BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490646
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38810.2 | Symbols: | Calcium-binding EF-hand family protei... 2113 0.0
> AT4G38810.2 | Symbols: | Calcium-binding EF-hand family protein
| chr4:18115283-18119077 REVERSE LENGTH=1669
Length=1669
Score = 2113 bits (1144), Expect = 0.0
Identities = 1444/1576 (92%), Gaps = 72/1576 (5%)
Strand=Plus/Plus
Query 73 TTTGGGGTGTGTCAAGTTTCTGTTTTTCCTTTTCTCGTGCTTCCATCACGAGATCTCTCA 132
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 98 TTTTGGGTGTGTCAAGTTTCTGTTCTTCCTTTTCTCGTGCTTCCATCACGAGATATCTCA 157
Query 133 CAAGGCTCCCGCGACTCAAGAAAGATAAAG----AGAAAG-A-AAG--AAGATTCCATAA 184
|||||||| ||||||||||||||| ||||| |||||| | ||| ||||||||||||
Sbjct 158 CAAGGCTCTCGCGACTCAAGAAAGGTAAAGATAAAGAAAGAAGAAGCAAAGATTCCATAA 217
Query 185 ATGGACATGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATGGACTTGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 277
Query 245 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 337
Query 305 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 397
Query 365 ATCGGCGCCGCTCTTGGTTTGCCTGCTCAAGGCACTTCTCCTGATTCTGATCACATCTAC 424
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 398 ATCGGCGCTGCTCTTGGTTTGCCTGCTCAAGGAACTTCTCCTGATTCCGATCACATCTAC 457
Query 425 TCCGAGGTTCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTT 484
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TCCGAGGTCCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTC 517
Query 485 AAAGAAGTGTTGTCGGACATTTTGCTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 518 AAAGAAGTGTTGTCGGACATTTTGTTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 577
Query 545 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATACGAA 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 578 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATATGAA 637
Query 605 ATCGA-ACTTGTTTCTGTCTTCTCAGAGCTCTCCAGTTGCGAGGACGCATCGCTCCGTGA 663
||||| | ||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct 638 ATCGAGA-GCATTTCTGTTTTCTCAGAGCTCTCCAGTAGCAAGGACGCATCGCTCCGTGA 696
Query 664 TTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACGA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACGA 756
Query 724 CCCATGGGTGATGAGCAACATTGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAGA 783
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 757 CCCATGGGTGATGAGCAACATCGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAGA 816
Query 784 TAAGAGAGAGAAGAGCGCGTCTCAGGAGAAATTCTTGGAGGCATTCAAGAGAGTCGTGGA 843
||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 817 TAAAAGAGAGAAAAGCGCGTCTCAGGAGAGATTCTTGGAAGCATTCAAGAGAGTCGTGGA 876
Query 844 GAGAGTGGCTCAGCGTCTCAATGAACAACCCGTGATCGTTGCTCACAGCGAAAATA-CTT 902
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 877 GAGTGTGGCTCAGCGTCTCAATGAACAGCCCGTGATCGTTGCTCACAGCGAAAACACCTT 936
Query 903 TCGATGGGAGCGGTGTCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTAA 962
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 T-GATGGGAGCGGTATCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTAA 995
Query 963 ACGTTG-CATTGGAGACGATTCCAAAAGACCGTCATGGTAAGGTGTCTAAAGAATATCTA 1021
|||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 996 ACGTTGCCA-TGGAGACGATTCCAAAAGACCGTCAGGGTAAGGTGTCTAAAGGATATCTA 1054
Query 1022 CGAGCTGTGCTTGACACTGTTGCACCATCTGCGACTTTACCACCGATAGGCGCTGTGTCC 1081
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1055 CGAGCTGTGCTTGACACTGTTGCACCATCGGCCACTTTACCACCAATAGGCGCTGTGTCC 1114
Query 1082 CAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATATG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1115 CAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATGTG 1174
Query 1142 GTGAATGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCAG 1201
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GTGAAGGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCAG 1234
Query 1202 CTTGAGGGTAATCCGATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTCG 1261
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CTCGAGGGTAGTCCCATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTCG 1294
Query 1262 GCTACATTTCTGCAGCCGACTTTGAATGAAACAGAGGAGCCTTCAACCTAATCAT---A- 1317
||||| ||||||| | | |||| || ||| |||||||||||||||| |||||||| |
Sbjct 1295 GCTACCTTTCTGCCGTCAACTTCGACTGATACAGAGGAGCCTTCAAACTAATCATAGAAG 1354
Query 1318 -G----A-C-G-----G--G-----AATGTTATATGG-TTT--C---AGAGTTTTTTACC 1352
| | | | | | |||||||||||| ||| | ||| | ||||||
Sbjct 1355 GGAATAAGCAGCACTAGCAGCAACAAATGTTATATGGTTTTGACTTTTGAG-TGTTTACC 1413
Query 1353 CCCAAAAGTTTTAGAGTAATGAGGAAAACCGTC-TTACTTTGCAGATGTATAATATTGAA 1411
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 1414 CCCAAAAGTTTTAGATTAATGAGGAAAACCGTCTTTACTTT-CAGATGTATAAAATTGAA 1472
Query 1412 AGTTTGGGGTTTCCTCTTGTGGGTGTGGTGATTATACTCACG-Ctttttcttttcttttt 1470
|||||||||||||||||||| |||||||||||| |||||| | |||||| |||| |||||
Sbjct 1473 AGTTTGGGGTTTCCTCTTGTTGGTGTGGTGATTCTACTCATGCCTTTTT-TTTTTTTTTT 1531
Query 1471 CTAATTACCAAGGGATGCAATGTTTACTGTG-TTTTT-ATTTCGTTATAAA-----TT-- 1521
||||| |||| ||||||||||||||||| || ||||| ||||||||| ||| ||
Sbjct 1532 CTAATGACCATGGGATGCAATGTTTACTCTGTTTTTTAATTTCGTTA-AAATTTGTTTAC 1590
Query 1522 G-TT-T-A--C--G--T---T-T-ATGAAACATTTGAGTTATCTTTAAAAGTGGGAAATA 1567
| || | | | | | | | ||||||||||||||||||||||||||||| ||||||
Sbjct 1591 GTTTATGATGCTTGAATGGCTATGATGAAACATTTGAGTTATCTTTAAAAGTGTGAAATA 1650
Query 1568 AAAATTGTGAAGTTAA 1583
|| ||| |||||||||
Sbjct 1651 AATATTCTGAAGTTAA 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5