BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490636
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38710.2 | Symbols: | glycine-rich protein | chr4:18077859-... 944 0.0
> AT4G38710.2 | Symbols: | glycine-rich protein | chr4:18077859-18080083
REVERSE LENGTH=1761
Length=1761
Score = 944 bits (511), Expect = 0.0
Identities = 621/672 (92%), Gaps = 16/672 (2%)
Strand=Plus/Plus
Query 1 AGAAGACGAATCCAACCATGGCGGCTGCTGTATCATCTGTTTGGGCAAAGCCTGGTGCTT 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGAAGAAGAATCCAATCATGGCGGCTGCTGTATCATCTGTTTGGGCAAAGCCTGGTGCTT 124
Query 61 GGGCTCTTGAAGCCGAGGAACACGAAGCTGAACTCAAGCAACAAGCCC-CTCCCTCCACC 119
|||||||||||||||||||||| |||||||| ||||| |||||| ||| ||||| ||| |
Sbjct 125 GGGCTCTTGAAGCCGAGGAACATGAAGCTGAGCTCAAACAACAA-CCCTCTCCCACCAAC 183
Query 120 CAGAAATCCTCTGCCGGAGATTCCTCCGATTTCCCTTCCTTAGCCGCTGCTGCCACCACC 179
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 184 CAGAAATCCTCTGCCGAAGATTCCTCCGATTTCCCTTCCTTAGCCGCTGCAGCGACCACC 243
Query 180 AAAACGAAGAAGAAGAAGGGCCAAACCATATCTCTCGCCGAATTCGCTACCTACGGTTCT 239
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||
Sbjct 244 AAAACGAAGAAGAAGAAGGGCCAAACCATCTCTCTTGCTGAATTCGCTACCTACGGTACT 303
Query 240 GCTAAGGCG--GC-GGC---ACAGACGGAGCGTCTCACTCAGGCTGAGCTGGTATCTCTT 293
|||||||| || ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 304 GCTAAGGCAAAGCCGGCTCCACAGACGGAGCGTCTCACTCAGGCTGAGCTGGTCGCTCTT 363
Query 294 CCGACCGGTCCCCGTGAACGCTCTGCTGATGAGCTTGATAGATCTAAGCTTGGAGGTGGT 353
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 CCGACCGGTCCACGTGAACGCTCTGCTGAGGAGCTTGATAGATCTAAGCTTGGAGGTGGT 423
Query 354 TTCCGGAGCTATGGCGGGGGTCGTTACGGAGATGAATCGTCCAGCTCGCGGTGGGGTTCG 413
|||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||||
Sbjct 424 TTCCGGAGCTATGGTGGTGGTCGTTATGGAGATGAGTCGTCCAGCTCGAGGTGGGGTTCG 483
Query 414 TCTAGGGTTTCGGAGGATGGGGAAAGGAGAGGCGGTGGATTGAACAGGGACAGGGAACCT 473
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 484 TCTAGGGTTTCGGAGGATGGGGAAAGGAGAGGCGGTGGATTCAACCGGGATAGGGAACCT 543
Query 474 AGTAGGGATTCGGGTCCGTCGCGTGCGGATGAGGATGATAACTGGGCTGCCGCCAAGAAA 533
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 AGCAGGGATTCGGGTCCGTCGCGTGCGGATGAGGATGATAACTGGGCCGCCGCCAAGAAA 603
Query 534 CCAATTGGCGGAAGCGGTTTCGAGAGAAGAGAGCGAGGC-GCCGGCGGAGGATTCTTCGA 592
|||||| |||||| ||| ||||||||||||||| ||||| || |||||||||||||||||
Sbjct 604 CCAATTAGCGGAAACGGATTCGAGAGAAGAGAGAGAGGCAGC-GGCGGAGGATTCTTCGA 662
Query 593 ATCTCAGTC-CA----A-GGCTGATGAAGTTGATAGCTGGGTCTCCTCTAAGCCATCGGA 646
||||||||| || | |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 663 ATCTCAGTCTCAGTCCAAGGCTGATGAAGTCGATAGCTGGGTCTCCACTAAGCCATCGGA 722
Query 647 GCCCCGGAGATT 658
||||||||||||
Sbjct 723 GCCCCGGAGATT 734
Score = 658 bits (356), Expect = 0.0
Identities = 545/632 (86%), Gaps = 29/632 (5%)
Strand=Plus/Plus
Query 654 AGATTTGAGAAAAGAGGAAGTTTTGAATCCTTGTCTAGAAACCGGGATTCTCAGTACGGC 713
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 763 AGATTTGAGAAAAGGGGAAGTTTTGAATCCTTGTCTAGAAACCGGGATTCTCAATACGGT 822
Query 714 GGTGGAGGTAGTTCTGATTCAGACACCTGGGGGAGGAGAAGAGAAGAGAGCGGTGGTGCA 773
||||| ||| ||||||| || || |||||||| || ||||||||||| ||||||| |||
Sbjct 823 GGTGGTGGTGGTTCTGAATCGGATACCTGGGGAAGAAGAAGAGAAGAAAGCGGTGCTGCT 882
Query 774 AACGGCGT-GCCACCACCCA-CTGTTGGCTCACGGCCTAGATTGGTGTTACAGCCACGTA 831
|| ||| | ||||||||| | | | ||| ||||| || ||||||||||||||||||||||
Sbjct 883 AATGGC-TCGCCACCACCGAGC-GGTGGTTCACGCCCAAGATTGGTGTTACAGCCACGTA 940
Query 832 CACTTCCCGTGGCCGTTGTGGAGGTCGTTAAGCCGGAGAGTCCGGTCTTGGTCATTGTCG 891
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 941 CACTTCCCGTGGCCGTTGTGGAGGTCGTGAAGCCGGAGAGTCCGGTCTTGGTCATTGTGG 1000
Query 892 AGAAACCTAAAGGTGCCAATCCTTTTGGGAACGCAAGACCTAGAGAGGAAGTTCTGGCTG 951
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGAAACCTAAAGGTGCTAATCCTTTTGGGAACGCAAGACCTAGAGAGGAAGTTCTGGCTG 1060
Query 952 AGAAAGGCCAGGATTGGAAAGAGATTGACGAGAAGCTCGAGGCTGACAAGCTTAAGGACG 1011
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1061 AGAAAGGCCAGGATTGGAAAGAGATTGACGAGAAGCTCGAGGCTGAAAAGCTTAAGGACA 1120
Query 1012 TTGCTGCAGCCATTGAGAAGCCTGATGAGAAATCTCCAGGGAAGATGGGGGGCTTTGGTC 1071
||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 1121 TTGCTGCAGCCATGGAGAAGCCTAATGAGAAATCTACAGGGAAGATGGG---CTTTGGTC 1177
Query 1072 TTGGCAATGGCCGCAAAGACGATGAACGTACTGAGAGAAGTTGGAGGAAAAGCACGGAGC 1131
||||||||||||| |||||||| ||||||| ||| ||||||||||||||||| |
Sbjct 1178 TTGGCAATGGCCGTAAAGACGAGGAACGTATTGAAAGAAGTTGGAGGAAAAGTTTTTCTC 1237
Query 1132 -A-AT-C-TGAGGA-GGAACCAGCTGTA--GAAGA-GG--C-TAA-GAAGGAAGA-GACT 1178
| || | | | | |||| | ||| ||| | || | | || ||| || | ||
Sbjct 1238 TACATTCAT-AC-ATGGAAGTTGATGTCTTGAACACGGAGCATTCTGA-GGAGGATG-CT 1293
Query 1179 ---GAGG-GCAAACCGGCTGTagaagaggctaagaaggaagagagtgagaacgaaccagc 1234
|||| | || || |||||||||| ||| ||||||||||||| |||| || |||| ||
Sbjct 1294 CAAGAGGAGGAA-CCAGCTGTAGAAGGGGCAAAGAAGGAAGAGACTGAGGACAAACCGGC 1352
Query 1235 tgtagaagaggctaagaaggaagagaCGGAGG 1266
|||||||||||||||||||||||| || ||||
Sbjct 1353 TGTAGAAGAGGCTAAGAAGGAAGAAACTGAGG 1384
Score = 505 bits (273), Expect = 6e-142
Identities = 380/427 (89%), Gaps = 26/427 (6%)
Strand=Plus/Plus
Query 1135 CTGAGGAGGAACCAGCTGTAGAAGAGGCTAAGAAGGAAGAGACTGAGGGCAAACCGGCTG 1194
||||||| |||| |||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 1337 CTGAGGACAAACCGGCTGTAGAAGAGGCTAAGAAGGAAGAAACTGAGGGTGAACAGGCTG 1396
Query 1195 Tagaagaggctaagaaggaagagagt-gagaacgaaccagctgtagaagaggctaagaag 1253
|||||||||||||||||||||||| | | | |||||| |||||||||||||| ||||||
Sbjct 1397 TAGAAGAGGCTAAGAAGGAAGAGACTGGTG-GCGAACCGGCTGTAGAAGAGGCAAAGAAG 1455
Query 1254 gaagagaCGGAGGACAAAATCTAAAGAGTCAAAAGGCATTTTTGTGGATTGTGATAGAGC 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GAAGAGACGGAGGACAAAATCTAAAGAGTCAAAAGGCATTTTTGTGGATTGTGATAGT-- 1513
Query 1314 AAGTTGGGTTCTCGAAGTTTAGCTTCTGAGAATTTGTGTTGTTTAATTTGGATAAGTTAA 1373
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 ---TTGGGTTCTTGAAGTTTAGCTTCTGAGAATTTGTGTTGTTTAATTTGGATAAGTTAA 1570
Query 1374 AAGTTGTGTGGGG-AACTCGATAGAAAATTTTGGTAGGGTCTTTTT----ATAATCTCTC 1428
||||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||
Sbjct 1571 --GTTGTGTGGGGGAACTCTAGAGAAAATTTTGGTAGGGTCTTTTTTTTTATAATATCTC 1628
Query 1429 TCTGTCTCTCAGTCTTGTTTGC-A--TACTCTGTTGCAAATTTTTAGGGTTTTGGG-TGT 1484
||||||||| | || ||| | | ||||||||||||| |||||||||||||||| |||
Sbjct 1629 TCTGTCTCTT--T-TT-TTTACCACATACTCTGTTGCAA-TTTTTAGGGTTTTGGGGTGT 1683
Query 1485 CTTTTATATTTTTTACGAGTTGTACAATTTCATTATTGGTTTAC-TCTTTCTTTGAATTT 1543
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1684 CTTTTAT-TTTTT-ACGAGTTGTACAATTTCATTATTGGTTTAAATCTGTCTTTGAATTT 1741
Query 1544 GGGAGCG 1550
|||||||
Sbjct 1742 GGGAGCG 1748
Score = 111 bits (60), Expect = 2e-23
Identities = 79/87 (91%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 1135 CTGAGGAG-GAACCA-GCTGTAGAAGAGGCTAAGAAGGAAGAGACTGAG-GGCAAACCGG 1191
|||||| | ||| || ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1379 CTGAGG-GTGAA-CAGGCTGTAGAAGAGGCTAAGAAGGAAGAGACTG-GTGGCGAACCGG 1435
Query 1192 CTGTagaagaggctaagaaggaagaga 1218
||||||||||||| |||||||||||||
Sbjct 1436 CTGTAGAAGAGGCAAAGAAGGAAGAGA 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5