BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490668
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38980.1 | Symbols: | unknown protein; Has 44 Blast hits to... 1458 0.0
> AT4G38980.1 | Symbols: | unknown protein; Has 44 Blast hits
to 44 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa
- 2; Fungi - 8; Plants - 24; Viruses - 0; Other Eukaryotes
- 8 (source: NCBI BLink). | chr4:18166709-18168192 REVERSE
LENGTH=1114
Length=1114
Score = 1458 bits (789), Expect = 0.0
Identities = 1030/1138 (91%), Gaps = 49/1138 (4%)
Strand=Plus/Plus
Query 1 TCTCGGAGATTTCAAAATTAGTTTTCTTCTTCTTTTGTTCTTCCGAAAATTAGGGTTATT 60
|||| |||||||||||||||| ||| |||||| |||||| ||||||||||||| ||
Sbjct 4 TCTCAGAGATTTCAAAATTAG-TTT-TTCTTC-----TTCTTCTGAAAATTAGGGTT-TT 55
Query 61 TTTGGGGATTTTCGTGTCGCTAAAG--ATGACTGAACGAGAAGACGTAGCAGAGGTTTCT 118
|| ||||||| |||||| | ||||| ||| ||||||||||||||| |||||||||||||
Sbjct 56 TTGGGGGATTCTCGTGTGGATAAAGCCATGGCTGAACGAGAAGACGCAGCAGAGGTTTCT 115
Query 119 CTTTTAGTGAGAAACGAGGAAGATCTTTCTCCTGAATGTTTAGCTTGGGCTGATTCCTGT 178
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 116 CTTTCAGTGAGAAACGAGGAAGATCTTTCTCCTGAATGTGTAGCTTGGGCTGATTCTTGC 175
Query 179 ATCATCAGTTTTCCAGATGATTCAGACAACAATAACTGGGGAACTTTCAGAGATGCTTTA 238
||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 176 ATCATCAGTTTTCTAGATGATTCAGACAACAATAATTGGGGAACTTTTAGAGATGCTTTA 235
Query 239 ACAGAAATCATCGATATCCATCCCGAGATGTTTGTTCCTTCATCTAC-A--GGAACAAGA 295
|||||||||||||||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 236 ACAGAAATCATCGATATCCATCCCGAGATGTTTGTTTTTTCATCAACAACGGGAACAAGA 295
Query 296 GGTGTCCTGTCTCCAGACGAGGATATGACTGAATCCGAGCCTATTCATCTACGGAGATTT 355
|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 296 GGTGTCCTGTCTCCAGACGAGGTTATGACTGAATCCGAGACTATTGATCTACGGAGATCT 355
Query 356 GAACCAGAAGCTGATTCAGCGAACTGTAAAACTAATTCATCGAATGAAGAAGTCAGCGAG 415
||||||| ||||| |||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 356 GAACCAGCAGCTGGTTCAGCGAACAGTAGAACTAATTCATCGAATGAAGAAGTTAGCGAG 415
Query 416 ATTATCTCTATGCTAACGTTTGAATCAGACCCGTCAAAGAATT-CTTTAGAAGATTATTA 474
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 416 ATTATCTCTATGCTAACTTTTGAATCAGACCCGTCAAAGAATTGC-TTAGAAGATTATTA 474
Query 475 TTTTTCAGGGTCCATAGCAGAGAATGG-AACCTGTGAACCAGCGG-CGGATCGTCCTACT 532
|||| ||| ||| |||||||||||||| |||| |||||||||||| ||| | | |||
Sbjct 475 TTTTCCAGAGTCTATAGCAGAGAATGGAAACC-GTGAACCAGCGGACGG-T--T-CTAAG 529
Query 533 ACAGATCTTGGAGGTGTTGAAAGTATAGAAGAAGATGGGTCAGTGAGCAATGCAGAGGCT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 530 ACAGATCTTGGAGGTGTTGAAAGTATAGAAGAAGATGGGTCAGTGAGCAATGGAGAGGCT 589
Query 593 GAAGAAGAAGAAGAACCAGCGTCATTATCGTCTCAAGTATTCAAGGATGATTTCATGAGC 652
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 590 --A-AAGAAGAAAAACCAGCGTCAGTATCGTCTCAAGTATTCAAGGATGATTTCATGAGC 646
Query 653 ACATACGTTGAAGACAATGTTGACGATTGTAATGTTACAGAGGTTCCTGTCAAAGTAACT 712
||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 647 ACATACGTTGAAGACAATGCTGAGGATTGTAATGTTACAGAGGATCCTGTCAAAGTAACT 706
Query 713 CCACAAGAGATTTTCAAGGTGTGGGATCT-GCAGATTGTGGGGGATGATGACGAGGAAGA 771
|||||||||||||||| ||||||||||| | || |||||||||| |||| ||||||||
Sbjct 707 TCACAAGAGATTTTCAAAGTGTGGGATCTAG-AGGTTGTGGGGGACAATGATGAGGAAGA 765
Query 772 TGGGTTGGTGCTGCAGCTGAAGAAGGCCCTCGATGAGTCTTCCAC-G----G----T-CC 821
||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 766 TGGGTTGGTGCTGCAGCTGAAGAAGGCCCTCGATGAGTCTTCCACTGTCCAGCCCCTTCC 825
Query 822 A--GCCACTGAATGATGATCACGTTGTAGCAGAGAAGAGCAATATCGATGATCTGATAGC 879
| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 826 ACAGCCACTGAATGATGATCAAGTTGTATCAGAGAAGAGCAATATCGATGATCTGATATC 885
Query 880 TGGGATATCGGATCTGTCTCTTGCAGAAACTTTTAAGTGAACGATGAAGTTTAAGTATGT 939
||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 886 TGGAATATCGGATCTGTCTCTTGCAGAAACTTTTAAGTGAACTATG---T----GTATGT 938
Query 940 GTTT-ATTTTGACATCAGAAACTCTCTCTTTACTTTACTACTCCTTAACCGACACAAACC 998
|||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 939 GTTTTATTTTGACATCACAAACTCTCT-TTTGCTTTACTACTCCTTAACCGACACAAACC 997
Query 999 GGTTTTGAGATTTCAAAATCTGCTACTAGACCAGACCAAAAGGTTTAAAGGGTCAATTTG 1058
|| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 998 GGGTTTGAGATTTCAAAATCTGCTACTAGACCAGACCGAAAGGTTTACTGGGTCAATTTG 1057
Query 1059 GTGGCTACACGACCCACTTGGCCACCTGTTGTGCAATGGTGACGATGAGATTGCAGTG 1116
||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1058 GTGCCTACAC-ATCCACTTGGCCACCTGTTGTGCAATGATGACGATGAGATTGCAGTG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5