BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490654
Length=2190
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38890.1 | Symbols: | FMN-linked oxidoreductases superfamil... 3480 0.0
> AT4G38890.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr4:18135800-18139206 REVERSE LENGTH=2291
Length=2291
Score = 3480 bits (1884), Expect = 0.0
Identities = 2093/2194 (95%), Gaps = 13/2194 (1%)
Strand=Plus/Plus
Query 1 ATGTCCGATGTAATAGCGGAGCTCGCGGCAGATACTAGTGTTGAAGGAGATGCAAAGCCT 60
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 107 ATGTCAGATGTAATAGCGGAGCACGCGGTGGATACTAGTGTTGAAGGAGATGCAAAGGCT 166
Query 61 GC-TTCACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGCAAGAGCT 119
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 167 GCGTT-ACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGGAAGAGCT 225
Query 120 TATAGAACGATCAATGGCTCCTATCAAGAAGGAGTTCCTATGTCCTCCTCCTCCAAGCCG 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 226 TATAGAACGATCAATGGCTCCTATTAAGAAGGAGTTCCTTTGTCCTCCTCCTCCAAGCCG 285
Query 180 TTCCGGGAAGCAAAATGACGCCGCCGATGTTAGGGCGCCTCAATCGGGCTTGGTTCAGGA 239
||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 286 TTCCGTGAAGCAAAATGATGCCGCCGATGTTAGGGCGCCTCAATCGGGTTTGGTTCAGGA 345
Query 240 GAAGAAATCTAAACGACAACTCAAACGGGAACGCCGCGAGCAATCTACCATCAATCTCTG 299
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 346 GAAGAAATCTAAACGACAACTGAAACGGGAACGCCGCGAGCAATCTACGATCAATCTCTG 405
Query 300 TCCGCAGGTGGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCCGCAGGTTGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 465
Query 360 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAACCAGATGATATAGAGGGGCAATGCCC 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 466 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAGGCAGATGATATAGAGGGGCAATGCCC 525
Query 420 ATTTGTGGCCTCTGAAATGAAGTGTGCATATGGTTTATCATGTAGATTCCTAGGCACTCA 479
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 526 ATTTGTGGCCTCTGGAATGAAGTGTGCATATGGTTTATCATGTAGATTCTTAGGCAGTCA 585
Query 480 CAGAGATATTGCTGGTAATTCTGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 539
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 CAGAGATATTACTGGTAATTCAGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 645
Query 540 AGAGACCCAGAGGCTTCTCTGGAAAAATAAGATGACTTTTACCAACGCAGATGCAAAACT 599
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 646 AGAGACACAGAGGCTTCTGTGGAAAAATAAGATGACTTTTACAAACGCAGATGCGAAACT 705
Query 600 CAAGTCCCTCGGTCTGTTGGGGCATGCCaaaaaaaGCAACGCTGCCGAAGAAAATAGCAC 659
|||||||||||||||||||| ||||||||||||||||| |||||||| |||| || | |
Sbjct 706 TAAGTCCCTCGGTCTGTTGGGACATGCCAAAAAAAGCAATGCTGCCGAGGAAATTACCGC 765
Query 660 AGAAAAAACTCAAAATGGTGTGAACGGCACTCAAGCAACTGATGCAGCGGTTGACTCAGC 719
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 766 AGAAAAAACTCAAAATGGTATGAACGGCACTCAAGCAACTGAAGTAGCGGTTGACTCAGC 825
Query 720 TGTCAGTTCTGAGCCTACATCCGAAATGATACAAGATGCTGATATTCCTGGACCATTAAA 779
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 826 TGTCAGTTCTGAGCATACATCAGAAATGATACAAGATGTTGATATTCCTGGACCATTAGA 885
Query 780 AACTGAGGAAGTTCGTCCCATGAAAAAGGCTAAATCTGAGGA-CAAAGAGAATTCTAAAC 838
|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 886 AACTGAGGAAGTTCGTCCCATGAAAAAGGCAAAATCTGAGGACCAAA-AGAATTCTAAAA 944
Query 839 CTGGAGATGTTGGTGGAGTTAATGATGGCGTGAAAGTGGAAGAGGATGCGAAAAAGAATG 898
|||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 945 CTGGAGATGTTGGTGGAGTTTATGATGGCGTGAAATTGGAAGAGGAAACGAAAAAGAATG 1004
Query 899 GGTATTCTATTTCAAAAGCTGACGTAGAAGATGAGGATAGTATCAAAATTGTTGAAACTG 958
||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1005 GGTATCCTACTTCAAAAGCTAACGTAGAAGATGAGGATAGCATCAAAATTGTTGAAACTG 1064
Query 959 ATAGTAGTTTAAAGTTGCACCCTCGTGAAAAGAAAAAGTTAATTGATTTTAGGGATAAGT 1018
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1065 ATAGTAGTCTAAAGTTGCACCCTCGAGAAAAGAAAAAGCTAATTGATTTTAGGGATAAGT 1124
Query 1019 TGTACCTTGCACCCCTAACAACTGTGGGCAATCTACCCTTCCGAAGACTTTGTAAAGTGT 1078
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1125 TGTACCTTGCACCCTTAACAACCGTGGGCAATCTTCCCTTCCGAAGACTTTGTAAAGTGT 1184
Query 1079 TGGGAGCAGATGTGACTTGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGCCAAG 1138
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1185 TGGGAGCAGATGTGACTTGTGGTGAGATGGCTATGTGCACAAATCTTTTGCAGGGCCAAG 1244
Query 1139 CTTCAGAATGGGCTCTGCTTAGACGGCATTCTTCGGAAGATCTGTTTGGTGTTCAGATTT 1198
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1245 CTTCTGAATGGGCTCTGCTTAGACGACATTCATCGGAAGATCTGTTTGGTGTTCAGATTT 1304
Query 1199 GCGGTTCTTATCCTGACACGGTGTCGCGCACAGTTGAACTTATAGACCGAGAGTGCACCG 1258
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1305 GCGGTTCTTATCCTGACACGGTGTCGCGCGTAGTTGAACTTATAGACCGAGAATGCACTG 1364
Query 1259 TTGATTTCATAGACATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1318
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTGATTTCATAGATATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1424
Query 1319 GTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1378
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1425 GTTCAGCTCTTCTCAACAAACCATTACGGATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1484
Query 1379 TTGTTGAAACACCTATTACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1438
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TTGTTGAAACACCTATCACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1544
Query 1439 TAGATTCATTAATTGCAGATATCGGAAATTGGGGAGCCACTGCAGTGACTATTCATGGGC 1498
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1545 TAGATTCTTTAATTGCAGATATCGGAAACTGGGGAGCCACTGCAGTGACTATTCATGGGC 1604
Query 1499 GATCAAGACAGCAACGTTATAGCAAGTCTGCGGATTGGGACTATATATACCAGTGTACCA 1558
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1605 GGTCAAGACAGCAACGTTATAGCAAGTCTGCAGATTGGGACTATATATACCAGTGTACCA 1664
Query 1559 AAAACGCTTCTACTAACCTACAAGTTATAGGAAATGGAGATGTTTACTCTTATTTAGACT 1618
|||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1665 AAAACGCTACTACTAACCTACAGGTTATAGGAAATGGAGATGTGTACTCATATTTAGACT 1724
Query 1619 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1784
Query 1679 TGATCAAGCCTTGGGTATTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCCG 1738
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1785 TGATCAAGCCTTGGATCTTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCTG 1844
Query 1739 GAGAAAGACTCAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1798
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 GAGAAAGACTTAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1904
Query 1799 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACGTTTA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1905 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACATTTA 1964
Query 1859 GGTACATACCTGTTGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCACCTT 1918
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1965 GGTACATACCTGTCGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTT 2024
Query 1919 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 2084
Query 1979 TGCGTATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACGTTTGCCCCCAAGC 2038
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2085 TGCGGATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACATTTGCCCCCAAGC 2144
Query 2039 ACAAATCCAACGCATATGACCGAGCTGAAAACGGCTGATTCAACCACATCTTCTGTAATA 2098
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 2145 ACAAATCCAACGCATATGACAGAGCTGAAAACGGCTGATTCAACCACATTTTCTGTAATA 2204
Query 2099 TCAATTCTCATTC-AAAACATGTCTGAAACATCATTCTGTAATAtttttttatttttGAC 2157
|||| ||||||| |||||||||||||||| ||||||||||||||||||| |||
Sbjct 2205 TCAAATCTCATTTTAAAACATGTCTGAAACGTCATTCTGTAATATTTTTT-------GAC 2257
Query 2158 TGATTAAATAAA-GACAATGCGATGATTTCTTTG 2190
|||||||||||| |||||||||||||||||||||
Sbjct 2258 TGATTAAATAAAAGACAATGCGATGATTTCTTTG 2291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108633979380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5