BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490637
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38730.1 | Symbols: | Protein of unknown function (DUF803) ... 1659 0.0
AT2G21120.1 | Symbols: | Protein of unknown function (DUF803) ... 883 0.0
> AT4G38730.1 | Symbols: | Protein of unknown function (DUF803)
| chr4:18080233-18082537 REVERSE LENGTH=1464
Length=1464
Score = 1659 bits (898), Expect = 0.0
Identities = 960/991 (97%), Gaps = 0/991 (0%)
Strand=Plus/Plus
Query 21 CGATGGTGTCGGACAATGAGATGGGTCTGGCGTTAGCTGTGTCGTCGAGTGTCTTCATAG 80
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 231 CGATGGTGTCGGACAATGAGATGGGTCTGGTATTAGCTGTGTCGTCGAGCGTCTTCATAG 290
Query 81 GTTCCAGCTTCATTTTGAAGAAGAAAGGTCTCAAGCGTGCTGCTGCTAATGGCACCCGCG 140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 291 GTTCCAGCTTCATTTTGAAGAAGAAAGGTCTCAAGCGCGCTGCTGCTAATGGCACCCGCG 350
Query 141 CTGGGTTCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAACAA 200
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTGGTTTCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAACAA 410
Query 201 TGACTTTTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCGCCGGCTGTACTAGTCA 260
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 411 TGACTTTTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCACCTGCTGTACTAGTCA 470
Query 261 CTCCTCTTGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAGACG 320
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTCCTCTTGGCGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAGACG 530
Query 321 AAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGA 590
Query 381 TCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTTGAAGAAATCTGGAAACTAG 440
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 591 TCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTAGAAGAAATCTGGAAACTAG 650
Query 441 CAATGCAGCCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATTGTCCTGGCTTTGA 500
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 651 CAATGCAACCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATAGTCCTTGCTTTGA 710
Query 501 TTCTGTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTTTATATCGGAATTTGTT 560
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 711 TTCTCTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTGTATATCGGAATTTGTT 770
Query 561 CATTGATGGGTTCTCTTACAGTTATGAGCATAAAGGCTGTAGGGATTGCGATAAAGTTAA 620
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 771 CATTGATGGGTTCTCTCACAGTTATGAGCATCAAGGCTGTAGGGATTGCCATAAAGTTAA 830
Query 621 CATTTGAAGGGATAAACCAGATTTGGTATCCAGAGACTTGGTTTTTTGCCATGGTTGCAG 680
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 831 CATTTGAAGGGATAAACCAGATCTGGTATCCAGAGACTTGGTTTTTTGCCATGGTTGCAG 890
Query 681 CAATATGTGTGGTTATGCAAATGATTTACCTAAACAAGGCGCTGGACACTTTCAACGCAG 740
|||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 891 CAATCTGTGTTGTTATGCAAATGATTTACCTCAACAAGGCGCTGGACACATTCAACGCAG 950
Query 741 CAATTGTTTCTCCAATTTATTATGTGATGTTCACAACACTCACAATTGTTGCTAGTGCAA 800
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 951 CAATTGTTTCTCCAATCTATTATGTGATGTTCACAACACTCACAATTGTCGCTAGTGCAA 1010
Query 801 TCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGATTTGTGGAT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGATTTGTGGAT 1070
Query 861 TCATCACAGTGCTTACAGGAACAGTTATACTCCATGCGACAAGAGAAGAGGAACAAGCTT 920
|||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 1071 TCATCACAGTGCTTACAGGAACGGTTATACTCCATTCCACGAGAGAAGAGGAACAAGCTT 1130
Query 921 CGCCTCGAAGAATGAGATGGCAAGATTCAGGGAAGAGCTTTGACGAAGAACATTTGACAA 980
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1131 CGCCACGACGAATGAGATGGCAGGATTCAGGGAAGAGCTTTGACGAAGAACATTTGACAA 1190
Query 981 GTTTGTACAGTCCTGAATATTAGGAAGGTAA 1011
|||||||||||||||||||||||||||||||
Sbjct 1191 GTTTGTACAGTCCTGAATATTAGGAAGGTAA 1221
> AT2G21120.1 | Symbols: | Protein of unknown function (DUF803)
| chr2:9051748-9054613 REVERSE LENGTH=1689
Length=1689
Score = 883 bits (478), Expect = 0.0
Identities = 838/1008 (83%), Gaps = 40/1008 (4%)
Strand=Plus/Plus
Query 23 ATGGTGTCGGACAATGAG-ATGGGTCTGGCGTTAGCTGT-GTCGTCGAGTGTCTTCATAG 80
|||| | ||||||||| | | |||| || ||||||| | |||| ||||| ||||| |
Sbjct 348 ATGGAGACGGACAATGGGAAGGGGT-TGATACTAGCTGTAG-CGTCAAGTGTTTTCATTG 405
Query 81 GTTCCAGCTTCATT-TTGAAGAAGAAAGGTCTCAAGCGTGCTGCTGCTAATGGCACCCGC 139
|||||||||||||| || |||||||||||||| ||||| |||| ||||| |||||||||
Sbjct 406 GTTCCAGCTTCATTCTT-AAGAAGAAAGGTCTTAAGCGAGCTGGTGCTATTGGCACCCGA 464
Query 140 GCTGGGT-TCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAAC 198
|| || | | ||||| ||||| ||||| |||||||| |||||||||| ||| |||| ||
Sbjct 465 GCAGGATAT-GGAGGCTATACTTATTTATTAGAGCCGCTTTGGTGGGCAGGGATGGTTAC 523
Query 199 AATGACTT-TTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCGCCGGCTGTACTAG 257
|||| || |||||||| ||| ||||||||||||||| ||||||| || |||||||| |
Sbjct 524 TATGA-TTGTTGGAGAAGCTGCAAACTTTGTGGCTTACATTTATGCACCAGCTGTACTCG 582
Query 258 TCACTCCTCTTGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAG 317
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 583 TTACTCCTCTCGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTATT-G 641
Query 318 ACG-AAAAACTTAGGAAAATGGGAGTT-TGGGGATGTGTTTGTTGCATTGT-GGGCTCAG 374
| | ||||||||| ||||||||| ||| | || |||||| | ||||||||| ||| || |
Sbjct 642 AAGGAAAAACTTAAGAAAATGGGGGTTCTCGG-ATGTGTGTCTTGCATTGTTGGG-TCTG 699
Query 375 TTATGATCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTTGAAGAAATCTGGA 434
|| | || || |||||||||||| |||| |||||||| ||||| ||||| ||||| ||||
Sbjct 700 TTGTTATTGTTATACACGCACCTAAGGAACAGACTCCTAATTCCGTTGAGGAAATATGGA 759
Query 435 AACTAGCAA-TGCAGCCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATTGTCCTG 493
| || || | | ||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 760 ATCTGGCTACT-CAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTT 818
Query 494 GCTTTGATTCTGTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTTTATATCGGA 553
||||| |||||| | | |||||| || ||||||||||| |||||||| |||||||| |||
Sbjct 819 GCTTTAATTCTGCATTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATTGGA 878
Query 554 ATTTGTTCATTGATGGGTTCTCTTACAGTTATGAGCATAAAGGCTGTAGGGATTGCGATA 613
|| ||||| || |||||| |||| || |||||||||||||| ||| | || |||||||||
Sbjct 879 ATCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAAGCTATTGGAATTGCGATA 938
Query 614 AAGTTAACATTTGAAGGGA-TAAACCAGATTTGGTATCCAGAGACTTGGTTTTTTGCCAT 672
|| |||||| | || |||| ||| |||||| |||||||| |||| ||| |||||| |||
Sbjct 939 AAATTAACAATGGA-GGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCAT 997
Query 673 GGTTGCAGCAA-TATGTGTGGTTATGCAAATGATTTACCTAAACAAGGCGCTGGACACTT 731
|||||||| || | ||||| |||| ||| ||||||||||||| ||||| ||||||| |
Sbjct 998 GGTTGCAGTAACT-TGTGTCGTTACACAATTGATTTACCTAAATAAGGCTTTGGACACAT 1056
Query 732 TCAACGCAGCAATTGTTTCTCCAATTTATTATGTGATGTTCACAACACTCACAATTGTTG 791
|||||||||| |||||||||||| | || ||||| ||||||||||| |||||||||||||
Sbjct 1057 TCAACGCAGCCATTGTTTCTCCAGTATACTATGTAATGTTCACAACCCTCACAATTGTTG 1116
Query 792 CTAGTGCAATCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGA 851
|||||||||| ||||||||||||||| ||||||| || ||| |||| |||||||||||
Sbjct 1117 CTAGTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAG- 1175
Query 852 TT-TGTGGATTCATCACAGTGCTTACAGGAACAGTTATACTCCATG-CGACAAGAGAAGA 909
|| |||||||||||||| ||||| ||||| ||| | |||||||||| | |||||||||||
Sbjct 1176 TTATGTGGATTCATCACTGTGCTCACAGGGACAATGATACTCCATGGC-ACAAGAGAAGA 1234
Query 910 GGAACAAGCTTC--GC--CT-C-GAAGAATG-A-GATGGCAAGATTCAGGGAA-GAGCTT 960
||||||| | | || || | ||| | || | ||||| | || || | ||| |||| |
Sbjct 1235 GGAACAA-CAACAAGCTTCTTCAGAACA-TGTAAGATGGTACGACTC-GAGAAAGAGCAT 1291
Query 961 TGA-CGAAGAACATTTGACAAGTTTGTACAGTCCTGAATATTAGGAAG 1007
|| ||||||||||||| ||| |||||||||||||||| |||||||
Sbjct 1292 -GAACGAAGAACATTTGGTAAGCCTGTACAGTCCTGAATACTAGGAAG 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5