BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490661
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38940.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1855 0.0
> AT4G38940.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18152687-18154114 FORWARD LENGTH=1428
Length=1428
Score = 1855 bits (1004), Expect = 0.0
Identities = 1241/1350 (92%), Gaps = 37/1350 (3%)
Strand=Plus/Plus
Query 30 TTCATTTCCTTCAAAACGGCTACAGAATTA-GGTTTTGTTTCTTCTCTCTCGTCGATTG- 87
||||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct 95 TTCATTTCCTTGAAAACGGTTACAGAATTAGGGTTTTGTTTCTTCTCTCTCGCCGATTGA 154
Query 88 -CGTGGAAATGTCTT-CCCAA--ATTATTAGGGCACAGAAGAAGCAACCGCCGGAGCCGC 143
| | |||||||||| ||||| || |||||||||| |||||||||||||||||||||||
Sbjct 155 TC-TTGAAATGTCTTCCCCAATTATAATTAGGGCACCGAAGAAGCAACCGCCGGAGCCGC 213
Query 144 CGTGTCTGATTTCGTTACTCCCTGATGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 203
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 214 CATGTCTGATTTCGTTACTCCCCGAAGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 273
Query 204 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCGTCTC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 274 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCTTCTC 333
Query 264 CGGAGCTTTACGCCAGACGATCCTTCTTCGGATGCACAGAGCAATGTCTCTACGTCGCAA 323
||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 334 CGGAGATTTACAAGAGACGATCCTTCTTCGGATGCACAGAACAATGTCTCTACATCGCAA 393
Query 324 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTTTGCCGGAAACCTAACGGCC 383
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 394 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTGTGCCGGAAACCTAACGGAC 453
Query 384 AACAATTCTCCGGCACC---GCCTCTGATCATCGCTTGGTCCATATCCCCTCTCTCCCTC 440
||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||
Sbjct 454 AACAATTCTCCGGCACCACCGCCTCTGATCATCGCCTGGTACATATCCCCACTCTCCCTC 513
Query 441 CTATGCCTATACAAGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 500
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTATGCCTATGCATGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 573
Query 501 TTTGCAATTGGAAGATCACACCGAGTGTTTCGCTCATCGATTGTCTAACTCACACGGCTC 560
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 574 TTTGCAATTGGAAGATCACATCGAGTGTTTCGCTCATCGATTGTCGAACTCACACTGCTC 633
Query 561 AGACTCTCCCTGACATGCCTAAGGCCGTTGCTATTTCG-GTCACAGAGCTCATTGATCGG 619
||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 634 AGACTCTCCCTAACATGCCCAAGGCCGTTGCT-TTTCCCGTCACAGAGCTCATTGATCGG 692
Query 620 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGTTGAAATCGCCGTCAAGAAGT 679
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 693 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGATGAAATCTCCGTCAAGAATT 752
Query 680 ATGATGGTGTATGATACTGATACCGAAATGTGGGAACTTCGGACGAGGCCAGATTGGGAG 739
||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 753 ATGATGGTGTATGATACAGATACCGAAATGTGGCAACTTCGGGCGAGGCCAGATTGGGAG 812
Query 740 GCAGGGAAGAGATGGTTTAGCAGTGTGGTAATAGGAGGTAAGATTTACATGAGGACTTAT 799
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 813 GCAGGGAAAAAATGGTTTAGCAGTGTGGTTATAGGAGGTAAGATTTACATGAGGACTTAT 872
Query 800 TACAATAGCTTTGTTTACGATCCGATTGA-AGATAGCTGCGTTAGAGACGAGGTTCTGCA 858
||||||||||||||| |||||||| ||| | | || |||| |||||| |||||| ||||
Sbjct 873 CACAATAGCTTTGTTTGCGATCCGAATGATACA-AGTTGCGATAGAGATGAGGTTTTGCA 931
Query 859 TTCTAAGGAGTGGTGGAGTTCGTGTGTGATAGATGATGTGTTGTATTACTATGATGTTCG 918
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 932 TTCTAAGGAGTGGTGGAGTGCGTGTGTGATAGATGATGTCTTGTATTACTATGATGTTCG 991
Query 919 TGGGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGATCTTGGGGAGTGGTTAAAGGTTT 978
|| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 992 TGAGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGAGCTTGGGGAGTCGTTAAAGGTTT 1051
Query 979 TGAAGGGTTGTTGCCTGAGGCTTGTAAGTGGTCGAAAACTGTGAGTTGCACCGGTGGGAA 1038
|||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1052 TGAAGGATTGTTGCCTGTGGCTTGTAAGTGGTCCAAAACTGTGAGTTACACCGGTGGGAA 1111
Query 1039 TTTGGTTCTGTTCTTGCAGAAAACAGAGGAAACGGAGATTTGGTGTGCGGAAATCGCAGT 1098
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1112 ATTGGTTCTGTTCTTGCAGAAAACAGAGAAAACAGAGATTTGGTGTGCGGAAATCGCAGT 1171
Query 1099 GGAAAGACGTGAAGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAGTGTTGTGCTTGG 1158
||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1172 GGAAAGACGCGAGGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAATGTTGTGCTTAG 1231
Query 1159 TGGGAATTTTCACATTATGGATTGTGTAGCTGTTGAGCTCTGATCTTGTGATGAAATAGA 1218
||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1232 TGGGAATTTTCACATAATGGATTGTGTAGCTGTTGTGCTCTGATCTTGTGTTGTAATAGA 1291
Query 1219 CTTTTGTTGTCCCCTG-TT---CTTGTGTGTTTACTAGCTAGCTTATGAATGTGCTTTAA 1274
||| || |||||||| || ||||||||||| || ||||||||||||||| |
Sbjct 1292 CTT--GT-GTCCCCTGCTTGTTCTTGTGTGTTT--TA-CTAGCTTATGAATGT--T---- 1339
Query 1275 AACTTCCCTGTATTCTTCTGTTTATTAGCGTAAGTTTGTATGGTGTGA-TGTTGTT-T-T 1331
|||||||| | |||||| |||||||||||| ||||||||||| | | ||||||| | |
Sbjct 1340 --CTTCCCTGGAATCTTCTTTTTATTAGCGTATGTTTGTATGGTAT-ACTGTTGTTGTGT 1396
Query 1332 T-GGTGGGGGCAATCTTACTTACATTTGTT 1360
| |||||||| |||||||||||||||||||
Sbjct 1397 TTGGTGGGGGAAATCTTACTTACATTTGTT 1426
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 31
|||||||||||||||||||||||||||||||
Sbjct 19 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5