BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490643
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38790.1 | Symbols: | ER lumen protein retaining receptor f... 1574 0.0
AT2G21190.1 | Symbols: | ER lumen protein retaining receptor f... 883 0.0
> AT4G38790.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr4:18111361-18113206 FORWARD LENGTH=1116
Length=1116
Score = 1574 bits (852), Expect = 0.0
Identities = 959/1009 (95%), Gaps = 14/1009 (1%)
Strand=Plus/Plus
Query 1 ACCTTTTTCACTTTTGCCGagaaaatcagagacagaagaagaagaagaagaagaaaagcg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ACCTTTTTCACTTTTGCCGAGAAAATCAGAGAC---------AGAAGAAGAAGAAAAGCG 51
Query 61 aaaaaaagGCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGCGGTGTGGTCATGG 120
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 52 AAAAAAA-GCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGTGGTGTGGTCATGG 110
Query 121 GTAAGGAGACAACCTCCAAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 180
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 GTTAGGAGACAACCTCCGAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 170
Query 181 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 230
Query 241 GTTCATTCCATCGGGATCTGTGTTCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 231 GTTCATTCCATCGGGATCTGTGTGCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 290
Query 301 GGATTGTCACTGAAATCCCAGGAGCTTACGGCGATATTTCTAGCTGTCAGGCTGTATTGT 360
||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 291 GGATTGTCACTGAAATCTCAGGAGCTTACGGCGATATTTTTAGCTGTTAGGCTGTATTGT 350
Query 361 AGCTTTGTAATGGAATATGATATACATACTATTCTGGACTTGGCTACTTTGGGAACAACT 420
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 351 AGCATTGTAATGGAATATGATATACATACCATTCTTGACTTGGCTACTTTGGGAACAACT 410
Query 421 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 470
Query 481 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGTTTTAGCTGTGTTCATCCATCCA 540
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 471 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGCATTAGCTGTGTTCATCCATCCA 530
Query 541 TCCACCTCTCATCACATATTAAACAGGATTTCATGGGCATTATGTGTATACCTTGAAGCT 600
|| ||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 531 TCGACCTCTCATAACATAATAAACAGAATTTCATGGGCTTTATGTGTATACCTTGAAGCT 590
Query 601 GTTTCTGTTCTGCCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 660
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTTTCAGTACTACCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 650
Query 661 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 710
Query 721 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTTTGGCCATCA 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCA 770
Query 781 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 830
Query 841 GTCCAAAGCGTTTTCGGAGGGCAGCTTGTTCTCCGGCTTCCGTCTGGAGTAGTTTAAGTT 900
||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 831 GTCAAAAGCGTTTTCGGAGGCCAGCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTT 890
Query 901 AAAAAGATAGAAATACTCAAATGATGTCC-G--ACGAGCTTGCCGGAAATTCTTATCGG- 956
||||||||||||||| | || ||||||| | | ||||||| |||||||||| || ||
Sbjct 891 CAAAAGATAGAAATACCCCAACGATGTCCTGCGATGAGCTTGACGGAAATTCTAATTGGG 950
Query 957 AAAGACAGCTCAGTTTTTCTTTACCTCTGATTTCACCGTTTATGTGTCT 1005
||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 951 AAAGATAGCTCAATTTTTCTTTACCTCTGATTTCATCGTTTATGTGTCT 999
> AT2G21190.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr2:9080865-9082904 FORWARD LENGTH=1123
Length=1123
Score = 883 bits (478), Expect = 0.0
Identities = 711/824 (86%), Gaps = 14/824 (2%)
Strand=Plus/Plus
Query 90 GAAGACTCCGATCCACGCGGTGTGGTCATGGGTAAGGAGACAACCTCCAAAGGTGAAGGC 149
||||||||||||||||||||| | | ||||||| ||||| || |||||||||||||| ||
Sbjct 54 GAAGACTCCGATCCACGCGGTTTCGACATGGGTGAGGAGGCAGCCTCCAAAGGTGAAAGC 113
Query 150 TTTTCTCGCCGTGGTCA-CTGGCATGGCGGCT-TTGGTTCTTCTCAGATTCATTGTTCAC 207
||| || ||||| || | |||||||||||||| || ||||| |||| | |||| ||||||
Sbjct 114 TTTCCTTGCCGTCGT-ATCTGGCATGGCGGCTCTT-GTTCTCCTCAAACTCATCGTTCAC 171
Query 208 GATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTTCTC 267
|||||||||||||||||||||||||| || ||||||||||| || || |||| ||||||
Sbjct 172 GATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTT 231
Query 268 ATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCCCAGGAGCTT 327
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||
Sbjct 232 ATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTT 291
Query 328 ACGGCGATATTTCTAGCTGTCAGGCTGTATTGTAGCTTTGTAATGGAATATGATATACAT 387
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 292 ACGGCGATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGATATACAT 351
Query 388 ACTATTCTGGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTC 447
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 352 ACCATTCTGGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATATATGATCCGTTTT 411
Query 448 AAGTT-AAGAGCTAGTTACATGGAGGACAAAGACAACTTTC-CTCTCTATTATGTGCTTG 505
|| | || | ||| |||||||||||| ||||||||||| | |||||||||||||||| |
Sbjct 412 AACCTCAAAA-CTACTTACATGGAGGAAAAAGACAACTT-CGCTCTCTATTATGTGCTGG 469
Query 506 CGCCCTGTGTTGTTTTAGCTGTGTTCATCCATCCATCCACCTCTCATCAC-ATATTAAAC 564
||||||||||||| ||||||| | || |||||||| || || || || ||||| ||
Sbjct 470 CGCCCTGTGTTGTGCTAGCTGTATGGATTCATCCATCAACGTCACA-CAATATATTGAAT 528
Query 565 AGGATTTCATGGGCATTATGTGTATACCTTGAAGCTGTTTCTGTTCTGCCTCAGCT-ACG 623
|| || || |||| ||| ||||| ||||| ||||||||||| || ||||| ||| | | |
Sbjct 529 AGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGTTGA-G 587
Query 624 AGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGG 683
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 588 AGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGG 647
Query 684 AGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTG-TGGACACGCGGGGAC 742
||||||||| || | |||||||| ||||||||||||||| | | ||||||||| ||||
Sbjct 648 AGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGAT-GATGGACACGCACGGAC 706
Query 743 GGTTGCTTGTAGCATTGGGTTATGGATTTTGGCCATCAATGGTTCTGATCTCAGAAATTG 802
| ||||||||| ||||||||||| | |||||||| |||||| | ||||||||||| |
Sbjct 707 GACTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATAG 766
Query 803 TTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCCAAAGCGTTTTCGGAGGGC 862
| ||||| ||||| |||||||||||||||||||||||||| |||| |||||||| || |
Sbjct 767 TCCAAACATTCATATTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCC 826
Query 863 AGCTTGTTCTCCGGCTTCCGTCTGGAGTAGTTTAAGTTAAAAAG 906
|||||||||| ||||||| ||||| || || ||||||| ||||
Sbjct 827 AGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATAAAG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5