BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490648 Length=388 Score E Sequences producing significant alignments: (Bits) Value AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein fa... 523 4e-148 AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 523 4e-148 > AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein family | chr4:18121526-18122010 FORWARD LENGTH=485 Length=485 Score = 523 bits (283), Expect = 4e-148 Identities = 332/355 (94%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 38 aaaaaaaTGGGCGTGGTCCGAGGTCTTATGAGTGCAAAGAAGATCTTTCAAGGCCGATCA 97 ||||||||||| ||| |||||||||||||| | |||||||||||||||||||| |||||| Sbjct 81 AAAAAAATGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCA 140 Query 98 ATGACGGCTTCGACACCAAAGGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 157 ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 141 ATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 200 Query 158 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 260 Query 218 TCCGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGTCCTGAA 277 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 261 TCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTA 320 Query 278 GATACTTTTATCACTGTCACTTCTCAGCTTCATTAGTTCCAATTCACAAGGATCACATAT 337 ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 321 GATACATTTATCACCGTCACTTCTCAGCTTCATTAGATCCAATTCACAAGGATCACATAT 380 Query 338 ATGTAACAAttttttttAGATCATTA----GATTTAGAAGATATTTAGAACCCAG 388 |||||||||||||| || |||||| ||| ||||||||||||||||||||| Sbjct 381 ATGTAACAATTTTTG--AGGTCATTAATTAGATGTAGAAGATATTTAGAACCCAG 433 > AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18121543-18121975 REVERSE LENGTH=433 Length=433 Score = 523 bits (283), Expect = 4e-148 Identities = 332/355 (94%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 38 aaaaaaaTGGGCGTGGTCCGAGGTCTTATGAGTGCAAAGAAGATCTTTCAAGGCCGATCA 97 ||||||||||| ||| |||||||||||||| | |||||||||||||||||||| |||||| Sbjct 370 AAAAAAATGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCA 311 Query 98 ATGACGGCTTCGACACCAAAGGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 157 ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 310 ATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 251 Query 158 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 191 Query 218 TCCGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGTCCTGAA 277 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 190 TCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTA 131 Query 278 GATACTTTTATCACTGTCACTTCTCAGCTTCATTAGTTCCAATTCACAAGGATCACATAT 337 ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 130 GATACATTTATCACCGTCACTTCTCAGCTTCATTAGATCCAATTCACAAGGATCACATAT 71 Query 338 ATGTAACAAttttttttAGATCATTA----GATTTAGAAGATATTTAGAACCCAG 388 |||||||||||||| || |||||| ||| ||||||||||||||||||||| Sbjct 70 ATGTAACAATTTTTG--AGGTCATTAATTAGATGTAGAAGATATTTAGAACCCAG 18 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18297460636 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5