BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490627
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory p... 2034 0.0
> AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory
particle non-ATPase 10 | chr4:18057130-18059540 REVERSE LENGTH=1469
Length=1469
Score = 2034 bits (1101), Expect = 0.0
Identities = 1295/1384 (94%), Gaps = 31/1384 (2%)
Strand=Plus/Plus
Query 49 ACGATGGTTCTCGAGGCGACTATGATATGCATCGACAACTCCGAGTGGATGCGAAACGGA 108
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 79 ACGATGGTTCTCGAGGCGACTATGATATGTATCGACAACTCCGAGTGGATGCGAAACGGA 138
Query 109 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGTGGGGCC 168
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 139 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGCGGAGCC 198
Query 169 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATATTGACAATGGCTGGCAAAGGAGTT 228
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 199 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATTTTGACAATGGCTGGCAAAGGAGTT 258
Query 229 AGAGTTTTGACTACGCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 288
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGAGTATTGACTACTCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 318
Query 289 GATGTTGGAGGAGAGATCAATTTAACAGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 348
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 319 GATGTGGGAGGAGAGATCAACTTAACCGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 378
Query 349 CATCGCCAAAACAAGAATCAACGCCAACGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 CATCGCCAAAACAAGAATCAACGCCAAAGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 438
Query 409 TACGAAAAGAAGGCCCTAGAAG-TAGTTGGCAAAAGGCTGAAGAAGAATAGTGTCTCTCT 467
||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 439 TACGAGAAGAAGGCCCTAG-AGATAGTTGGAAAAAGGCTGAAGAAGAATAGTGTCTCTCT 497
Query 468 TGACATTGTCAATTTCGGGGAAGATGATGATGAGGAAAAGCCTCAGAAGCTGGAGGCCCT 527
||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 498 TGATATTGTCAATTTCGGGGAGGATGATGATGAGGAAAAGCCTCAGAAACTCGAGGCGCT 557
Query 528 CCTTACTGCCGTCAATAACAACGACGGTAGCCACATTGTTCATGTTCCATCTGGAGCCAA 587
|||||| || || |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 558 CCTTACAGCTGTGAATAACAATGACGGTAGCCACATTGTTCATGTTCCTTCTGGAGCCAA 617
Query 588 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTCTTCACGGGTGATGAGGGTGCAAGTGG 647
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 618 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTATTCACGGGTGATGAGGGTGCAAGTGG 677
Query 648 GTATGTTTCTGCGGCAGCTGCTGCAGCTGCAGCAGGTGGGGACTTTGACTTTGGTGTAGA 707
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 678 CTATGTTTCTGCGGCAGCTGCTGCAGCGGCCGCAGGTGGGGACTTCGACTTTGGTGTGGA 737
Query 708 CCCAAATATCGATCCAGAGCTTGCTCTCGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 767
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 CCCAAATATCGATCCAGAACTTGCTCTTGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 797
Query 768 AAGACAAGAGGCTGCTGCTAAGAAGGCAGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 827
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 798 AAGACAAGAAGCTGCTGCCAAGAAGGCGGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 857
Query 828 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGAGAAGAACGCTGAACC 887
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 858 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGACAAGAACGCTGAACC 917
Query 888 AATGGATGAGGACAGTGCGCTGCTAGATCAGGCAATTGCTATGTCTGTAGGTGATGTGAA 947
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 918 AATGGATGAGGACAGTGCGTTGCTAGATCAGGCAATTGCTATGTCTGTTGGTGATGTGAA 977
Query 948 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1037
Query 1008 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAATCTCTTGGGAGATCAAGCCTT 1067
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1038 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAACCTCTTGGGAAATCAAGCCTT 1097
Query 1068 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTAGATCCAAATGATCCAGCGGTTAAAGC 1127
||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1098 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTGGATCCAAATGATCCGGCAGTTAAAGA 1157
Query 1128 GTTGCTAGCGTCTCTGCCAGACGAGTCAAAGGTGCGGAACgaggaggaagagagtagtag 1187
| ||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1158 ACTACTAGCGTCTCTGCCAGACGAGTCAAAG---CGTACCGAGGAGGAAGAGAGTAGTAG 1214
Query 1188 caaa---ggtgaggatgagaagaagtgaagaaggaagagagaggTCTGAATAAAAATTCC 1244
|||| || ||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1215 CAAAAAAGGCGAGGATGAGAAGAAGTGAAGAAGGATCTGAGAG-TCTCAATAAAAATTCC 1273
Query 1245 TCTTGTTTCTTTGGTTTGATAGAGATTGGGACTGATTTTAACTAATCTCTCTGCCTTATG 1304
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1274 TCTTGTTTCTTTGGTTTGATAGAGATTGGAACTGAATTTAACTAATCTCTCTGCCTTGTG 1333
Query 1305 AACTTTGttttttt-------------------ATAATGTTGTTATTGTACGAGTCAAAG 1345
|| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1334 AAATTTGTTTTTTTCTCTCTCTCTCGCCTTTTTATAATGTTGTTATTGTACGAGTCAA-G 1392
Query 1346 GACTAGCTTCCTTCTTAATTTTTATCGGACTTTATGTCGAATGGGGCTCTTAGAAAGTAG 1405
||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 1393 GACTAGCTTCCTTCTTAATTTTTATTGGACTTTATGTC-AATGGG-CTCTTAGAAAGTAA 1450
Query 1406 GCCT 1409
||||
Sbjct 1451 GCCT 1454
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 CTAAAATCTAAATCTTGCGTTCCTGACTTTCTCTCTACGACAGAATTT 48
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 6 CTAAAATCTAAATCTTGCCTTCCTGACTTTCTCTCTACGACAGAATTT 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69427353735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5