGCTGAGTA-CTTGGCAT 846
|| |||||| | |||||||||||||| ||||| || ||||| ||||| || || ||| |
Sbjct 890 AACCATTGAGAGAATCATCACTCCTCGAATTGCCCTCACAACAGCTGAATATCT-GGCTT 948
Query 847 ATGAATGTGGCAAGCATGTCCTTGTCAT-TCTCACAGACATGAGTTCCTACGCTGATGCT 905
|||||||||| || || |||||||| || | | || || |||||||| || |||||||||
Sbjct 949 ATGAATGTGGGAAACACGTCCTTGTTATAT-TGACGGATATGAGTTCTTATGCTGATGCT 1007
Query 906 CTTCGTGAGGTCTCTGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGTTACCCAGGTTAC 965
||||||||||| || |||||||| ||||| || || ||||| ||||| || ||||||||
Sbjct 1008 CTTCGTGAGGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTAT 1067
Query 966 ATGTACACCGA-CTTGGCTACTATATACGAGA-GAGCGGGGCGAATTGAAGGAAGGAAAG 1023
|||||||| || |||| | ||||| || || | | || ||||| || |||||||| ||||
Sbjct 1068 ATGTACACTGATCTTG-CAACTATTTATGA-ACGTGCTGGGCGTATAGAAGGAAGAAAAG 1125
Query 1024 GTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGATATCACACATCCCACAC 1083
|||||||||| |||||||| || | || ||||| || || |||||||| ||||| || |
Sbjct 1126 GTTCCATCACCCAAATTCCAATCCTCACTATGCCCAATGACGATATCACTCATCCAACTC 1185
Query 1084 CGGATCTGACAGGATACATTACAGAGGGCCAAATCTATATTGACCGACAACTTCACAATA 1143
||||||| || || |||||||| || || || || ||||| || | ||||||||||| |
Sbjct 1186 CGGATCTTACTGGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACA 1245
Query 1144 GACAGATATACCCTCCGATCAATGT-CTTGCCATCTCTGTCTCGTCTTA-TGAAGAGTGC 1201
|||||||||| || || ||||| || ||| ||||| || |||||| ||| ||||||||||
Sbjct 1246 GACAGATATATCCACCCATCAACGTGCTT-CCATCCCTTTCTCGT-TTAATGAAGAGTGC 1303
Query 1202 CATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAATTGTATGCCAA 1261
|| || ||||| |||||||| | ||||| |||||||| || || || ||||||| ||
Sbjct 1304 TATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAACCAGCTGTATGCAAA 1363
Query 1262 CTACGCTATTGG-AAAGGACGTCCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTT 1320
|| || || || |||| | || || || |||||||| || |||||||||||||| ||||
Sbjct 1364 TTATGCAATCGGGAAAG-ATGTTCAAGCGATGAAAGCTGTTGTTGGAGAAGAAGCACTTT 1422
Query 1321 CTTCCGAGGATCTGCTATATCTGGAGTTCTTGGACAAGTTCGAGAGGAAGTTTGTGGCT- 1379
|||| |||||| |||| ||||| ||||| ||||| ||||| ||||||||||||||| |
Sbjct 1423 CTTCAGAGGATTTGCTTTATCTAGAGTTTTTGGATAAGTTTGAGAGGAAGTTTGTGA-TG 1481
Query 1380 CAGGGAGCTTACGATACCCGGAATATCTTCCAGTCACTCGACCTGGCATGGACACTCCTG 1439
|| |||||||| ||||| || || ||||||||||| || ||| | || |||||| | ||
Sbjct 1482 CAAGGAGCTTATGATACACGCAACATCTTCCAGTCGCTGGACTTAGCTTGGACATTGCTC 1541
Query 1440 CGAATCTTCCCCCGTGAG-TTGCTTCACCGTATACCGGCGAAA-ACCCTTGATCAGTTTT 1497
|| |||||||| || ||| || ||||| ||||| || || ||| || ||||| || || |
Sbjct 1542 CGTATCTTCCCACGGGAGCTT-CTTCATCGTATCCCTGC-AAAGACACTTGACCAATTCT 1599
Query 1498 ACAGCCGCGACACCACCA 1515
||||||||||| | ||||
Sbjct 1600 ACAGCCGCGACTCAACCA 1617
> AT2G20910.1 | Symbols: | pseudogene, vacuolar ATP synthase subunit
B, blastp match of 94% identity and 2.9e-211 P-value
to GP|13366196|dbj|BAB39419.1||AP002901 putative H+-transporting
ATP synthase {Oryza sativa (japonica cultivar-group)}
| chr2:8994148-8996804 REVERSE LENGTH=2657
Length=2657
Score = 254 bits (137), Expect = 3e-66
Identities = 182/204 (89%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 426 GGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGGATA 485
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 890 GGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACTGGCATT 949
Query 486 TCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAAGATTCCCCTCTTTTCTGCT 545
|| |||||||||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct 950 TCAACCATTGATGTCATGAACTCCATTGCTAGAGGACAGAAAATTCCCCTCTTTTCTGCC 1009
Query 546 GCAGGTCTTCCC-CACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAA 604
|| ||||| || ||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 1010 GCCGGTCT-CCTTCACAATGAAATCGCTGCTCAGATCTATCGCCAGGCTGGTTTGGTTAA 1068
Query 605 GCGTTTAGAGAAGTCGGATAATCT 628
||||||||||||||| |||||||
Sbjct 1069 GCGTTTAGAGAAGTCACATAATCT 1092
Score = 215 bits (116), Expect = 1e-54
Identities = 132/140 (94%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 777 GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATTGCTCTTACAACGGCTGAG 836
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1450 GCAAACGACCCCACTATTGAACGTATCATCACTCCTCGTATTGCTCTCACAACGGCTGAG 1509
Query 837 TACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTCTCACAGACATGAGTTCCTAC 896
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1510 TATTTGGCATATGAATGTGGCAAGCATGTCCTTGTTATTCTTACAGACATGAGCTCTTAT 1569
Query 897 GCTGATGCTCTTCGTGAGGT 916
||||||||||||||||||||
Sbjct 1570 GCTGATGCTCTTCGTGAGGT 1589
Score = 91.6 bits (49), Expect = 2e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 253 AGGTATTTGAGGGAACATCTGGAATTGACAACAAGTACACAACTGTGCAATTTACAGGAG 312
|||| ||||||||||||||||||||||||||||||||||| || || ||||||||||| |
Sbjct 570 AGGTCTTTGAGGGAACATCTGGAATTGACAACAAGTACACCACCGTTCAATTTACAGGGG 629
Query 313 AGGT 316
||||
Sbjct 630 AGGT 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5