BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490617
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38530.1 | Symbols: ATPLC1, PLC1 | phospholipase C1 | chr4:1... 1395 0.0
> AT4G38530.1 | Symbols: ATPLC1, PLC1 | phospholipase C1 | chr4:18020674-18022985
FORWARD LENGTH=1816
Length=1816
Score = 1395 bits (755), Expect = 0.0
Identities = 841/882 (95%), Gaps = 7/882 (1%)
Strand=Plus/Plus
Query 902 AACAAGATTCTTGAAGAAGA-AGGAGAAT-TGGAGAGTGAAGCTGTAGGAGGATATAGAG 959
|||||||||||||||||| | | || || |||||||||||||||| |||||||||||
Sbjct 869 AACAAGATTCTTGAAGAATATA-AAG-ATATGGAGAGTGAAGCTGT---AGGATATAGAG 923
Query 960 ACTTGATCGCAATCCACGCTGCAAACTGCAAAGATCCTTTGAAGGATTGCTTGAGTGATG 1019
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 924 ACTTGATAGCAATCCACGCTGCAAACTGCAAAGATCCTTCAAAGGATTGCTTGAGTGATG 983
Query 1020 ATCCAGAGAAGCCTCGAAGGGTTAGCATGGACGAGCAGTGGCTAGAGACTATGGTTAGGA 1079
|||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 984 ATCCAGAGAAGCCTATACGGGTCAGCATGGACGAGCAGTGGCTAGACACTATGGTTAGGA 1043
Query 1080 CCAGAGGAACGGATCTTGTCAGGTTTACACAGAGGAATCTGGTGAGGATATATCCAAAGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCAGAGGAACGGATCTTGTCAGGTTTACACAGAGGAATCTGGTGAGGATATATCCAAAGG 1103
Query 1140 GTACAAGAGTGGACTCGTCAAACTACGATCCCCATGTTGGTTGGACACACGGTGCTCAAA 1199
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1104 GCACAAGAGTGGACTCGTCAAACTACGATCCTCATGTTGGGTGGACACACGGTGCTCAAA 1163
Query 1200 TGGTTGCTTTTAACATGCAAGGACATGGGAAGCAACTATGGATAATGCAAGGAATGTTCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TGGTTGCTTTTAACATGCAAGGACATGGGAAGCAACTATGGATAATGCAAGGAATGTTCA 1223
Query 1260 GGGCGAATGGTGGATGTGGGTACGTTAAAAAGCCTCGCATCTTGCTAGACGAGCACACAC 1319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GGGGGAATGGTGGATGTGGGTACGTTAAAAAGCCTCGCATCTTGCTAGACGAGCACACAC 1283
Query 1320 TCTTCGACCCTTGCAAAAGGCTTCCCATCAAGACCACTCTCAAGGTGAAGATTTACACAG 1379
|||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1284 TCTTCGACCCTTGCAAAAGGTTTCCCATTAAGACCACTCTTAAGGTTAAGATTTACACTG 1343
Query 1380 GCGAAGGATGGGATTTGGATTTCCATCAGACACATTTTGATCAATACTCTCCTCCAGATT 1439
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1344 GCGAAGGATGGGATTTGGATTTCCATCATACACACTTTGATCAATACTCTCCTCCAGATT 1403
Query 1440 TCTTCGTAAAGATTGGAATAGCAGGAGTTCCGAGAGACACGGTCTCATACAGAACGGAAA 1499
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1404 TCTTCGTCAAGATTGGAATAGCAGGAGTACCGAGAGACACGGTCTCATACAGAACGGAAA 1463
Query 1500 CAGCTGTCGATCAGTGGTTTCCTATATGGAGCAACGACGAGTTCCTGTTTCAGCTGTGTG 1559
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1464 CAGCTGTCGATCAGTGGTTTCCTATATGGGGCAACGACGAGTTCCTGTTTCAGCTGTCTG 1523
Query 1560 TTCCAGAACTGGCGCTTCTGTGGTTCAAGGTCCAAGACTACGACAATGACACCCAGAATG 1619
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1524 TTCCAGAACTGGCGCTTCTGTGGTTCAAAGTCCAAGACTACGACAATGACACCCAGAATG 1583
Query 1620 ATTTCGCAGGACAGACATGTCTTCCTCTGCCGGAACTGAAGTCCGGAGTCAGAGCCGTCC 1679
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1584 ATTTCGCAGGACAGACATGTCTTCCTCTGCCGGAACTGAAGTCCGGAGTTAGAGCCGTCC 1643
Query 1680 GGCTTCACGATCGGGCAGGCAAGGCTTACAAAAACACGAGGCTTCTCGTCAGCTTCGCCT 1739
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1644 GGCTTCACGATCGAACAGGCAAGGCCTACAAGAACACGAGGCTTCTCGTCAGCTTCGCCT 1703
Query 1740 TGGATCCTCCTTATACGTTTCACTGAAACTCGTTTTCTTTCC 1781
||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1704 TGGATCCTCCTTATACGTTTCGTTGAATCTCGTTTTCTTTCC 1745
Score = 1352 bits (732), Expect = 0.0
Identities = 827/873 (95%), Gaps = 5/873 (1%)
Strand=Plus/Plus
Query 1 ATGCTCTCAGAACTAACAAGTAAGAAGAATAAGAAGAATGTCGGAGAGTTTCAAAGTGTG 60
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGATCTCAGAACTAACAAGTAAGAAG---AAGAAGAATGTCGGAGAGTTTCAAAGTGTG 57
Query 61 CTTCTGTTGTAGCAGAAGCTTCAAGGAGAAAACGAGGGAACCACCAGTGAGCATCAAGAG 120
||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 58 CTTCTGTTGCAGCAGAAGCTTTAAGGAGAAAACGAGGCAGCCACCAGTGAGCATCAAGAG 117
Query 121 ACTCTTCGAAGCTTACTCAAGAAACGGCAAGATGTCTTTCGATGAGCTTCTTAGATTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 ACTCTTCGAAGCTTACTCAAGAAACGGCAAGATGTCTTTCGATGAGCTTCTAAGATTTGT 177
Query 181 GAGTGAAGTTCAAGGAGAGCGGCACGCAGGGTTGGACTACGTGCAGGATATCTTCCACAG 240
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GAGTGAAGTCCAAGGAGAACGGCACGCAGGGTTGGACTACGTGCAAGATATCTTCCACAG 237
Query 241 CGTTAAACACCACAACATTTTTCATCACCATGGACTTGTTCATCTCAACGCCTTCTATCG 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGTTAAACACCACAACGTTTTTCATCACCATGGACTTGTTCATCTCAACGCCTTCTATCG 297
Query 301 GTACCTCTTCAGCGATACCAACTCTCCTCTTCCCATGTCTGGCCAGGTGCATCATGACAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTACCTCTTCAGCGATACCAACTCTCCTCTTCCCATGTCTGGCCAGGTGCATCATGACAT 357
Query 361 GAAGGCGCCGTTATCGCATTACTTTGTCTACACGGGACACAACTCTTACTTGACTGGGAA 420
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 358 GAAGGCGCCGTTATCGCATTACTTTGTGTACACGGGACATAACTCTTACTTGACTGGGAA 417
Query 421 CCAAGTGAACAGCAGAAGCAGCGTGGAGCCGATCGTGCAGGCTCTCAGAAAAGGCGTAAA 480
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 418 CCAAGTGAACAGCAGAAGCAGCGTAGAACCGATCGTGCAGGCTCTCAGAAAAGGCGTAAA 477
Query 481 GGTGATCGAGCTCGACTTATGGCCTAATCCTTCAGGGAACGCTGCTGAAGTTCGTCATGG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTGATCGAGCTCGACTTATGGCCTAATCCTTCAGGGAACGCTGCTGAAGTTCGTCATGG 537
Query 541 CAGGACATTTACATCGCATGAAGATCTGCAGAAATGTCTGAAC-GCCATCAAGGATAACG 599
|||||| |||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||
Sbjct 538 CAGGACGCTTACTTCGCATGAAGATTTGCAGAAATGTCT-AACCGCCATTAAGGATAACG 596
Query 600 CGTTTTACGTGTCTGACTATCCAGTCGTGATCACTCTCGAAGATCATTTGCCACCCAATC 659
||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 597 CGTTTCATGTGTCTGACTATCCAGTCATCATCACTCTCGAAGATCATTTGCCACCCAAGC 656
Query 660 TTCAAGCGCAAGTTGCTAGGATGTTAACTAAAACATTCAGAGGGATGCTGTTTCGTTGTG 719
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 657 TTCAAGCGCAAGTTGCTAAGATGTTAACTAAAACATACAGAGGGATGCTGTTTCGTCGTG 716
Query 720 GCTCAGAGAGTTGGAAGCATTTTCCATCACCAGAAGAACTTAAGAAGAAGATTCTCATCT 779
||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 717 TCTCAGAGAGTTTTAAGCATTTTCCATCACCAGAAGAACTTAAGGGGAAGATCCTGATCT 776
Query 780 CTACGAAGCCTCCAAAGGAGTATCTTGAGAGCAAAACTGTACAGACAACAAGAACTCCTA 839
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 777 CTACGAAGCCTCCAAAGGAGTATCTTGAGAGCAAAACTGTACACACCACAAGAACTCCAA 836
Query 840 TGGTTAAAGAGACTTCGTGGAGCAGAGTAGCGA 872
|||||||||||||||||||| |||||||||||
Sbjct 837 CGGTTAAAGAGACTTCGTGGAACAGAGTAGCGA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5