BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490635
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38690.1 | Symbols: | PLC-like phosphodiesterases superfami... 1531 0.0
> AT4G38690.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr4:18074475-18075765 REVERSE LENGTH=1291
Length=1291
Score = 1531 bits (829), Expect = 0.0
Identities = 955/1016 (94%), Gaps = 7/1016 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGCAAAGGGAAAGGGTTCATCCTCACCAGTCACCAATGGGCTCTCACCTTTCCA 60
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 33 AGAGAGAGCAAAGGGAAAGGGTTAATCCT---CAG----CAATGGGCTCTCACCTTTCCA 85
Query 61 AACAACTCGAGCGGCGAAAAGCAATCTCCACGGAAAAGAAAGCCCTCATCGATCTCGAGA 120
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 86 AACAACTCGAGCGGCGAAAAGCCATCTCCACGGAGAAGAAAGCCCTCACCGATCTCGAGA 145
Query 121 TATCTTGCGGCTGCGAGTTTCCTGGCTGTGATTACATGCCTTCAGATCGTAAAAACTGGA 180
||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 146 AATCGTGCGGCTGCGAGTTTCCGGGGTGTGATTACATGCCTTCCGATCGTAAAAACTGGA 205
Query 181 TGTCCGGCGTTGGACCTGAAAAGCTTCACATCAACAAGATCGTCTGGCCAGGCACGCACG 240
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 206 TGGCCGGCGTTGGACCTGAAAAGCTTCACATCAACAAGATCGTCTGGCCTGGGACGCACG 265
Query 241 ACTCCGCCACCAACAAAATCGGTATACGATTCGTGTCTCGTCCTTTTGCTCAGTGCCAAT 300
|||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 266 ACTCTGCCACCAACAAAATCGGTATCCGATTCGTGTCTCGTCCCTTTGCTAAGTGCCAAT 325
Query 301 CTCTCTCCATCTATAACCAGCTCGTGGCTGGTACTCGAGTCCTTGACATTCGTGTCCAAG 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 326 CTCTCTCCATCTATAACCAGCTCGTGGCGGGTACTCGAGTCCTTGACATTCGTGTCCAAG 385
Query 361 AAGATCGCCGTGTCTGCCACGGTATCCTCAAGACTTATAGCGTCGACGTTGTATTAGCCG 420
||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 386 AAGATCGCCGTGTATGCCACGGTATCCTCAAGACTTATAGTGTCGACGTTGTCTTGGCCG 445
Query 421 ATCTCAAACGGTTTCTGTCCGAAACAGAGTCCGAGATTGTCATTCTTGAGATCAGAACAG 480
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 446 ATCTCAAACGGTTTCTATCCGAAACAGAGTCGGAGATTGTCATTCTTGAGATCAGAACAG 505
Query 481 AGTTTGGACACGAAGATCCACCGGAGTTCGATAAGTATCTTGTGGAACAGCTTGGAGAGC 540
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 506 AGTTTGGACACGAAGACCCACCGGAGTTTGATAAGTATCTTGTGGAACAGCTTGGAGAGC 565
Query 541 ATCTCATTCACCAGGACGATCACGTGTTCACCAAGACAGTCGCTGAGCTGCTTCCCAAGA 600
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 566 ATCTGATTCACCAGGACGATCACGTGTTCTCCAAGACAGTCGCTGAGCTGCTTCCCAAGA 625
Query 601 GAGTGATCTGCGTTTGGAAACCTAGGAAATCGCCTCAGCCTAAGCATGGCGATCCGCTGT 660
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 626 GAGTGATCTGCGTTTGGAAACCGAGGAAATCGCCTCAGCCTAAGCATGGTGATCCTCTTT 685
Query 661 GGAGTGCCGGTTACCTGAAAGACAATTGGATCGATACGGATCTTCCATCGACCAAATTCG 720
|||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 686 GGAGCGCTGGTTACCTTAAAGACAATTGGATCGATACAGATCTTCCATCGACCAAATTCG 745
Query 721 AGAGCAACATCAAGCATTTGAGCCAGCAGCAACCGGCTACTTCCAGGAAATTCTTCTACA 780
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 746 AGAGCAACATCAAGCATTTGAGCCAGCAGCAACCAGCTACTTCAAGGAAATTCTTTTACC 805
Query 781 GGGTGGAGAACACTGTGACGCCGCAGCCCGATAACCCGATAATGTGTGTAAAACCGGTGA 840
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 806 GGGTGGAGAACACAGTGACGCCGCAGCCCGATAACCCAATAATGTGTGTAAAACCGGTGA 865
Query 841 CTAAGAGGATCCATTGCTACGCCAAGGTGTTCATCATCGAGTGTGTAAAGAGAGGATGTG 900
|||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 866 CTAAGAGGATACATTGCTACGCCAAGGTATTCATCATAGAGTGTGTAAAAAGAGGATGTG 925
Query 901 CTGACAAGCTGCAGATATTCTCGACGGATTACATAGATAAAGAATTTGTTGATGCTTGCG 960
|||| || |||||||||||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 926 CTGATAAACTGCAGATATTCTCAACTGATTTCATAGATAATGAATTTGTTGATGCTTGCG 985
Query 961 TTGGGCTCACATTTGCGAGAGCTGAAGGCAAGGCCTGAGGAATGAGCGTGTGTAGA 1016
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 986 TTGGGCTCACCTTTGCGAGAGCTGAAGGTAAGGCCTGAGGAATGAGCGTGTGGAGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5