BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490619
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38540.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1893 0.0
AT5G05320.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1197 0.0
AT4G38545.1 | Symbols: | other RNA | chr4:18023022-18025287 RE... 383 2e-105
> AT4G38540.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr4:18023121-18025027 FORWARD LENGTH=1490
Length=1490
Score = 1893 bits (1025), Expect = 0.0
Identities = 1194/1274 (94%), Gaps = 18/1274 (1%)
Strand=Plus/Plus
Query 1 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCACCCCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 30 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCAGCCCAGA 89
Query 61 CATCATCATCGTCGGCGCCGGAATCTCCGGGCTTTCCACAGCTGTTGGACTACACAGGCT 120
||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 90 TATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGGCT 149
Query 121 TGGGATCAGGAGCATGGTGCTGGAATCTTCAGAGAAACTGAGAGCGACAGGGTTTGC-TC 179
||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||| |
Sbjct 150 TGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGATTTGCAT- 208
Query 180 TTACGACTTATTTCAATGCTTGGAAGGCCATGGAAGCTCTCGACGTTGCTCAGCATATTC 239
|||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 209 TTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCAGCATATTC 268
Query 240 GCAGTCTCCATGATCGTCTTCAAGGATGGGTGGTTGGACCAATTTCTGCAGCAAATCCTC 299
|||||||||||||||| ||| ||||||||||||||||| |||||||||||| || |||||
Sbjct 269 GCAGTCTCCATGATCGCCTTGAAGGATGGGTGGTTGGAACAATTTCTGCAGGAACTCCTC 328
Query 300 CCAAAGAGATGCTGTTTCCAGAATCCGAAGAATACGAGTCTCGATGCGTACAGAGGAAGC 359
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 329 CCACAGAGATGCTGTTTCCAGAATCCGAAGAATATGAGTCTCGATGCGTACAGAGGAAGC 388
Query 360 TGTTGTTAGAGGCTCTAGCAGGTGAGTTACCTCAAGAGTCTATAAGGTATTCGTCTAAGG 419
|||||||||||||||||||||||||||| ||| ||||| | || |||| |||||||||||
Sbjct 389 TGTTGTTAGAGGCTCTAGCAGGTGAGTTGCCTGAAGAGACCATCAGGTTTTCGTCTAAGG 448
Query 420 TTGTTCATATCG-ATCTGTCTGGACGCTACAAGATGGTTCATCTCTCCGACGGGACCATT 478
|||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 449 TTGTTCATATTGAAT-TGTCTGGATGCTACAAGAAGGTTCATCTCTCCGACGGGACCATT 507
Query 479 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCGGTGGTTGGTAAGTGGCTA 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 508 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCAGTGGTTGGTAAGTGGCTA 567
Query 539 GGCTTCAAAAATCCGGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTCCCG 598
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 568 GGCTTCAAAAATCCCGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTTCCG 627
Query 599 GAAGGCCACGGATTTGGGAAAAGGTTATTCCAGTTTTATGGAGACGGTGTTCGTTCGGGT 658
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 628 GAAGGCCATGGATTTGGGAAAAGGTTCTTCCAGTTTTATGGAGACGGCGTTCGTTCCGGT 687
Query 659 TTTATCCCCTGTGACCACAACAATGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 718
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 688 TTTATCCCATGTGACCACAACACTGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 747
Query 719 GATGAGGAGACAAATCCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAGGACTTG 778
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 748 GATGAGGAGACAAATTCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAAGACTTG 807
Query 779 CCTGAAAACATTAAGAATGTGGTGGAGACCACCGATCTTGATAGCATGGTGATGTCTCGA 838
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 808 CCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTCTCAA 867
Query 839 CTGAAGTACCGGCCTCCATGGGAACTGCTCTGGTCAAACATCACAAAAGACAATGTGTGC 898
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 868 CTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGTGTGC 927
Query 899 GTTGCAGGGGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGGGGTTGCTCAGCA 958
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 928 GTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTCAGCC 987
Query 959 ATGGAGGATGGAGTCATCCTCGCTCGTTGTCTAGGTGAAGCGATAAAAGCAAAGAATCTG 1018
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 988 ATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAGTCTG 1047
Query 1019 AAAGGTGAAACAGAAGAA---GA-GA-G----TTATAAGAGGATTGAAGAAGGTTTGAAA 1069
|||||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 1048 AAAGGTGAAACAGAAGAAAATGAAGAAGAGGGTTATAAGAGGATTGAAGAAGGTTTGAAG 1107
Query 1070 AAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTGATAACAACGGCATATACAGTA 1129
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1108 AAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTTATAACAACGGCATATACAGTA 1167
Query 1130 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTGAGAGACAGGTTCTTGTCG 1189
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1168 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTCAGAGACAGGTTCCTGTCG 1227
Query 1190 TCTTACCTATC-ACGGATGTTGCTGAAAAAGTCTCATTTCGATTGCGGAAGCCTTGTCCC 1248
|||||||| || | ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1228 TCTTACCTTTCTA-GGATGCTGCTGAAAAAGTCCCATTTCGATTGCGGAAGCCTTGTCCC 1286
Query 1249 --G-TGATTCTCAA 1259
| ||||||||||
Sbjct 1287 ATGATGATTCTCAA 1300
> AT5G05320.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:1575006-1576731 REVERSE LENGTH=1360
Length=1360
Score = 1197 bits (648), Expect = 0.0
Identities = 1060/1257 (84%), Gaps = 36/1257 (3%)
Strand=Plus/Plus
Query 34 CACCATGGAAGAAGAAGGCACCCCAGGCATCATCATCGTCGGCGCCGGAATCTCCGGGCT 93
||||||||||| ||| | |||| || |||||||||||||| || ||||||||||| ||
Sbjct 49 CACCATGGAAGCTGAAAGTACCCAAGATATCATCATCGTCGGAGCTGGAATCTCCGGCCT 108
Query 94 TTCCACAGCTGTTGGACTACACAGGCTTGGGATCAGGAGCATGGTGCTGGAATCTTCAGA 153
| |||| || |||| || ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 109 TGCCACTGCACTTGGGCTCCACAGGCTTGGGATCAGAAGCATAGTGCTGGAATCTTCTGA 168
Query 154 GAAACTGAGAGCGACAGGGTTTGCTCTTACGACT-TATTTCAATGCTTGGAAGGCCATGG 212
| | |||||||| ||||| ||||| ||| | | | ||||| |||||||||||||||||||
Sbjct 169 GCAGCTGAGAGCAACAGGATTTGCACTTTC-ATTATATTTTAATGCTTGGAAGGCCATGG 227
Query 213 AAGCTCTCGACGTTGCTCAGCATATTCGCAGTCTCCATGATCGTC-TTCAAGGATGGGTG 271
||||||||| || |||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 228 AAGCTCTCGGTATTTCTCAGCATATTCGCAGTCTCGGTGATCG-CTTTCAAGGATGGGTG 286
Query 272 GTTGGACCAATTTCTGCAGCAAATCCTCCCAAAGAGATGCTGTTTCCAGAATCCGAAGAA 331
|| |||| |||||||||| | ||||||| ||||| ||| | ||||||||||| ||||||
Sbjct 287 GTCAGACCCATTTCTGCAGGAGATCCTCCTAAAGAAATGTTATTTCCAGAATCTGAAGAA 346
Query 332 TACGA-GTCTCGATGCGTACAGAGGAAGCTGTTGTTAGAGGCTCTAGCAGGTGAGTTACC 390
|| || || ||||||||||||||||||||| |||||||| |||||||| || || || ||
Sbjct 347 TATGAGGT-TCGATGCGTACAGAGGAAGCTCTTGTTAGACGCTCTAGCGGGCGAATTGCC 405
Query 391 TCAAGAGTCTATAAGGTAT-TCGTCTAAGGTTGTTCATATCG-ATCTGTCTGGACGCTAC 448
||||| | | ||| ||| | || |||||| ||||||| |||| || |||| |||| ||||
Sbjct 406 TCAAGGGACCATACGGT-TCTCATCTAAGCTTGTTCACATCGAAT-TGTCCGGACACTAC 463
Query 449 AAGATGGTTCATCTCTCCGACGGGACCATTCTCAAAACCAAGGTTTTGGTAGGGTGCGAT 508
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct 464 AAGATGGTTCATCTCTCCGACGGGACTATACTTAAAACCAAGGTTTTGGTAGGGTGTGAT 523
Query 509 GGAGTGTACTCGGTGGTTGGTAAGTGGCTAGGCTTCAAAAATCCGGCTACAACTGCCCGG 568
|||||| | || |||||||||||||||||||||||||| ||||||| || |||| ||| |
Sbjct 524 GGAGTGAAGTCAGTGGTTGGTAAGTGGCTAGGCTTCAAGAATCCGGTTAAAACTTCCC-G 582
Query 569 T-TAGCAATCCGAGGGCTCACACATTTCCCGGA-AGGCCACGGATTTGGGAAAAGGTTAT 626
| |||||||||| ||| || | ||||| || || |||||||| ||| |||| |||||| |
Sbjct 583 TGTAGCAATCCGCGGGATCGCTCATTT-CCAGACAGGCCACGAATTAGGGAGAAGGTTCT 641
Query 627 TCCAGTTTTATGG-AGACGGTGTTCGTTCGGGTTTTATCCCCTGTGACCACAACAATGTC 685
| ||||||||||| | ||||||||||||| ||||| ||| | |||||||| |||| ||||
Sbjct 642 TTCAGTTTTATGGCA-ACGGTGTTCGTTCCGGTTTCATCTCATGTGACCAAAACACTGTC 700
Query 686 TACTGGTTCCTAACCCACACCTCCACTGATATAGATGAGGAGACAAATC--CGGAAATCC 743
||||||||||||||||||||||| |||||| ||||| | ||| ||||| | | ||
Sbjct 701 TACTGGTTCCTAACCCACACCTCTACTGATTTAGAT-A--AGAAAAATCATCAG-AA-GA 755
Query 744 TCAAAGAGTTTGTGCTGAACAAGATCAAGGACTTGCCTGAAAACATTAAGAATGTGGTGG 803
||||| |||||||||||| ||||||||| ||||||||||| ||||| |||| | | |||
Sbjct 756 TCAAACAGTTTGTGCTGACCAAGATCAAAGACTTGCCTGACAACATCAAGAGTATCCTGG 815
Query 804 AGACCACCGATCTTGATAGCATGGTGATGTCTCGACTGAAGTACCGGCCTCCATGGGAAC 863
||||||| ||||||||||| |||||||| || ||| | ||| || ||||| |||||||
Sbjct 816 AGACCACTGATCTTGATAGTTTGGTGATGAATCCACTCATGTATCGACCTCCCTGGGAAC 875
Query 864 TGCTCTGGTCAAACATCACAAAAGACAATGTGTGCGTTGCAGGGGATGCACTTCACCCAA 923
| || ||| ||||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct 876 TTCTTTGGGCAAACATTGCAAAAGACAACGTATGTGTTGCAGGGGATGCACTTCACCCAA 935
Query 924 TGACTCCTGATATCGGACAAGGGGGTTGCTCAGCAATGGAGGATGGAGTCATCCTCGCTC 983
||||||||||||| |||||||| |||||||| || |||||||| ||||| ||||||||||
Sbjct 936 TGACTCCTGATATTGGACAAGGTGGTTGCTCGGCGATGGAGGACGGAGTTATCCTCGCTC 995
Query 984 GTTGTCTAGGTGAAGCGATAAAAGCAAAGAATCTGAAAGGTGAAACAGAAGA--AGA--G 1039
||||||| |||||||| || ||||| |||||| ||||||||||||||||||| ||| |
Sbjct 996 GTTGTCTCGGTGAAGCAATGAAAGCTAAGAATATGAAAGGTGAAACAGAAGATGAGAACG 1055
Query 1040 AG--TTATAAGAGGATTGAAGAAGGTTTGAAAAAGTATGCAGGAGAAAGGAAATGGAGAA 1097
|| ||||| | |||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 1056 AGAGTTATAGGCGGATTGAAGATGGTTTGAAGAAGTATGCAGGATCGAGGAAATGGAGAA 1115
Query 1098 GCATTGATCTGATAACAACGGCATATACAGTAGGATTCATACAGCAGAGCAGAGGGAAGT 1157
|||||||||| ||||| || ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1116 GCATTGATCTTATAACTACATCATATACAGTAGGTTTCATACAGCAGAGCAGAGGCAAGT 1175
Query 1158 GGATGAACATGTTGAGAGACAGGTTCTTGTCGTCTTACCTATCACGGATGT-TGCTGAAA 1216
|||||| | |||| ||||||| |||| |||| |||| ||| || || || || |||||
Sbjct 1176 GGATGACCCTGTTTAGAGACAAGTTCATGTCCTCTTTCCTTTCTTGGTTGCGTG-TGAAA 1234
Query 1217 AAGTCTCATTTCGATTGCGGAAGCCTT-GTCCC-G--TGATTCTCAATGAGCAAGCA 1269
|||||||||||| | || ||||| ||| | || | ||||||||||||||||||||
Sbjct 1235 AAGTCTCATTTCAACTGTGGAAGACTTAG-CCATGAATGATTCTCAATGAGCAAGCA 1290
> AT4G38545.1 | Symbols: | other RNA | chr4:18023022-18025287
REVERSE LENGTH=1140
Length=1140
Score = 383 bits (207), Expect = 2e-105
Identities = 231/243 (95%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 775 CTTGCCTGAAAACATTAAGAATGTGGTGGAGACCACCGATCTTGATAGCATGGTGATGTC 834
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 523 CTTGCCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTC 464
Query 835 TCGACTGAAGTACCGGCCTCCATGGGAACTGCTCTGGTCAAACATCACAAAAGACAATGT 894
|| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 463 TCAACTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGT 404
Query 895 GTGCGTTGCAGGGGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGGGGTTGCTC 954
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 403 GTGCGTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTC 344
Query 955 AGCAATGGAGGATGGAGTCATCCTCGCTCGTTGTCTAGGTGAAGCGATAAAAGCAAAGAA 1014
||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 343 AGCCATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAG 284
Query 1015 TCT 1017
|||
Sbjct 283 TCT 281
Score = 209 bits (113), Expect = 4e-53
Identities = 140/153 (92%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 113 CACAGGCTTGGGATCAGGAGCATGGTGCTGGAATCTTCAGAGAAACTGAGAGCGACAGGG 172
||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 832 CACAGGCTTGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGA 773
Query 173 TTTGC-TCTTACGACTTATTTCAATGCTTGGAAGGCCATGGAAGCTCTCGACGTTGCTCA 231
||||| | |||| |||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 772 TTTGCAT-TTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCA 714
Query 232 GCATATTCGCAGTCTCCATGATCGTCTTCAAGG 264
|||||||||||||||||||||||| ||| ||||
Sbjct 713 GCATATTCGCAGTCTCCATGATCGCCTTGAAGG 681
Score = 180 bits (97), Expect = 4e-44
Identities = 111/118 (94%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCACCCCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1012 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCAGCCCAGA 953
Query 61 CATCATCATCGTCGGCGCCGGAATCTCCGGGCTTTCCACAGCTGTTGGACTACACAGG 118
||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 952 TATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGG 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5