BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490648
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein fa... 523 4e-148
AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 523 4e-148
> AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18121526-18122010 FORWARD LENGTH=485
Length=485
Score = 523 bits (283), Expect = 4e-148
Identities = 332/355 (94%), Gaps = 6/355 (2%)
Strand=Plus/Plus
Query 38 aaaaaaaTGGGCGTGGTCCGAGGTCTTATGAGTGCAAAGAAGATCTTTCAAGGCCGATCA 97
||||||||||| ||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 81 AAAAAAATGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCA 140
Query 98 ATGACGGCTTCGACACCAAAGGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 157
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 200
Query 158 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 260
Query 218 TCCGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGTCCTGAA 277
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 261 TCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTA 320
Query 278 GATACTTTTATCACTGTCACTTCTCAGCTTCATTAGTTCCAATTCACAAGGATCACATAT 337
||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 321 GATACATTTATCACCGTCACTTCTCAGCTTCATTAGATCCAATTCACAAGGATCACATAT 380
Query 338 ATGTAACAAttttttttAGATCATTA----GATTTAGAAGATATTTAGAACCCAG 388
|||||||||||||| || |||||| ||| |||||||||||||||||||||
Sbjct 381 ATGTAACAATTTTTG--AGGTCATTAATTAGATGTAGAAGATATTTAGAACCCAG 433
> AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:18121543-18121975 REVERSE LENGTH=433
Length=433
Score = 523 bits (283), Expect = 4e-148
Identities = 332/355 (94%), Gaps = 6/355 (2%)
Strand=Plus/Minus
Query 38 aaaaaaaTGGGCGTGGTCCGAGGTCTTATGAGTGCAAAGAAGATCTTTCAAGGCCGATCA 97
||||||||||| ||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 370 AAAAAAATGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCA 311
Query 98 ATGACGGCTTCGACACCAAAGGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 157
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 310 ATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 251
Query 158 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 191
Query 218 TCCGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGTCCTGAA 277
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 190 TCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTA 131
Query 278 GATACTTTTATCACTGTCACTTCTCAGCTTCATTAGTTCCAATTCACAAGGATCACATAT 337
||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 GATACATTTATCACCGTCACTTCTCAGCTTCATTAGATCCAATTCACAAGGATCACATAT 71
Query 338 ATGTAACAAttttttttAGATCATTA----GATTTAGAAGATATTTAGAACCCAG 388
|||||||||||||| || |||||| ||| |||||||||||||||||||||
Sbjct 70 ATGTAACAATTTTTG--AGGTCATTAATTAGATGTAGAAGATATTTAGAACCCAG 18
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18297460636
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5