BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490650
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 752 0.0
AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein fa... 111 5e-24
> AT4G38840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18124978-18125559 REVERSE LENGTH=582
Length=582
Score = 752 bits (407), Expect = 0.0
Identities = 518/565 (92%), Gaps = 33/565 (6%)
Strand=Plus/Plus
Query 1 ATATATACTCATCACTGACTCCTTTAAGCTCTGCAAG-TTCTCAGATTTTCCAATAAAGC 59
||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1 ATATATACTCATCACTGACTCCTTTCTGCTCTGCAAGTTTCTCACATTTTCCAATAAAGC 60
Query 60 ATTTAACTTACAATTAAAGACAATCCATGGCGATCAGAATCCCTCGTGTGCTGCAATCAT 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTAACTTACAATTAAAGACAATCCATGGCGATCAGAATCCCTCGTGTGCTGCAATCAT 120
Query 120 CGAAGCAGATTCTCCGACAAGCGAAACTGTTGTCATCTTCTTC--CT-CTAGCTCTCTTG 176
|||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 121 CGAAGCAGATTCTCCGACAAGCCAAACTGTTGTCATCATCTTCTTCTTCTAGCTCTCTTG 180
Query 177 ATGTTCCAAAAGGCTACTTAGCGGTTTACGTAGGAGAACAAAAGATGAAGAGATTTGTAG 236
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 ATGTTCCCAAAGGCTACTTAGCGGTTTACGTAGGAGAACAAAATATGAAGAGATTTGTAG 240
Query 237 TTCCGGTTTCGTACTTAAACCAGCCTTCATTTCAAGATCTATTAAGAAAGGCAGAGGAAA 296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCGGTTTCGTACTTGGACCAGCCTTCATTTCAAGATCTATTAAGAAAGGCAGAGGAAG 300
Query 297 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTGCAGTGAAGAAATTTTTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTGCAGTGAAGAAATTTTTA 360
Query 357 TTGAGCTTGCTTCTCGCTTCAACTGATCATGACTCACTC--T----TT--T---GT-A-- 402
|||| |||||||||||||||||||||||||||||||||| | || | || |
Sbjct 361 TTGATCTTGCTTCTCGCTTCAACTGATCATGACTCACTCGATAACCTTACTTTTGTCATT 420
Query 403 ----------CAtttt-ttt-CCCAATTACTTTTCTTCAAGAGATGAGATGACTTAGAAA 450
|||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GATTTTTGTACATTTTGTTTTCCCAATTAGTTTTCTTCAAGAGATGAGATGACTTAGAAA 480
Query 451 CA---TCTCTCCTTGAAAGTGAAACAGAGACTTGTAACACTCTTTTTCCTCACTTACAGT 507
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGCATCTCTCCTTGAAAGTGAAACAGAGACTTGTAACACTCTTTTTCCTCACTTACAGT 540
Query 508 GAGTAGGACTCAAATCTAATCAAAA 532
|||| ||||||||||||||||||||
Sbjct 541 GAGTTGGACTCAAATCTAATCAAAA 565
> AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5968435-5968938 FORWARD LENGTH=504
Length=504
Score = 111 bits (60), Expect = 5e-24
Identities = 167/216 (77%), Gaps = 18/216 (8%)
Strand=Plus/Plus
Query 182 CCAAAA-GGCTACTTAGCGGTTTACGTAGGAGAACA-AAAGATGAAGAGAT-TTGTAGTT 238
|||||| || | ||| ||||| |||||||||| | | ||| |||||||| || | ||
Sbjct 159 CCAAAAGGGTTTCTT-GCGGTGTACGTAGGAG-AGAGCCAGAAGAAGAGATATT-TGGTG 215
Query 239 CCGGTTTCGTACTTAAACCAGCCTTCATTTCAAGATCTAT-TAAG-AAAGGCAGAGGAAA 296
||| | || ||||| | ||| ||||||||||||| ||| | | || ||| | ||||||
Sbjct 216 CCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCT-TCTCAGTAAA-TCCGAGGAAG 273
Query 297 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTG-CAGTGAAGAAATTTTT 355
||||||||||||||||||||||||||||| | || |||||||| | |||||| | ||
Sbjct 274 AGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCC-TGAAGATACCTTC 332
Query 356 ATTGA-GCTTG-CTTCTCG-CTTCAACTGATCATGA 388
|| | | | | ||||||| || ||| |||||||||
Sbjct 333 ATCAATG-T-GACTTCTCGGCTCCAA-TGATCATGA 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25468712529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5