BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490659
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 fam... 1531 0.0
AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | ... 750 0.0
> AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr4:18149534-18151776 FORWARD LENGTH=1197
Length=1197
Score = 1531 bits (829), Expect = 0.0
Identities = 965/1030 (94%), Gaps = 11/1030 (1%)
Strand=Plus/Plus
Query 1 GGAATCACGCGACCAATTGATTCTTCTTCTCACAAACAGTTGGCGTTAAACTC-AATTTA 59
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 16 GGAATCACGCGACCAATTGATTCTTCTTCTCACAAGCAGTTGGCGTT-AACTCTTGTTTA 74
Query 60 TCTACCAGTTGAAAATATGTTTTACGATGGATACGCGTATCATAGAACTACCTTTGAGCA 119
||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 75 TCTACCAGTTG-AAAGATGTTTTACGATGGATACGCTTATCATGGAACTACCTTTGAGCA 133
Query 120 GACTTACCGGTGTTATCCCTCAAGCTTTATTGATAAGCCTCAGATTGAAAGTGGTGGCAA 179
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 134 GACTTACCGGTGTTATCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAA 193
Query 180 GATTATAATGCCACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATCGATTATCCGAT 239
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 194 GATTATAATGCCACCATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAAT 253
Query 240 GCTGTTTGAGCTTCGTAATGCTTCAACGGATAGTGTTTCTCACTGCGGAGTCCTTGAGTT 299
||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 254 GCTCTTTGAACTTCGTAATGCTTCAACAGATAGTTTTTCTCACTGCGGAGTCCTTGAGTT 313
Query 300 CATCGCAGAAGAAGGCGTGATTTACATGCCCTACTGGATGATGCAGAACTTGCTGTTGCA 359
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 314 CATCGCAGAAGAAGGCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCA 373
Query 360 AGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTATGTGAAACT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 374 AGAAGGAGACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACT 433
Query 420 ACAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTAGAGACCGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 434 GCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGC 493
Query 480 ATTGAGGAACTATTCATGTCTAACTGTCGGAGATAGCATTATGGTCCCATACAACAATAA 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 494 ATTGAGGAACTATTCATGTCTAACGGTCGGAGATAGCATTATGGTCCCATACAACAATAA 553
Query 540 GAAATACTTCATAGATATACTGGAGGCAAAGCCTTCTAATGGTATCAGCATCATTGAAAC 599
||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 554 GAAATACTTCATAGACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAAC 613
Query 600 TGATTGTGAGGTTGATTTCGCTCCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGT 659
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 614 TGATTGCGAGGTTGATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGC 673
Query 660 ACCTGCTTCAGCTAAAGGTCAAGCAAAAGCTAATGAGGTTGCTGTGGCTGAAGCAGAACC 719
||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 674 ACCTGCTCCAGCCAAAGGTGAAGCAAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACC 733
Query 720 AAAGTTTAACCCTTTCACGGGTTCGGGAAGACGTTTGGATGGACGACCTTTATCCTATGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AAAGTTTAACCCTTTCACGGGTTCGGGAAGACGTTTGGATGGACGACCTTTATCCTATGA 793
Query 780 ACCGCAACCTGTTGCTGCTAACAGTAACGGCCAGTCACA-C-TCT--CTAGCA--AGTAG 833
||||||||||| ||||||||||||||||||||| ||||| | | | | || | |||||
Sbjct 794 ACCGCAACCTGGTGCTGCTAACAGTAACGGCCAATCACATCCTGTTGCAAGTAGTAGTAG 853
Query 834 TAGTGGGTCAGAGAAGGCTAAACAACAAACTCAAGGGAAACTTGTGTTTGGTTCTCATGT 893
|||||||||||||||||||| ||||||| || ||||||||||||||| ||||| ||||
Sbjct 854 TAGTGGGTCAGAGAAGGCTACGCAACAAAATCGAGGGAAACTTGTGTTCGGTTCAAATGT 913
Query 894 AAACCGGGCTACTAAAGAGACAACAAAGGTTGGAGCTGGGAAAGATAGAAAGCAAGAGGA 953
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AGAGCGGTCTACTAAAGAGACAACAAAGGTTGGAGCTGGGAAAGATAGAAAGCAAGAGGA 973
Query 954 AGAGGCTGAGAAGAAAGACAAGTTC-AACGCTTTTAGTGGTAAAAAATATTCATTGAGGG 1012
||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 974 AGAGGCTGAGAAGGAAGCCAAGTTCCAA-GCTTTTAGTGGTAAAAAATATTCATTGAGGG 1032
Query 1013 GCTGAACCAA 1022
| ||||||||
Sbjct 1033 GTTGAACCAA 1042
> AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1
| chr2:9107566-9110261 FORWARD LENGTH=1547
Length=1547
Score = 750 bits (406), Expect = 0.0
Identities = 614/713 (86%), Gaps = 19/713 (3%)
Strand=Plus/Plus
Query 75 TATGTTTTACGATGGATACGC-GTATCATAGAACTACCTTTGAGCAGACTTACCGGTGTT 133
|||||||| |||||||||| | |||||| |||| ||||||||||||| |||||||||||
Sbjct 338 TATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTT 396
Query 134 ATCCCTCAAGC-TTTATTGATAAGCCTCAGA-TTGAAAGTGGTGGCAAGATTATAATGCC 191
|||| | | | ||||| || ||||| || | |||||||||||| |||||||||||||||
Sbjct 397 ATCCGGC-ATCTTTTATCGACAAGCCACA-ACTTGAAAGTGGTGACAAGATTATAATGCC 454
Query 192 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATCGATTATCCGATGCTGTTTGAGCT 251
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 455 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCT 514
Query 252 TCGTAATGCTTCAACGGATA-GTGTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAG 310
|||||||||| || || | ||||| | ||||| ||||||||||||||||| |||||||
Sbjct 515 TCGTAATGCTGGAATTGA-ACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAG 573
Query 311 AAGGCGTGATTTACATGCCCTACTGGATGATGCAGAA-CTTGCTGTTGCAAGAAGGAGAC 369
||||| ||||||||||||| || |||||||||||||| || |||| ||||||||||||||
Sbjct 574 AAGGCATGATTTACATGCCATATTGGATGATGCAGAATCT-GCTGCTGCAAGAAGGAGAC 632
Query 370 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTATGTGAAACTACAACCCCAC 429
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 633 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCAC 692
Query 430 ACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTAGAGACCGCATTGAGGAAC 489
||||||||||| || |||||| | ||||||||||||||||| ||||| || ||||| ||
Sbjct 693 ACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAAT 752
Query 490 TATTCATGTCTAACT-GTCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTT 548
|||||||| |||||| || || |||||||||||||| ||||||||||||||||| |||||
Sbjct 753 TATTCATGCCTAACTAGTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTT 811
Query 549 CATAGATATACTGGAGGCAAAGCCTTCTAATGGTATCAGCATCATTGAAACTGATTGTGA 608
|||||||||| | || |||||||| |||| | ||||||||||| ||||| || |||||
Sbjct 812 CATAGATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGA 871
Query 609 GGTTGATTTCGCTCCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGTACCTGCTTC 668
|||||||||||| |||||||| ||||||||||| || ||||| || || |||| || |
Sbjct 872 GGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGC 931
Query 669 AGCTAAAGGTCAAGCAAAAGCTAATGAGGTTGCTGTGGCTGAAGCAGAACCAAAGTTTAA 728
|||||| |||| ||||||||| | ||||||| || | |||| | ||||||||||| ||
Sbjct 932 AGCTAAGGGTCCGGCAAAAGCTGAGGAGGTTG-TG-GA-TGAACCTGAACCAAAGTTCAA 988
Query 729 CCCTTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCT-TTATCCTATGA 779
||||||||| || || |||||||| || ||||| | ||||| || |||||||
Sbjct 989 CCCTTTCACCGGATCTGGAAGACGGTTAGATGGGA-GACCTCTTG-CCTATGA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5