BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490649
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38830.1 | Symbols: CRK26 | cysteine-rich RLK (RECEPTOR-like... 1858 0.0
> AT4G38830.1 | Symbols: CRK26 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 26 | chr4:18122326-18124943 FORWARD LENGTH=2011
Length=2011
Score = 1858 bits (1006), Expect = 0.0
Identities = 1128/1187 (95%), Gaps = 7/1187 (1%)
Strand=Plus/Plus
Query 772 CAAGGGGATAAAAACAGAGGTGTACCTCCTAAAGCTTTGATCTTTGCTGCTGCTTCAGTT 831
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 830 CAAGGGGATAAAAACAGAGGTGTA---CCTAAAGCTTTGATCTTTGCTTCTGCTTCAGTT 886
Query 832 GCTATTGTTGTCTTACTTATAGTATTCTTAGTCGTTTTCCTAAGGCTGAGAAGGAAGAAG 891
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 887 GCTATTGTTGTCTTATTTATAGTACTCTTAGTCGTTTTCCTAAAGCTGAGAAGGAAGGAG 946
Query 892 AAGAACAAAAATTCGGAACATAGACATGAAAATGAAAATATTAGCACGGATTCAATGAGA 951
|| | || |||||| ||| | | |||||||||||||||||||||||||||||| |||| |
Sbjct 947 AACATCAGAAATTCAGAAAACAAACATGAAAATGAAAATATTAGCACGGATTCCATGAAA 1006
Query 952 TTTGATTTCAGTGTATTACAAGATGCAACAAGTTATTTTTCATTAGAAAATAAACTTGGA 1011
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1007 TTTGATTTCAGTGTATTACAAGATGCAACAAGTCATTTTTCACTAGAAAATAAACTTGGA 1066
Query 1012 GAAGGTGGATTCGGAGCAGTTTATAAGGGTGTGCTTTCTGGTGGACAAAAAATAGCGGTG 1071
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1067 GAAGGTGGATTCGGAGCAGTTTATAAGGGTGTGCTTTCTGATGGACAAAAAATAGCGGTG 1126
Query 1072 AAAAGGTTGTCCAAAAATGCACAACAAGGTGAAACCGAATTCAAAAACGAGTTCTTGTTG 1131
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1127 AAAAGGTTGTCGAAAAATGCACAACAAGGTGAAACCGAATTCAAGAACGAGTTCTTGTTG 1186
Query 1132 GTGGCTAAGCTTCAACATCGTAATCTCGTGAAGCTCTTAGGTTACTCAATAGAAGGAACT 1191
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GTGGCTAAGCTTCAGCATCGCAATCTCGTGAAGCTCTTAGGTTACTCAATAGAAGGAACT 1246
Query 1192 GAAAGGCTTCTTGTCTATGAGTTCCTCCCACACACTAGTCTCGACAAGTTCATCTTCGAA 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GAAAGGCTTCTTGTCTATGAGTTCCTCCCACACACTAGTCTCGACAAGTTCATCTTCGAT 1306
Query 1252 CCGATCCAGGGCAA-GCAATTGGAGTGGGATATTA-GATACAAAATCATTGGAGGTGTAG 1309
|||||||| || || | ||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1307 CCGATCCAAGGTAATG-AATTGGAGTGGGAAAT-ACGATACAAAATCATTGGAGGTGTAG 1364
Query 1310 CTCGAGGACTTCTTTATCTTCATCAAGATTCTCGTCTGCGGATTATACACCGTGATCTTA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CTCGAGGACTTCTTTATCTTCATCAAGATTCTCGTCTGCGGATTATACACCGTGATCTTA 1424
Query 1370 AAGCTAGTAACATATTATTAGACGAGGAAATGACCCCAAAAATTGCAGATTTTGGAATGG 1429
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1425 AAGCTAGTAACATATTATTAGACGAGGAAATGACCCCAAAAATCGCAGATTTCGGAATGG 1484
Query 1430 CTAGGCTATTCGATATGGACCACACAACTCAACGCTACACAAATAGGATCGTTGGGACTT 1489
||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1485 CTAGGCTTTTCGATATCGACCACACGACTCAACGCTACACGAATAGGATCGTTGGGACTT 1544
Query 1490 TTGGATACATGGCTCCAGAGTATGTAATGCACGGCCAGTTCTCGTTTAAGACAGATGTTT 1549
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1545 TTGGATACATGGCTCCAGAGTATGTAATGCACGGACAGTTCTCGTTCAAGACAGATGTTT 1604
Query 1550 ACAGTTTCGGAGTTTTGGTTCTTGAGATCATCAGTGGTAAGAAAAACAGTTGTTTCAGCA 1609
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1605 ACAGTTTCGGAGTTTTAGTTCTTGAGATCATCAGTGGTAAGAAAAACAGTGGTTTCAGCA 1664
Query 1610 ATGAGGACAGCATGGAAGATCTCCTTAGCTTTGCTTGGAGAAATTGGAAGGAAGGCGTTG 1669
|||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1665 GTGAGGACAGCATGGGAGATCTCATCAGCTTCGCTTGGAGAAATTGGAAGGAAGGCGTTG 1724
Query 1670 CTTTGAATCTTGTGGACAAGATTTTGATGACCATGTCAAGTTATTCATCGAACATGATCT 1729
||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1725 CTTTGAATCTTGTGGACAAGATTTTGATGACAATGTCGAGTTATTCATCGAATATGATCA 1784
Query 1730 TGAGATGCATAAACATTGGTCTTCTTTGTGTCCAAGATAACGTTTCAGAGAGGCCAAGCA 1789
||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||
Sbjct 1785 TGAGATGCATAAACATTGGTCTTCTTTGTGTCCAAGAGAAAGTTGCAGAGAGACCAAGCA 1844
Query 1790 TGGCTTCGGTTCTTCTGATGTTAGATGGACATACTCTTGCTCTTTCAGAACCATCAAAAC 1849
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1845 TGGCTTCTGTTGTTCTGATGTTAGATGGACATACTATTGCTCTTTCAGAACCATCAAAAC 1904
Query 1850 CTGCATTTTTCTCACACAGCAATGCGGTATCAGATAGTTCTTCTTCTTTAGGACATAATG 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 CTGCATTTTTCTCACACAGCAATGCGGTATCAGATAGTTCTTCTTCTTTAGGACATAATG 1964
Query 1910 CAAAAACTTCAAATTATAATTCCAACACTGAGTTGTATCCTCGGTGA 1956
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1965 CAAAAACTTCAAACTATAATTCCAACACTGAGTTGTATCCTCGGTGA 2011
Score = 1190 bits (644), Expect = 0.0
Identities = 729/770 (95%), Gaps = 6/770 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTCTCTTCTTCTTCCTCTGATCTCACTCTTATTCCAAATCCAATGCTTTACCGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 14 ATGTTGTCTCTTCTTCTTCCTCTGATCTCACTCTTATTCCAAATCCAATGCTTCACCGTT 73
Query 61 AAGTCGCAACCGGTTCCGTTAAACCAAATATGCTCAAACGTCACAGGCAACTTCACCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AAGTCGCAACCGGTTCCGTTAAACCAAATATGCTCAAACGTCACAGGCAACTTCACCGTT 133
Query 121 AACACCCCTTACGCCGTCAACCTCGACCGTCTCATCTCCTCTTTATCATCTCTCCAAAGT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 134 AACACCCCTTACGCCGTCAACCTCGACCGCCTCATCTCCTCTTTATCATCTCTCCGACGT 193
Query 181 AACGATAACGGATTTTACAACATTTCAGTCGGAGACTCCGACGAAAAAGTCAACGCAATC 240
|||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 194 AACGTTAACGGATTTTACAACATCTCAGTGGGAGACTCCGATGAAAAAGTCAATTCAATC 253
Query 241 TCACAGTGTAGAGGCGATGTCAAACCTGAAGATTGCATCAATTGCATCGCAATGGCTGGA 300
||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 254 TCACAGTGTAGAGGCGATGTCAAACTTGAAGTTTGCATCAACTGCATCGCAATGGCTGGA 313
Query 301 AAAAGACTTGTCACGTTGTGTCCGGTTCAGAAAGAGGCGATTATTTGGTATGAAAAATGC 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 314 AAAAGACTTGTCACGCTGTGTCCGGTTCAGAAAGAGGCGATTATTTGGTATGACAAATGT 373
Query 361 ACGTTTCGGTACTCAAACCGAACGATCTTCAATAGATTGGAGATTTTCCTTCACACAAGC 420
|||||| | ||||||||||| || |||||||||||||||||||||| || |||||||||
Sbjct 374 ACGTTTAGATACTCAAACCGGACAATCTTCAATAGATTGGAGATTTCCCCTCACACAAGT 433
Query 421 ATAACCGGGA-CAAGAAACTTCACCGGAGATCGCGAT-GCTTGGGAGAAATCATTAAGGG 478
||||| |||| |||||||||||||||||||||| ||| | |||||||||||| |||||||
Sbjct 434 ATAAC-GGGAACAAGAAACTTCACCGGAGATCGTGATAG-TTGGGAGAAATCTTTAAGGG 491
Query 479 GTTTACTCGAAGGGCTTAAAAACAGAGCCTCTGTTATTGGTCGTAGCAAGAAGAATTTTG 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 492 GTTTACTCGAAGGGCTTAAAAACAGAGCCTCTGTTATTGGTCGGAGCAAGAAGAATTTTG 551
Query 539 TTGTCGGCGAAACGAGCGGGCCGTCATTTCAGACATTGTACGGTCTGGTTCAGTGCACAC 598
|||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 552 TTGTAGGCGAAACGAGCGGGCCTTCATTTCAGACATTGTTCGGTCTGGTTCAGTGCACAC 611
Query 599 CCGATATTTCGGAAGAGGATTGTTCCTATTGTTTGTCTCAGGGTATTGCAAAGATCCCAA 658
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 612 CGGATATTTCGGAAGAGGATTGTTCGTATTGTTTGTCTCAGGGTATTGCAAAGATCCCAA 671
Query 659 GCTGTTGTGATTTGAAAATGGGTAGTTATGTGTTGTCTCCTAGCTGTATTGT-GGCTTAT 717
||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 672 GCTGTTGTGATATGAAAATGGGTAGTTATGTGATGTCTCCTAGCTGTAT-GTTGGCTTAT 730
Query 718 GCTACCTGGAGATTCTATGATCCAGTGGACACTGATGAGCCAAGCTCAGT 767
||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 731 GCTCCCTGGAGATTCTATGATCCAGTGGACACTGATGATCCAAGCTCAGT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5