BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490628
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38650.1 | Symbols: | Glycosyl hydrolase family 10 protein ... 2907 0.0
AT4G38300.1 | Symbols: | glycosyl hydrolase family 10 protein ... 800 0.0
> AT4G38650.1 | Symbols: | Glycosyl hydrolase family 10 protein
| chr4:18063166-18065849 FORWARD LENGTH=1980
Length=1980
Score = 2907 bits (1574), Expect = 0.0
Identities = 1814/1931 (94%), Gaps = 12/1931 (1%)
Strand=Plus/Plus
Query 1 AAAACCCACTTCGCGTATAACAACATCATCACGTGAACTCACTCAATAGGTTCAGTGTTT 60
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACCACTTCGCATATAACAACATCATCACGTGAACTCACTCAATAGGTTCAGTGTTT 60
Query 61 CTGACTATATTGTTCCCTCTCTGATTGAAACTCTCCCAAATATAGATTGGCCTAACCACC 120
||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 61 CTGAC-ATATTGTTCCCTCTCTGAATGAAACTCTCCCAAATAGAGAATGGCCTAACCACC 119
Query 121 CATCCAACCACATCAACACACTTCGTTTCATCGCCCTGATCGAATT-TCTCtttttttCT 179
|||||||| |||||| ||||| |||||||| |||| | || || |||||||||||||
Sbjct 120 TATCCAACCGCATCAAGGCACTTGGTTTCATC-CCCT--T-GATTTCTCTCTTTTTTTCT 175
Query 180 TTTCCTATCTCAAAATTGTGTGTTCTTGTTATG-GTCATGAAATACTCTTAC-ATGTATT 237
||||||||| || ||| |||||||||||| || | ||||||| || | | |||| ||
Sbjct 176 TTTCCTATCGCAGGATTTTGTGTTCTTGTTTTGAAT-ATGAAATGTTCGT-CGATGTGTT 233
Query 238 GTTTGATTTTCTTGGCCCTTTCTCTCCTCACCGCCTTCACTCCTGCTTCTTCGTCAAATG 297
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 GTTTGATCCTCTTGGCCCTTTCTCTCCTCACCGCCTTCACTCTTGCTTCTTCGTCAAATG 293
Query 298 GTCTAGATGGACCATTCTACGACTCTACCGCCTACACAGAGTGTAGAGCAGAAGCAGAGA 357
|| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 294 GTATAGATGGACCTTTCTACGACTCTACTGCCTACACAGAGTGTAGAGCCGAAGCAGAGA 353
Query 358 AGCCACTGTACAACGGAGGAATGCTGAAGGACCAAAAGCCTTCTGTCTCAGGCAGAGACT 417
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 354 AGCCACTATACAATGGAGGAATGCTGAAGGACCAAAAGCCTTCCGTCCCAGGCAAAGACT 413
Query 418 CTCTCACAGGCATTGGTGCTCGTTACACACCAACTTACATATTGCACAATCTCACGCAGA 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 414 CTCTCACAGGCATTGGTGCTCATTACACACCAACTTACATATTGCACAATCTCACACAGA 473
Query 478 ACACCATCTATTGCTTCTCCATTTGGGTGAAGATAGAGGCTGGTGCTGCATCAGCTCGTG 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 474 ACACCATCTATTGCTTCTCCATATGGGTGAAGATAGAGGCTGGTGCTGCATCAGCTCATG 533
Query 538 TAAGGGCAAGGCTGAGAGCAGACAACGCCACTTTAAACTGCGTCGGTTCTGTAACTGCCA 597
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 534 TAAGAGCAAGGCTGAGAGCAGACAACGCCACATTAAACTGCGTCGGTTCTGTAACTGCCA 593
Query 598 AACATGGTTGCTGGTCTTTCCTCAAAGGCGGCTTCCTTCTTGATTCTCCTTCTAACCAAT 657
|||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||
Sbjct 594 AACATGGTTGCTGGTCTTTCCTCAAAGGAGGATTCCTTCTTGATTCTCCTTGTAAACAAT 653
Query 658 CCATCCTCTTCTTTGAGACATCAAACGACGATAGCAAGATCCAATTACAAGTGGCGAGTG 717
||||||||||||||||||||||| | |||||| | |||||||||||||||||| ||||||
Sbjct 654 CCATCCTCTTCTTTGAGACATCAGAGGACGATGGTAAGATCCAATTACAAGTGACGAGTG 713
Query 718 CTTCTCTTCAGCCCTTCACGCAGGAGCAATGGAGGAACAACCAAGATTACTTCATTAATA 777
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 CCTCTCTTCAGCCATTCACGCAGGAGCAATGGAGGAACAACCAAGATTACTTCATAAATA 773
Query 778 CCGCGAGAAAACGAGCAGTGACAATTCACGTGTCCGAAGAAAACGGAGAGAGCGTTGAAG 837
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 CCGCGAGAAAACGAGCAGTGACAATTCACGTGTCAAAAGAAAACGGAGAGAGCGTTGAAG 833
Query 838 GAGCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCCCCATTGGATCTGCCATCTCCA 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 GAGCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCTCCATTGGATCTGCCATCTCCA 893
Query 898 AAACTATTCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTTGACGCCACTG 957
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 894 AAACTATCCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTCGACGCCACGG 953
Query 958 TGTTCGAGAACGAGCTGAAATGGTACGCGACGGAGCCCGATCAAGGCAAACTCAATTACA 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 954 TATTCGAGAACGAGCTGAAATGGTACGCGACGGAGCCCGATCAAGGCAAACTCAACTACA 1013
Query 1018 CATTGGCTGATAAGATGATGAATTTCGTCAGAGCCAACAGAATCATCGCTCGCGGCCACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1014 CATTGGCTGATAAGATGATGAATTTCGTCAGAGCCAACAGAATCATCGCTCGCGGTCACA 1073
Query 1078 ACATCTTCTGGGAGGATCCCAAATACAATCCCAATTGGGTTCGTAATCTAACCGGCCAAG 1137
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1074 ACATATTCTGGGAGGATCCCAAATACAATCCCGATTGGGTTCGTAATCTAACCGGCGAAG 1133
Query 1138 ATCTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTAATGACTCGGTACAGAGGGGAGT 1197
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1134 ATCTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTGATGACTCGGTACAGAGGAGAGT 1193
Query 1198 TCGTGCACTGGGACGTGAGCAACGAGATGCTTCACTTCGACTTCTACGAGAGTCGACTGG 1257
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1194 TCGTGCATTGGGACGTGAGCAACGAGATGCTTCACTTTGACTTCTACGAGACTCGACTGG 1253
Query 1258 GGAAGAACGCCTCGTACGGGTTCTTCGCGGCGGCGCGTGAGATTGACTCGCTGGCGACTC 1317
|||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 1254 GGAAGAACGCGTCGTACGGATTCTTCGCCGCGGCTCGTGAGATTGACTCATTGGCGACTC 1313
Query 1318 TGTTCTTTAATGATTTCAACGTGGTGGAGACTTGCAGCGACGAGAAGTCGACGGTTGACG 1377
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 TGTTCTTCAATGATTTCAACGTGGTGGAGACTTGCAGCGACGAGAAGTCAACGGTTGACG 1373
Query 1378 AATACATCGCGAGGGTGAGGGAACTCCAACGGTACGACGGCATAAGGATGGATGGAATCG 1437
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1374 AATACATCGCGAGGGTGAGGGAACTCCAACGGTACGACGGCGTAAGGATGGACGGAATAG 1433
Query 1438 GTCTCGAGGGTCACTTCACGACGCCGAACGTGGCGCTAATGAGAGCAATCCTCGACAAAC 1497
||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||
Sbjct 1434 GTCTCGAGGGTCACTTCACGACGCCAAACGTAGCGCTGATGAGAGCCATCCTCGATAAAC 1493
Query 1498 TCGCGACGCTCCAGCTCCCAATCTGGCTCACCGAAATTGATATCAGCAGCAGCCTCGACC 1557
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1494 TCGCTACGCTCCAGCTCCCAATCTGGCTCACCGAGATTGATATCAGCAGCAGCCTCGACC 1553
Query 1558 ACCCCACGCAGGCGATTTATTTGGAGCAAGTGTTACGTGAAGGATTCTCGCACCCATCGG 1617
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 ACCGCTCTCAGGCGATTTATTTGGAGCAAGTGTTACGTGAAGGATTCTCGCACCCATCGG 1613
Query 1618 TGAACGGTATAATGCTATGGACCGCACTTCACCCAAACGGTTGTTACCAAATGTGCCTCA 1677
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1614 TAAACGGTATAATGCTATGGACCGCACTTCACCCAAACGGCTGTTACCAAATGTGCCTCA 1673
Query 1678 CCGACGATAAATTCCGGAACCTTCCAGCCGGAGACGTGGTGGATCAGAAGCTTCTAGAAT 1737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CTGACGATAAATTCCGGAACCTTCCAGCCGGAGACGTGGTGGATCAGAAGCTTCTAGAAT 1733
Query 1738 GGAAGACTCGTGA-GTTTAAGGCGACAACCGACGACCATGGTTCCTTCAGCTTCTTCGGC 1796
|||||||| |||| ||| |||||||| || || |||||||||||||| ||||||||||||
Sbjct 1734 GGAAGACTGGTGAAGTT-AAGGCGACGACAGATGACCATGGTTCCTTTAGCTTCTTCGGC 1792
Query 1797 TTTTTGGGAGAGTATAGAGTTGGCATCATATACCAAGGTAAAATGGTTAATTCGTCTTTC 1856
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1793 TTTTTGGGAGAGTATAGAGTTGGCATCATGTACCAAGGTAAGACGGTTAATTCGTCTTTC 1852
Query 1857 TCGTTATCTCAAGGCCCTGAGACCAAACATGTGAGGCTTCAAATCTAACACAGCGACTCC 1916
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1853 TCGTTATCTCAAGGCCCTGAGACCAAACATGTGAGGCTTCAAATCTAACTTAACGGCTCT 1912
Query 1917 ATGTTTAAGAT 1927
|||||||||||
Sbjct 1913 ATGTTTAAGAT 1923
> AT4G38300.1 | Symbols: | glycosyl hydrolase family 10 protein
| chr4:17944556-17945491 REVERSE LENGTH=834
Length=834
Score = 800 bits (433), Expect = 0.0
Identities = 470/488 (96%), Gaps = 2/488 (0%)
Strand=Plus/Plus
Query 780 GCGAGAAAACGAGCAGTGACAATTCACGTGTCCGAAGAAAACGGAGAGAGCGTTGAAGGA 839
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 31 GCGAGAAAACGAGCAGTGACAATTCACGTGTCAAAAGAAAACGGAGAGAGCGTTGAAGGA 90
Query 840 GCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCCCCATTGGATCTGCCATCTCCAAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCCCCATTGGATCTGCCATCTCCAAA 150
Query 900 ACTATTCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTTGACGCCACTGTG 959
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 151 ACTATCCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTCGACGCCACGGTA 210
Query 960 TTCGAGAACGAGCTGAAATGGTACGCGACGGAGCCCGATCAAGGCAAACTCAATTACACA 1019
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 211 TTCGAGAACGAGCTGAAATGGTACGCGACGGAGTCCGATCAAGGCAAACTCAACTACACA 270
Query 1020 TTGGCTGATAAGATGATGAATTTCGTCAGAGCCAACAGAATCATCGCTCGCGGCCACAAC 1079
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 271 TTGGCTGATAAGATGATGAATCTCGTCAGAGCTAACAGAATCATCGCTCGCGGCCACAAC 330
Query 1080 ATCTTCTGGGAGGATCCCAAATACAATCCCAATTGGGTTCGTAATCTAACCGGCCAAGAT 1139
|| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 331 ATATTCTGGGAGGATCCCAAATACAATCCCGACTGGGTTCGTAATCTAACCGGCGAAGAT 390
Query 1140 CTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTAATGACTCGGTACAGAGGGGAGTTC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 391 CTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTAATGACTCGGTACAGAGGAGAGTTC 450
Query 1200 GTGCACTGGGACGTGAGCAACGAGATGCTTCACTTCGACTTCTACGAGAGTC-GACTGGG 1258
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 451 GTGCATTGGGACGTGAGCAACGAGATGCTTCACTTCGACTTCTACGAGAG-CAGACTGGG 509
Query 1259 GAAGAACG 1266
||||||||
Sbjct 510 GAAGAACG 517
Score = 418 bits (226), Expect = 1e-115
Identities = 250/262 (95%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 1299 ATTGACTCGCTGGCGACTCTGTTCTTTAATGATTTCAACGTGGTGGAGACTTGCAGCGAC 1358
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 520 ATTGACTCGTTGGCGACTCTGTTCTTCAATGATTTCAACGTGGTGGAGACTTGCAGCGAC 579
Query 1359 GAGAAGTCGACGGTTGACGAATACATCGCGAGGGTGAGGGAACTCCAACGGTACGACGGC 1418
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 580 GAGAAGTCAACGGTTGACGAATACATCGCCAGGGTGAGGGAACTCCAACGGTACGACGGC 639
Query 1419 ATAAGGATGGATGGAATCGGTCTCGAGGGTCACTTCACGACGCCGAACGTGGCGCTAATG 1478
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 640 ATAAGGATGGACGGAATCGGTCTCGAGGGTCACTTCACGACGCCAAACGTAGCGCTGATG 699
Query 1479 AGAGCAATCCTCGACAAACTCGCGACGCTCCAGCTCCCAATCTGGCTCACCGAAATTGAT 1538
||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 700 AGAGCCATCCTCGATAAACTCGCTACGCTCCAGCTCCCAATCTGGCTCACCGAGATTGAT 759
Query 1539 ATCAGCAGCAGCCTCGACCACC 1560
||||||||||||||||||||||
Sbjct 760 ATCAGCAGCAGCCTCGACCACC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95481436590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5