BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490623
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38570.1 | Symbols: PIS2 | probable CDP-diacylglycerol--inos... 797 0.0
> AT4G38570.1 | Symbols: PIS2 | probable CDP-diacylglycerol--inositol
3-phosphatidyltransferase 2 | chr4:18031279-18033563
REVERSE LENGTH=1109
Length=1109
Score = 797 bits (431), Expect = 0.0
Identities = 548/599 (91%), Gaps = 29/599 (5%)
Strand=Plus/Plus
Query 249 CAGAGA-AGTCAGTACTGCCTGTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCT 307
|||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CAGATAGAGTCAGCACAGCCTGTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCT 576
Query 308 TGGTTTTCCTGTCATTGCTCGCTCTAGCTTTCGCTAGTCACTGGCTCCAAATGTACAG-A 366
||||||||||||||||||| ||| ||| | |||||||||||||||| ||||||||||| |
Sbjct 577 TGGTTTTCCTGTCATTGCTGGCTTTAGATATCGCTAGTCACTGGCTGCAAATGTACAGTA 636
Query 367 --AT--TAT------TG-CCAGCCACAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTA 415
| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 637 CCTTCCTATCAGGGAAGACCAGCCATAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTA 696
Query 416 GACTCTACTATGGAAACCGGATGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTT 475
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GACTCTATTATGGAAACCGGATGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTT 756
Query 476 ATATAACCCTTCTTCTCATAGCAAAGAACCAAACCGAATACTTGACGAACGTGGTAGTGA 535
|||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 757 ATATAATCCTTCTTCTCATAGCAACGAACCAAACCGAAAACTTGATGAACGTGGTAGTGA 816
Query 536 AATCATTGATGCAGATTTCACCGCTCTCTTTACTCTTGGCTTTGAGCATATTTGGTTGGT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AATCATTGATGCAGATTTCACCGCTCTCTTTACTCTTGGCTTTGAGCATATTTGGTTGGT 876
Query 596 CGATCAAGCAGATCATCAACGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGT 655
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CCATCAAGCAGATCATCAATGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGT 936
Query 656 ATGACATAGAGAAACAGCATAAGAAGCCTTGACGTTATGTGCCCATGAATCGTGTTTAAC 715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 937 ATGACATAGAGAAACAGCATAAGAAGCCTTGACGTTATGTGCCCGTGAATCGTGTTTAAC 996
Query 716 TCTTTTGTTTCATGTTGTGTAC-A---T--AC----GGATCCATCTTGTTTAGTGGTGGA 765
|||||||||||||||||||||| | | || |||||||||||||||||| |
Sbjct 997 TCTTTTGTTTCATGTTGTGTACGACACTGTACATACGGATCCATCTTGTTTAGT-----A 1051
Query 766 TGTAGATAAAACTCTTGTCTTTGAATGCATTCACTATTTTCACAAATTTCATGTCTTCT 824
|||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 1052 TGTAGATAAA-CTCTTGTCTTTAAATCCATTCACTATTTTCAGAAATTTCATGTCTTCT 1109
Score = 287 bits (155), Expect = 1e-76
Identities = 169/176 (96%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 3 GGCGACGCTCTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATAATAGTTCTCTT 62
||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 308 GGCGACGTTGTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATGAGAGTTCTCTT 367
Query 63 GAACTGCATTGCCTTCTCTGTGTGCTTCTCCAACAAGACACTCTTCTCGCTCTTGTACTT 122
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 368 GAACTGCATTGCCTTCTCTGTGTGCTTCTCCAACAAGACACTCTTCTCCCTCTTGTACTT 427
Query 123 TTTCAGTTTTTGTTGTGATGCTGTCGATGGATGGTGCGCTCGTAAATTCAACCAAG 178
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 428 TTTCAGTTTTTGTTGTGATGCTGTGGATGGATGGTGCGCTCGTAAATTTAACCAAG 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5